actr1b (LOC103372992,LOC108231047,LOC106524406,LOC100691670,LOC102228756,LOC107104695,LOC101074115)


Basic Information

Item Value
gene id actr1b
gene name LOC103372992,LOC108231047,LOC106524406,LOC100691670,LOC102228756,LOC107104695,LOC101074115
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32250909 ~ 32275666 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039780269.1
agagagagagagagagagagagagaatcagcGGCGTCGAGACAGCACAGTGCGGAGTGACAGCGCGTTATCTTTTACATGATTAAAACACTGCGCGGGGAGGAATACGCACACGGATCGATAGAAACATATCTTCAATATCTAGTCCGTCATGGAGTCCTATGACATTTTAGCTAACCAGCCCGTTGTGATTGATAATGGTTCGGGGGTTATCAAAGCTGGTTTTGCCGGTGACCAGATCCCCAAATACTGTTTCCCCAACTACGTGGGACGTCCCAAGCATGTGCGCGTGATGGCAGGAGCCCTGGAGGGGGACCTCTTCATCGGACCCAAGGCAGAGGAGCACCGGGGCTTGCTGTCGGTGCGGTACCCGATGGAGCACGGCATAGTGAAGGACTGGAACGACATGGAGAGGATCTGGCAGTACGTCTACTCCAAGGAGCAGCTGCAGACGTTCTCGGAGGAGCATCCTGTGCTGCTGACCGAGGCTCCTCTCAACCCCAGCAAGAACAGAGAGAAGGCCGCAGAGGTTTTCTTTGAGACCTTCAACGTTCCCGCTCTCTTCATCTCCATGCAGGCTGTCCTCAGCTTGTACGCCACAGGCCGGACCACCGGCGTGGTGCTGGACTCGGGCGACGGCGTGACCCACGTGGTGCCCATCTACGAGGGCTTCGCCATCCCGCACTCCATCATGCGCGTGGACATCGCCGGGCGAGACGTGTCGCGGTACCTGCGCCTGCTGCTGCGCAAAGAAGGCTACAACTTCAACACCTCGGCCGAGTTCGAGGTCGTCCGCACCGTCAAAGAGAGAGCCTGTTATCTGTCTCTCAACCCACAAAAGGACGAGACTTTAGAAACGGAGAAGGCGCAGTACGTACTGCCGGACGGAAGCACTTTAAACaTCGGGCCGGCGAGGTTCCGGGCGCCGGAGCTGCTGTTCAGGCCCGACCTGATCGGAGACGAGAGCTCGGGGATCCACGAGGTCCTGGCGTACGCCATCCAGAAGTCGGACATGGACCTGCGGCGCACGCTCTACTCCACCATAGTGCTGTGTGGCGGCTCCACCCTCATCAAAGGTTTCGGGGAACGACTACTAACTGAAGTCAAGAAGCTGGCACCCAAAGACGTGAAGATCAAGATTTCTGCCCCCCAAGAGAGGCTCTACTCCACATGGATTGGCGGCTCCATCCTGGCATCGCTGGACACCTTCAAGAAGATGTGGGTGTCGAAGCGAGAATACGAAGAAGACAGAGCACGTGCCATCCACAGGAAGACCTTCTAGTAGGCCCGCCCCCCGCCCCGAAACTGCcctcaaaccccccccccatcacaCTGTGGGAGACGCCTGCGCCCTGTCATCTCCCGGGTACCTCTTGCGTCATCTCAAAACCCCCACAATCCCCTGCTTCTACACTCCTGTCAGCCTCCTGCTTTACCCAGAGAAACGTGCACCGCTATGTGTGCTAGTTTCTATATTTACCTCCTTTCTCATTCGCCTCCTAGCTCCCCCTaccctcccccttttttttgttttttttgaaccCCCTCTGTAGGGTGACGATGGCGGCTACCCTCGGCGCTCCAAgcaatccccccaaaaaaagttcCCATCCGGAGGGCCGTCGGGGGGGGGTATCTGAGAGGGGGTATCTTGTGGACTCTTTCACTACAGGTTGTTCTATATGATTAATAATTGAGTCCACGTTGAAGTATTGGTATCGCTCTCTCGCCTACAAAAAGCTCCGCAAAGTGTAGAATATcatgaaatgtcaataaacctgaatgtgttttttttttgtttttttgctactGTTGAAAATTCTCCATTCCAGACCGaagatttagatttttaattttatgtctgtttctgtagatttttctttttctgttcgcTGACAGCTGCTGCCTGGAAGacaacgttgggggcttaaaacaccaaagaccTTCCTGACATGGATCGGCTCGTACAGAACCAAGGTCTGAagagccatatatatatatatatatatatatatatacacatgtttTTCCAGCCTTGCAGCAAAGTGAACGTGTTAATTTATCAGCCCAATTTATTCCCAACGAAATGTTTCGAAGTGAACGTGACATCCGAGCGGTTGtgtgatgatgaggatgatgatgatgtcggGGTCGTTTTTAAGTCGGCTTTTTTTGTCTCAGCCGACGGGATTAAAAAAACGGTGTAGAAAAATGCCTTcgttcatttctttcttttgtttttgagaAATCCATCGTCTGGTTCAGCGTGTTCCCAGCAGCCGATGGGCCCGCTTTCAAAAGGAGGAAtacggttttatttttattttatttattttttcggGGTTTTATTCTCAAGAATTGTGGTTGTCTGACGGAGTCGGAGTGACGCAGAGGAAAAGAGTGAAAAACTGTGGCGGGAGGAAAGATGTATCGGGGGGGGGGCTGGGAGGGGAGCAGCACGAGTCTCCCAAAGATTCCCAACGCCACTTCAAATTCACTTTAAAAACTTccaaaacatttcacacattcGTCTCTGAGTTCTAAACGGAAGTAAACGCAGAAAGTAGCCCCGTGGAACTGCTCACTAGTCCTCGAGTCCTGGACTAGGACTGGACTAGTCCTCGAGTCCTGGACTAGGACTTGAGTCCTGGACTAGGACTCGAGGACTAGTCCAGTCCCTATTCTGTGGACTCGTGACATGACTTGGACTCAGACGCAAGCATTTATGAAATAGGACTCAGAagttggatgaagtttctgactaCTTTCATGTGTAATAGGCGGTGATGGAGTCCTCGAGTCCTGGACTAGGACTGGACTAGTCCTCGAGTCCTGGACTGGGACTCGAGGACTAGTCCAGTCCCTATTCTGTAGACTCGTGACATGACTTGGACTCAGACTCGAGCATTTATGAAATAGGACTCGGAAGTTTGATGAAGTTTCTGACTACTTTCATGTGTAATAGGCGGTGACGGAGTCCTCGAGTCCTGGACTAGGACTGGACTAGGACTTGAGTCCTGGACTAGGACTCGAGGACTAGGACTTGAGTCCTGGACTAGGACTCGAGGACTAGGACTTGAGTCCTGGACTAGGACTCAAGGACTAGTCCAGTCCCTATTCTGTGGACTTGTGACATGACTTGGACTCAGACTCAAGCATTTATGAAATAAGACTCGGAAGTTGGATGAAGTTTCTAACTACTTTCATGTGTAATAGGCGGTGATGAAGTCCTCGAGTCCTGGACTAGGACTGGACTAGTCCTCGAGTCCTGGACTAGGACTGGACTAGGACTCTTCTTTAGTGACTCAAACTCCAACACGGAGGATTCAAGACTTGACTTTGACTCGACAGTTGGTGACTCGACTACAACGGTGCTGCCGTGTCTACacaattatttttgtaattCGCGGTCAGTAATTTATCTGAAATCATATCTAAGTCTTGAGTTAATATTAAAGGGAAGGATAATCACAGGAGGGTGAATGTCAACGTTCAGTCGGGATACTGTTtcaaaacgtcaaaaaaattaattgaaatgcaaaaaaaaatgtaataaaacacccaaaattcagtAAAAATAGAGATCcgatcttttgttgtacttgtgAAGCGCGTTGTGTGGAATCATCCGTGTTATTTTTGACCAATCGAAATGAGGTCGTTGAGAAGAAGCTCCATATTTCTGATGTAGACATTTTagaaaaatgggtcaaatctgtaagggctgctccctcttagtcgatcaGTGgtctaatcggtggttttggtcttagtcagcttagatctctttagtccattagtcatgtctgatgcttttTTGGGTACTTTCTGTGTTGATCTTTGGTTAAACTCAGTGACAAGTGTTTGAAATATTATCTGTAGGATGgaagttgatttaaaaaaaaaaaaaagcttgaagAGGCAAAGGCCCAGAGTCGGAAGTTATTTGGAGTGTCCCGACCAGCCGACGATGTTAAAGCGAAGTAGCTGTCCCGACTTCGGGCTGGGTACCGATTAACGGTACCGTCGCTTTAAGAAATGACATCATGACAACATGATCGTAGTATTTATGTCTCAGCTCCGACTACGTGAGCCCCCGTCTCTCGGAGTATCGTAGActtgtctctacgacgtgtaacgttagacagccaatcgcAGACATTATTACATctcggtagaagcatgctgcgtgctgattggctccctgacgctgatgagattttgTGTTGAAATTGGGTATCGAGCGATGAGGCTTTTTAACGCGATACTTTTTGGTAGGAGCCTTTGGAccatttttgccattttttttttcccaagtttttgtctcctattttttaaatttaatttcagttcaattttaaaaaatgttttgtttcgtACGGTTTTGTGGGGGGGTGGTTCcacgtttttgtcgccttttttcaaGGTTTCTTTTCGACAGTTCTTTTGACATTTCTCTCGCCTTTTTTCTAAAGTATTTTAtggagagagacaaaaaaagagagtttttttcgcctttttcaaaacaaattctCGCTTTTGCTTTTTCAGAgggttttttttcaacttttttgtcgctttttttagTTGAATGTTGAACCCGAAGTTACGCCCTTGCTAATAAAGTactgaattcggtacccagccctaatctgAGACCCCGAGTCCCCTCCACGCCCCCGCCCCCACCCCCCACTCGTCTGTTTAAAACTTGAGATGCATGATGGTTAACTGTGTCCAGTTAACGATCTCCATGGAGACAGGAAGCCTGGAGTCTGGATGAAGAAACGCTGCAGAAAGCCCTCCCTCCCCCATGTCTCTATGTCGTAGTAAAAGTCTGGATCTTCTGATGTCCCAGCGTCTCGGTGGCAGTGAAGGGGTcgtgaccccccccccacacccccacccacccccgcGCCGGGAGCATCTGCGTCTCGTCCgctttttgggtgtttttaaaaaatatttcaaaggaaaaaaaaaaggttgggaaacGTCATCAGCCTTGTGTACAGTGGGATGCTTTTcaaaaacaacccccccccccacacacacacacaca

