LOC120545145 (vcan)


Basic Information

Item Value
gene id LOC120545145
gene name vcan
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 31662472 ~ 31713774 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779210.1
ttcttCCACTCTTCCTCtcgtaatctctctctctctccctctcaggcTTTCCCTATTCTCACTTCCTCCATCTACACCTCCcatttctctctttgtgtcaccgccccccaccccccctctctctctctccggcaCTGGGCGTCGTATTATCAGGGGAGGTATACGGCCATGTGTGCCCCTCCCTCCTTGTCTGGATAATAGCGGGTGTGAAGTGGATTTGAACTTGCAGCCGCTGCTGAGAGGTGGAAGAGGTCCGAGCTGCACACATCTGTTAGAGAGGAGCTGCTGGAACAAGCCTGTCGCACTCGGTTGGCTTTGGGAAATTTCTTTTGGAAGAGTTTGAAGTGATAAAACTAACCACAGCAACTGGATCTTTGGggtctgttttttcttcttagGATTAAAGATTGTGTTGAGATGATTCCACACGTCCTCACACACCTGCTCTGCTTCGTGTGTCTGAGCGCTGCTCGTCCTCAACCAGgATCCTGTTTTCCAGCGCCGCCACCCTCGATGACCATGCAGAAGAACCCGCCTGCTTCGACCGGCTCTCTGGCCGGCCGGGTGGTGCTGCCGTGCCACTTCTCCATCGCGCTGCCGCTTCCCCCCAGCAGTTCGCCACACGCTCCGTCATACCCCGCACGACCCCCAGCTCCTCACACCACCCCGAGTCCCGCAGAGGAGCTGAGGATCAAGTGGTCGAAGCTGGAGGAAGCGGAGGAGAAGGTGGTACTGGTGGCGCAGGGGGGCGTGGTAAAGGTGGGGCAGGACTACATGCACAGGGTGACGGTGCCCGGCCAGCCGCTGTTGCTAGGCGACGCCTCCCTGGTGATGGAGCGGCTCCGGGCGAGCGACGCGGGGCTTTACCGCTGTGAGGTGATGCACGGGATGGAGGACACCCAGGACACCGTCACACTCAACGTCACCGGTGTGGTGTTTCACTACAGAGCCAACAGCAGCCGCTACACTCTGGATTTTCCTGTCGCTGTGGAGGCGTGCAGAAACGCAGGAGCATCCATCGCTACGCCCGAACAACTCACTGCTGCTTTTGAGGACGGCTTGGACCGCTGTGATGCAGGCTGGCTCGCCGACCAGTCAGTAAGATACCCAATCACATTGCCCCGTCCCGGCTGTGAAGGTAATCTGATGAGCAGACCCGGGGTGAGAACGTACGGCGTCCGCGACCCTGCGGAGAAATACGACGTGTACTGCTACGTCGATAAAATACAAGGCGACGTCTTCTACCCCCCCTCCGTCAGAGATAAGCTCACCCTGCAGCAGGCCCGAGACGAGTGCGTGAAGCACGACGCCGTGTTGGCGTCTCCCGGTCACCTGTACGCAGCCTGGAGGTCCGGGCTGAACCGCTGCGACTACGGCTGGCTGTCGGACGGCAGCGTGCGCTACCCGGTCACCGTCCCCAGGCCTCAGTGCGGAGGAAACCAGCTCGGGGTTCGCACGCTCTACAAGTATGAAAACCAAACCGGCTACCCAAACCCCAACGACAGGCACGGACTTTTCTGCTTCAAGGCTAAACTTCCAGAGCCAACTACCACAAGTCCACCGACGACCCGGGTTGAAATTCAAACGAGAACCCCAGATCCTGTCCCATATTCACCAACAGAGGGCCCGCACTTAGACCCCCACACTTCCCCTTACACCACAGCCTCCGGGacccccacctccacccccACCTCCACATCAGACGACTACGATGTTCGGGATTTTGACTCAGCCAATGTAGAGTCGGTGCCAGGTAGAGGAGACAATTTGCTCCCCATGGAGCTCCCTCCCTTGCCCACCGCCCACTCTCAGCCACCGCGCCTCGACATCTCCCAGGGGGGAGACGAGGGAGGCCAGGGGGGGGCGGGCCGCAGCAGCAGCGATGACGTCTCGAGTGGGACCCCGACACAGACACAGGTTTGGGCGGAAACCACATCAAGACCAAGTTGGTTTCTTGGAGCTACCGCTGAGTCGGAGCTGGGGGTGGAAACTTCGAAGCCGTCACAGGTGCTAGAGATCACCACAGAACGGGCCACCCCTGCACCGGGTTGGGAAACCACATCGGGACCGTCGCAGCTTCAAGGGATCACTCCGGAGGTCAACAGCCCAGAGCCAGGCCTGCCGGCCGGGAGCAGAGACATGGGCGAACAAACAGCGGTTGTTTTCAAAGAGGATGTCACCCCTGGAACCACATCTGCGTTTGACCTCGACCAATCACCGGCCGTTCTTGTAGATGGGCAGTCTTCAGCCAAACTCCATCTCATCATCGTTAATGTGCACGAAAAAAACCAATCAGTTGAAAACATCCTGGACATCTTGAACCGGCCGCAGATGGTCGGCTTCCCTCAGATCACTGACCTGTCACAGCTGAGAAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGGAGATGTGGATTCTCTCGAGGTTTCTCCCATCAACCTGCCTCCAACTGTCAGCTTCGTCAATGGGAAACACGAGGTGACGTTAGAGTCGGGGCTGCCGGAGGAAGCCCGAGGAGATCAGTTTGAGACGGCCACACCTGTTCGGGTAGATGAGTtggaagaaaaggaagaagacaCGGAGAAGGAGAGCGCGACTCCCTTTGACTACAGTGTCATAGAAACCCACACAGAGGAGACACCAGAAAAAGAGACACCCACAGAAGAGACAAGTGACAAAGTCCCTCATCCTACAGACATGAACCCGGACGTAGTAACAGACCTGGGCGTCGATGTCTTTACTACCTCAGAGGCAGTCAAATCTCAAGACCCAGGTGATCAGACGGCAACAACGACCCCTTATGTAGCCCCCGTCTCGTCCCCATTGGACTCGGCTACCCCCGGCGTCTCCACCTACGAGGACACGGAAGGCTCTGCGAGCCGCGGCGCTGACGACAAGGTCGCCGGCGTGCAGCAGGAGGGCTCTGCGGACGACGCTTCGCCCACGCCGGCTGCAGGCGCCGTAGTCATGACCGACGAGACCGAAATCGGCGGGACGGAGCTTCCAACTGTCATCCCCGACATGCAGTCCCAGGAAACCACCGCGCAAACGCAAACGGAAGACTTTGAGGCGTCTGGCTCTGGGGAAGACGAAGCTTCGGGATCAGGACAAGGCCCGGCAGAGACGCCCCGGTTAACCACTACGCCACCGCCGGTTTATTCCACCCGTCACACCCAGCGGCCTCAAACTTCGGCGAGTTCAACAGACACAGAAGTGCCTCTAGTTTTACCGGTGGTCGACACGGTCACCGATGCAGACTCAGGTGCGGAGCAGCTGTCCGGACAGGGGGAGGTTTCTGGGGATCAGGGCGCTCCGGTTGGCCATCCCAGAGAGGTCACTGTTACTGTTTCACCAGATGTGGCAGCTGTGGCTTTTGGACACCAAACCACGCTCACCACAGACACAACCTCACAACCAAGCTCACCAAAATATCCCTTTGCTGCCACAGATACGAAAGATCCCGCTTTTATCGCAGAGCTTCACGGAGAACAGACTGAGCAGTCCACCTCAAGCTCCCCGCGGTACGTAAGCCAGCCGACGCTCTCCACTACTTTGCCCTTGTACACTTTCGACCACGACACCCACTCCGTCCCGCAGTGGGCTCTGATCCCTGACCCCGCTGCCACGCCCCTACCCGAGGAAGAGTTTGTGGACTACGACAAAGAGTTGGCGCCTATTCTGCCGGAGTCGCCACCTCAGAAGCCAGACGAAACCCTCTCCACAGAGCAACCGGAGAACGACACGTTCTCGGCTTATTCTGTGGAGGCGAGCACTGTGAACGTCGGAGATTTCCTGCCATGCTCGAGCAGTGTGTGTCAGAACGGAGGTTCCTGCTTCAAAAGAAAAGCCCAAAATATCTGCTTCTGTGCACCTGGATACACCGGGCAGCACTGTGAaactgatgTGGATGAGTGCCACTCTAACCCCTGTCTGAACGGAGCCACCTGTCTGGACGGAGTCGGCTCCTTCACCTGTCTCTGCCTGCCCAGCTACTCCGGAGAGCTCTGTGAACAAGACACTGAGGTCTGTGGATTCGGTTGGCAGAAGTTCCAGTCCCACTGCTACAAGTACTTCTCCCACCGCCGGACGTGGGACGCTGCCGAGAGGGAGTGCCGGATGCACGGCGCCCACCTGGCCAGCATCCTGTCGCAGGAGGAGCAACTCTTCGTCAATCGTCTGGGCAGCGACTACCAGTGGCTCGGCCTCAACGACAAGATGTTCGAGAGAGACTTCAGGTGGACGGATGGCAAGCCGATGCAATACGACCACTGGAGGCCGAACCAGCCCGACAGCTTCTTCCAGTCGGGAGAGGACTGCGTGGTGATGATCTGGCACGAGGGCGGCCAGTGGAACGACGTGCCCTGCAACTACCACCTGACTTTCACCTGCAAGAAGGGGACAGTCTCATGTGGGCAGCCCCCTGTGGTGAAGGATGCTCGCATGTTTGGGACCGTGAAGCCTCGCTACGAGATCAATACCCTGCTCCGCTATCACTGCAAACAGGGCTTCATCCAGAGACACGCCCCCACGATACGCTGCCGGGCCAACAGCCAATGGGACACGCCCAAAGTCACCTGCACAAGCCCCGCGACCTACCACAAGTCGCTCACTCTCCGGCGCCGCAACAAGCAGAACAACGAGCAACCAAACCGGCACCATAGCAATCACATCCATCACGCCGCGACTCACCAGAAACCCAATCAAAaccaagagcagcagcagagttaCAACTTCTTTCAACGCTTCTGGAACCCTTTCCAGAGGGAGAAGAGGCAACAGCCGCAAACACACAGCGGGGATCAGAAGAGACACTGATTTAGAGGGTTcaag
>XM_039779211.1
ttcttCCACTCTTCCTCtcgtaatctctctctctctccctctcaggcTTTCCCTATTCTCACTTCCTCCATCTACACCTCCcatttctctctttgtgtcaccgccccccaccccccctctctctctctccggcaCTGGGCGTCGTATTATCAGGGGAGGTATACGGCCATGTGTGCCCCTCCCTCCTTGTCTGGATAATAGCGGGTGTGAAGTGGATTTGAACTTGCAGCCGCTGCTGAGAGGTGGAAGAGGTCCGAGCTGCACACATCTGTTAGAGAGGAGCTGCTGGAACAAGCCTGTCGCACTCGGTTGGCTTTGGGAAATTTCTTTTGGAAGAGTTTGAAGTGATAAAACTAACCACAGCAACTGGATCTTTGGggtctgttttttcttcttagGATTAAAGATTGTGTTGAGATGATTCCACACGTCCTCACACACCTGCTCTGCTTCGTGTGTCTGAGCGCTGCTCGTCCTCAACCAGCGCCGCCACCCTCGATGACCATGCAGAAGAACCCGCCTGCTTCGACCGGCTCTCTGGCCGGCCGGGTGGTGCTGCCGTGCCACTTCTCCATCGCGCTGCCGCTTCCCCCCAGCAGTTCGCCACACGCTCCGTCATACCCCGCACGACCCCCAGCTCCTCACACCACCCCGAGTCCCGCAGAGGAGCTGAGGATCAAGTGGTCGAAGCTGGAGGAAGCGGAGGAGAAGGTGGTACTGGTGGCGCAGGGGGGCGTGGTAAAGGTGGGGCAGGACTACATGCACAGGGTGACGGTGCCCGGCCAGCCGCTGTTGCTAGGCGACGCCTCCCTGGTGATGGAGCGGCTCCGGGCGAGCGACGCGGGGCTTTACCGCTGTGAGGTGATGCACGGGATGGAGGACACCCAGGACACCGTCACACTCAACGTCACCGGTGTGGTGTTTCACTACAGAGCCAACAGCAGCCGCTACACTCTGGATTTTCCTGTCGCTGTGGAGGCGTGCAGAAACGCAGGAGCATCCATCGCTACGCCCGAACAACTCACTGCTGCTTTTGAGGACGGCTTGGACCGCTGTGATGCAGGCTGGCTCGCCGACCAGTCAGTAAGATACCCAATCACATTGCCCCGTCCCGGCTGTGAAGGTAATCTGATGAGCAGACCCGGGGTGAGAACGTACGGCGTCCGCGACCCTGCGGAGAAATACGACGTGTACTGCTACGTCGATAAAATACAAGGCGACGTCTTCTACCCCCCCTCCGTCAGAGATAAGCTCACCCTGCAGCAGGCCCGAGACGAGTGCGTGAAGCACGACGCCGTGTTGGCGTCTCCCGGTCACCTGTACGCAGCCTGGAGGTCCGGGCTGAACCGCTGCGACTACGGCTGGCTGTCGGACGGCAGCGTGCGCTACCCGGTCACCGTCCCCAGGCCTCAGTGCGGAGGAAACCAGCTCGGGGTTCGCACGCTCTACAAGTATGAAAACCAAACCGGCTACCCAAACCCCAACGACAGGCACGGACTTTTCTGCTTCAAGGCTAAACTTCCAGAGCCAACTACCACAAGTCCACCGACGACCCGGGTTGAAATTCAAACGAGAACCCCAGATCCTGTCCCATATTCACCAACAGAGGGCCCGCACTTAGACCCCCACACTTCCCCTTACACCACAGCCTCCGGGacccccacctccacccccACCTCCACATCAGACGACTACGATGTTCGGGATTTTGACTCAGCCAATGTAGAGTCGGTGCCAGGTAGAGGAGACAATTTGCTCCCCATGGAGCTCCCTCCCTTGCCCACCGCCCACTCTCAGCCACCGCGCCTCGACATCTCCCAGGGGGGAGACGAGGGAGGCCAGGGGGGGGCGGGCCGCAGCAGCAGCGATGACGTCTCGAGTGGGACCCCGACACAGACACAGGTTTGGGCGGAAACCACATCAAGACCAAGTTGGTTTCTTGGAGCTACCGCTGAGTCGGAGCTGGGGGTGGAAACTTCGAAGCCGTCACAGGTGCTAGAGATCACCACAGAACGGGCCACCCCTGCACCGGGTTGGGAAACCACATCGGGACCGTCGCAGCTTCAAGGGATCACTCCGGAGGTCAACAGCCCAGAGCCAGGCCTGCCGGCCGGGAGCAGAGACATGGGCGAACAAACAGCGGTTGTTTTCAAAGAGGATGTCACCCCTGGAACCACATCTGCGTTTGACCTCGACCAATCACCGGCCGTTCTTGTAGATGGGCAGTCTTCAGCCAAACTCCATCTCATCATCGTTAATGTGCACGAAAAAAACCAATCAGTTGAAAACATCCTGGACATCTTGAACCGGCCGCAGATGGTCGGCTTCCCTCAGATCACTGACCTGTCACAGCTGAGAAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGAGGCGGTCCAGGGCAGCGGAGATGTGGATTCTCTCGAGGTTTCTCCCATCAACCTGCCTCCAACTGTCAGCTTCGTCAATGGGAAACACGAGGTGACGTTAGAGTCGGGGCTGCCGGAGGAAGCCCGAGGAGATCAGTTTGAGACGGCCACACCTGTTCGGGTAGATGAGTtggaagaaaaggaagaagacaCGGAGAAGGAGAGCGCGACTCCCTTTGACTACAGTGTCATAGAAACCCACACAGAGGAGACACCAGAAAAAGAGACACCCACAGAAGAGACAAGTGACAAAGTCCCTCATCCTACAGACATGAACCCGGACGTAGTAACAGACCTGGGCGTCGATGTCTTTACTACCTCAGAGGCAGTCAAATCTCAAGACCCAGGTGATCAGACGGCAACAACGACCCCTTATGTAGCCCCCGTCTCGTCCCCATTGGACTCGGCTACCCCCGGCGTCTCCACCTACGAGGACACGGAAGGCTCTGCGAGCCGCGGCGCTGACGACAAGGTCGCCGGCGTGCAGCAGGAGGGCTCTGCGGACGACGCTTCGCCCACGCCGGCTGCAGGCGCCGTAGTCATGACCGACGAGACCGAAATCGGCGGGACGGAGCTTCCAACTGTCATCCCCGACATGCAGTCCCAGGAAACCACCGCGCAAACGCAAACGGAAGACTTTGAGGCGTCTGGCTCTGGGGAAGACGAAGCTTCGGGATCAGGACAAGGCCCGGCAGAGACGCCCCGGTTAACCACTACGCCACCGCCGGTTTATTCCACCCGTCACACCCAGCGGCCTCAAACTTCGGCGAGTTCAACAGACACAGAAGTGCCTCTAGTTTTACCGGTGGTCGACACGGTCACCGATGCAGACTCAGGTGCGGAGCAGCTGTCCGGACAGGGGGAGGTTTCTGGGGATCAGGGCGCTCCGGTTGGCCATCCCAGAGAGGTCACTGTTACTGTTTCACCAGATGTGGCAGCTGTGGCTTTTGGACACCAAACCACGCTCACCACAGACACAACCTCACAACCAAGCTCACCAAAATATCCCTTTGCTGCCACAGATACGAAAGATCCCGCTTTTATCGCAGAGCTTCACGGAGAACAGACTGAGCAGTCCACCTCAAGCTCCCCGCGGTACGTAAGCCAGCCGACGCTCTCCACTACTTTGCCCTTGTACACTTTCGACCACGACACCCACTCCGTCCCGCAGTGGGCTCTGATCCCTGACCCCGCTGCCACGCCCCTACCCGAGGAAGAGTTTGTGGACTACGACAAAGAGTTGGCGCCTATTCTGCCGGAGTCGCCACCTCAGAAGCCAGACGAAACCCTCTCCACAGAGCAACCGGAGAACGACACGTTCTCGGCTTATTCTGTGGAGGCGAGCACTGTGAACGTCGGAGATTTCCTGCCATGCTCGAGCAGTGTGTGTCAGAACGGAGGTTCCTGCTTCAAAAGAAAAGCCCAAAATATCTGCTTCTGTGCACCTGGATACACCGGGCAGCACTGTGAaactgatgTGGATGAGTGCCACTCTAACCCCTGTCTGAACGGAGCCACCTGTCTGGACGGAGTCGGCTCCTTCACCTGTCTCTGCCTGCCCAGCTACTCCGGAGAGCTCTGTGAACAAGACACTGAGGTCTGTGGATTCGGTTGGCAGAAGTTCCAGTCCCACTGCTACAAGTACTTCTCCCACCGCCGGACGTGGGACGCTGCCGAGAGGGAGTGCCGGATGCACGGCGCCCACCTGGCCAGCATCCTGTCGCAGGAGGAGCAACTCTTCGTCAATCGTCTGGGCAGCGACTACCAGTGGCTCGGCCTCAACGACAAGATGTTCGAGAGAGACTTCAGGTGGACGGATGGCAAGCCGATGCAATACGACCACTGGAGGCCGAACCAGCCCGACAGCTTCTTCCAGTCGGGAGAGGACTGCGTGGTGATGATCTGGCACGAGGGCGGCCAGTGGAACGACGTGCCCTGCAACTACCACCTGACTTTCACCTGCAAGAAGGGGACAGTCTCATGTGGGCAGCCCCCTGTGGTGAAGGATGCTCGCATGTTTGGGACCGTGAAGCCTCGCTACGAGATCAATACCCTGCTCCGCTATCACTGCAAACAGGGCTTCATCCAGAGACACGCCCCCACGATACGCTGCCGGGCCAACAGCCAATGGGACACGCCCAAAGTCACCTGCACAAGCCCCGCGACCTACCACAAGTCGCTCACTCTCCGGCGCCGCAACAAGCAGAACAACGAGCAACCAAACCGGCACCATAGCAATCACATCCATCACGCCGCGACTCACCAGAAACCCAATCAAAaccaagagcagcagcagagttaCAACTTCTTTCAACGCTTCTGGAACCCTTTCCAGAGGGAGAAGAGGCAACAGCCGCAAACACACAGCGGGGATCAGAAGAGACACTGATTTAGAGGGTTcaag

