trnav-uac_20


Basic Information

Item Value
gene id trnav-uac_20
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053127.1
NCBI id CM020924.1
chromosome length 37730433
location 3540951 ~ 3541023 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>unassigned_transcript_913
GGTTCCATAGTGTAGCGGTTATCACGTCTGCTTTACACGCAGAAGGTCCTGGGTTCGAGCCCCAGTGGAACCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
unassigned_transcript_913 True 73 tRNA 0.55 1 3540951 3541023

Neighbor

gene id symbol gene type direction distance location
trnaa-agc_20 NA coding downstream 97033 3443846 ~ 3443918 (-)
trnav-aac_4 NA coding downstream 108373 3432506 ~ 3432578 (-)
trnai-aau_27 NA coding downstream 116266 3424613 ~ 3424685 (-)
trnav-cac_1 NA coding downstream 124513 3416366 ~ 3416438 (-)
trnav-cac NA coding downstream 131073 3409806 ~ 3409878 (-)
LOC120543677 NA coding upstream 49288 3590311 ~ 3592122 (-)
LOC120543676 NA coding upstream 56688 3597711 ~ 3599732 (-)
LOC120543685 LOC106675582 coding upstream 62421 3603444 ~ 3604114 (-)
LOC120543675 LOC100703014,LOC103354664,LOC102796844,LOC102305065,LOC101476254 coding upstream 84707 3625730 ~ 3639477 (-)
LOC120543681 NA coding upstream 122806 3663829 ~ 3664776 (-)
LOC120543686 NA non-coding downstream 2116 3525192 ~ 3538835 (-)
trnas-uga_24 NA non-coding downstream 2485 3538385 ~ 3538466 (-)
G162938 NA non-coding downstream 6310 3101452 ~ 3534641 (-)
G163017 NA non-coding downstream 14673 3525526 ~ 3526278 (-)
trnav-cac_6 NA non-coding downstream 69625 3471254 ~ 3471326 (-)
G163029 NA non-coding upstream 27117 3568140 ~ 3568653 (-)
G163032 NA non-coding upstream 30982 3572005 ~ 3572253 (-)
G163055 NA non-coding upstream 118939 3659962 ~ 3660294 (-)
G163057 NA non-coding upstream 151926 3692949 ~ 3693160 (-)
G163072 NA non-coding upstream 243739 3784762 ~ 3786728 (-)
LOC120544249 alg8 other downstream 307669 3178767 ~ 3233282 (-)
LOC120544311 LOC101470105,LOC107380983,LOC102214284 other downstream 342703 3185970 ~ 3198248 (-)
LOC120543772 NA other downstream 445477 3037923 ~ 3095474 (-)
G162910 NA other downstream 711357 2827089 ~ 2829594 (-)
LOC120543939 NA other downstream 889548 2342150 ~ 2651403 (-)
G163259 NA other upstream 329302 3870325 ~ 3874115 (-)
rnasekb rnasek,LOC107554319,LOC101475670 other upstream 606840 4147863 ~ 4157624 (-)
LOC120544555 siah2,LOC101471392,LOC102786130 other upstream 740750 4281773 ~ 4821872 (-)
G163334 NA other upstream 761543 4302566 ~ 4304048 (-)
G163315 NA other upstream 793820 4334843 ~ 4820499 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
rainbow trout (Oncorhynchus mykiss) trnav-uac NA coding NC_048567.1 CM023221.2 12130171 ~ 12130246 (-)
rainbow trout (Oncorhynchus mykiss) trnav-uac-21 NA coding NC_048579.1 CM023233.2 42884062 ~ 42884134 (-)
striped catfish (Pangasianodon hypophthalmus) trnav-uac NA coding NC_047601.1 CM018547.1 14468553 ~ 14468625 (-)
striped catfish (Pangasianodon hypophthalmus) trnav-uac_8 NA coding NC_047609.1 CM018555.1 6967201 ~ 6967273 (-)
tiger barb (Puntius tetrazona) trnav-uac_7 NA coding NC_056719.1 CM032088.1 11096480 ~ 11096552 (-)
mexican tetra (Astyanax mexicanus) trnav-uac NA coding NC_035910.1 CM008313.1 6174678 ~ 6174750 (+)
mexican tetra (Astyanax mexicanus) trnav-uac_8 NA misc NW_019171985.1 APWO02001583.1 101544 ~ 101616 (+)