Function

NR:

description
PREDICTED: beta-centractin

GO:

id name namespace
GO:0005856 cytoskeleton cellular_component
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function

KEGG:

id description
K16575 ACTR1, ARP1; centractin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039780269.1 True 5061 mRNA 0.48 11 32250909 32275666

Neighbor

gene id symbol gene type direction distance location
LOC120545706 LOC106676976 coding downstream 248656 31999704 ~ 32002253 (-)
LOC120545692 LOC101480093 coding downstream 258093 31990496 ~ 31992816 (-)
LOC120545681 LOC106675582 coding downstream 359275 31884192 ~ 31891634 (-)
LOC120545683 NA coding downstream 367726 31876357 ~ 31883183 (-)
zcchc9 zcchc9,LOC102776123 coding downstream 456788 31786430 ~ 31794121 (-)
stc1l LOC103372998 coding upstream 119590 32395256 ~ 32398673 (-)
LOC120545695 LOC103389350,LOC103373000,LOC101073739 coding upstream 130700 32406366 ~ 32438988 (-)
wdr45 wdr45,LOC102779567 coding upstream 181654 32457320 ~ 32470155 (-)
LOC120545709 NA coding upstream 262844 32538510 ~ 32545567 (-)
LOC120545080 LOC104959728 coding upstream 431965 32707631 ~ 32718404 (-)
G179742 NA non-coding downstream 29875 32217935 ~ 32221034 (-)
G179735 NA non-coding downstream 35640 32133381 ~ 32215269 (-)
G179682 NA non-coding downstream 125527 32118187 ~ 32125382 (-)
G179681 NA non-coding downstream 147269 32103187 ~ 32103640 (-)
G179679 NA non-coding downstream 150595 32099819 ~ 32100314 (-)
G179757 NA non-coding upstream 8382 32284048 ~ 32379233 (-)
G179754 NA non-coding upstream 14843 32290509 ~ 32293447 (-)
G179739 NA non-coding upstream 31179 32306845 ~ 32310985 (-)
G179764 NA non-coding upstream 35632 32311298 ~ 32355084 (-)
G179769 NA non-coding upstream 66252 32341918 ~ 32343271 (-)
G179676 NA other downstream 165580 32083368 ~ 32085329 (-)
LOC120545078 LOC108242566,LOC106513792 other downstream 211495 32008638 ~ 32039414 (-)
G179540 NA other downstream 635491 31614767 ~ 31615418 (-)
grk3 grk3,LOC107396329,LOC107101402 other downstream 1163511 30970059 ~ 31087398 (-)
LOC120544905 LOC103372244,LOC108245379,LOC101072387 other downstream 1682879 30532888 ~ 30568030 (-)
LOC120545733 LOC106530903,LOC101466162,LOC102799643,LOC108242569,LOC107395286 other upstream 377095 32652761 ~ 32671947 (-)
dusp11 LOC107080835 other upstream 402323 32677989 ~ 32689245 (-)
LOC120545708 NA other upstream 438422 32714088 ~ 32736568 (-)
G179923 LOC106675582 other upstream 442181 32717847 ~ 32851610 (-)
LOC120545725 NA other upstream 515029 32790695 ~ 32851925 (-)

Expression


Co-expression Network