Function

symbol description
vcan Predicted to enable protein phosphatase binding activity. Predicted to be an extracellular matrix structural constituent conferring compression resistance. Involved in glial cell migration. Located in extracellular space and membrane. Colocalizes with collagen-containing extracellular matrix. Implicated in intracranial aneurysm.

NR:

description
PREDICTED: versican core protein

GO: NA

KEGG:

id description
K06793 VCAN, CSPG2; versican core protein

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779210.1 True 4911 mRNA 0.59 17 31662472 31713774
XM_039779211.1 False 4896 mRNA 0.59 17 31662472 31713774

Neighbor

gene id symbol gene type direction distance location
cetn3 cetn3 coding downstream 84696 31570678 ~ 31577776 (-)
LOC120545153 LOC103375381 coding downstream 152944 31490547 ~ 31509528 (-)
LOC120545152 NA coding downstream 284302 31357806 ~ 31378170 (-)
xrcc4 NA coding upstream 4141 31717915 ~ 31771254 (-)
zcchc9 zcchc9,LOC102776123 coding upstream 72656 31786430 ~ 31794121 (-)
LOC120545683 NA coding upstream 162583 31876357 ~ 31883183 (-)
LOC120545681 LOC106675582 coding upstream 170418 31884192 ~ 31891634 (-)
LOC120545692 LOC101480093 coding upstream 276722 31990496 ~ 31992816 (-)
G179543 NA non-coding downstream 1877 31656971 ~ 31660595 (-)
G179537 NA non-coding downstream 82195 31560596 ~ 31580277 (-)
G179530 NA non-coding downstream 113857 31548080 ~ 31548615 (-)
LOC120545159 NA non-coding downstream 116051 31527352 ~ 31546421 (-)
G179517 NA non-coding downstream 172109 31486693 ~ 31490363 (-)
G179548 NA non-coding upstream 32879 31746653 ~ 31747310 (-)
G179546 NA non-coding upstream 43512 31757286 ~ 31757803 (-)
G179551 NA non-coding upstream 69641 31783415 ~ 31783657 (-)
G179603 NA non-coding upstream 118781 31832555 ~ 31832863 (-)
G179608 NA non-coding upstream 146302 31860076 ~ 31873465 (-)
G179540 NA other downstream 47054 31614767 ~ 31615418 (-)
grk3 grk3,LOC107396329,LOC107101402 other downstream 575074 30970059 ~ 31087398 (-)
LOC120544905 LOC103372244,LOC108245379,LOC101072387 other downstream 1094442 30532888 ~ 30568030 (-)
G179135 NA other downstream 1326736 30328395 ~ 30335736 (-)
polm polm other downstream 1609248 30039560 ~ 30053224 (-)
LOC120545078 LOC108242566,LOC106513792 other upstream 294864 32008638 ~ 32039414 (-)
G179676 NA other upstream 369594 32083368 ~ 32085329 (-)
G179746 NA other upstream 558529 32272303 ~ 32279386 (-)
LOC120545733 LOC106530903,LOC101466162,LOC102799643,LOC108242569,LOC107395286 other upstream 938987 32652761 ~ 32671947 (-)
dusp11 LOC107080835 other upstream 964215 32677989 ~ 32689245 (-)

Expression


Co-expression Network