LOC120545080 (LOC104959728)


Basic Information

Item Value
gene id LOC120545080
gene name LOC104959728
gene type coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053128.1
NCBI id CM020925.1
chromosome length 37416781
location 32707631 ~ 32718404 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>XM_039779071.1
atggcgcagaaaAGAGTTCAGCTCGACCTGgaaaccttctcttgttccatctgtctggatctactgaaggtTCCGGTGActactccctgtggacacagctactgcatgaactgtattaaaagccactggGATGGAGAGGATAGTAAGTCCAGCTACAGCTGTCCTCAGTGCAGGACGACgttcacaccgaggcctgtcctgctgaaaaacaccatgttagcagatttagtggaggagctgaagaagactggactccaagctgctcctgctgatcactgctatgctggagctgaagatgtggcctgtgatgtctgcaccgGGAGAAAACTCAAAGGATACAAGTCCTGTCTGCAATGTCTGGCTTCTTTCTGTGAGAAACATCTTCAGCCTCATTATGAATCAGAGACATTCAAGAAgcacaagctggtggagccgtccaagaagctccaggagaacgtctgctctcgtcatgatgaggtgatgaagattttctgccgtactgatcagcagcttatctgttatctctgctctgtggaggaacataaaggccacgacacaACAGTGGCtgtgtcagaagtcagagataagCAGAAAAGGACAAACgtctcactgacagggactgaagtggatgttttactgccacaaccagagcccaatgtgatttcacgtgaatattttaagaattcAGCTCTGGTCTGGGGCTCTGGTTGTGGCAGTAAAACGTCCACTTCAGTCCCGGTCAGTGAGACATTTGTCCACTTCTCTATCAGAacgtcctgtagtttatctctgacttctgacatGGCCGCTGTCATgtcctcaaagcagctcagaggGGATGATGGTGTTGATTGGCTGGTGTGA

Function

NR:

description
PREDICTED: tripartite motif-containing protein 16-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_039779071.1 True 864 mRNA 0.49 2 32707631 32718404

Neighbor

gene id symbol gene type direction distance location
LOC120545709 NA coding downstream 162064 32538510 ~ 32545567 (-)
wdr45 wdr45,LOC102779567 coding downstream 237476 32457320 ~ 32470155 (-)
LOC120545695 LOC103389350,LOC103373000,LOC101073739 coding downstream 268643 32406366 ~ 32438988 (-)
stc1l LOC103372998 coding downstream 308958 32395256 ~ 32398673 (-)
actr1b LOC103372992,LOC108231047,LOC106524406,LOC100691670,LOC102228756,LOC107104695,LOC101074115 coding downstream 431965 32250909 ~ 32275666 (-)
LOC120545082 LOC101480093 coding upstream 34019 32752423 ~ 32754563 (-)
trappc1 trappc1 coding upstream 215840 32934244 ~ 32940290 (-)
LOC120545084 NA coding upstream 231638 32950042 ~ 32955431 (-)
helq helq coding upstream 291312 33009716 ~ 33102359 (-)
LOC120545728 NA coding upstream 397888 33116292 ~ 33121675 (-)
G179916 NA non-coding downstream 30159 32675201 ~ 32677472 (-)
G179812 NA non-coding downstream 72955 32634402 ~ 32634676 (-)
G179803 NA non-coding downstream 149981 32553674 ~ 32557650 (-)
G179790 NA non-coding downstream 179150 32528250 ~ 32528481 (-)
G179785 NA non-coding downstream 221417 32485090 ~ 32486214 (-)
LOC120545738 NA non-coding upstream 46621 32765025 ~ 32765286 (-)
G179935 NA non-coding upstream 94664 32813068 ~ 32818600 (-)
G179951 NA non-coding upstream 228656 32947060 ~ 33017973 (-)
G179954 NA non-coding upstream 228988 32947392 ~ 32948152 (-)
G179953 NA non-coding upstream 229972 32948376 ~ 32948882 (-)
dusp11 LOC107080835 other downstream 18386 32677989 ~ 32689245 (-)
LOC120545733 LOC106530903,LOC101466162,LOC102799643,LOC108242569,LOC107395286 other downstream 35684 32652761 ~ 32671947 (-)
G179746 NA other downstream 428245 32272303 ~ 32279386 (-)
G179676 NA other downstream 622302 32083368 ~ 32085329 (-)
LOC120545078 LOC108242566,LOC106513792 other downstream 668217 32008638 ~ 32039414 (-)
LOC120545725 NA other upstream 72291 32790695 ~ 32851925 (-)
LOC120545085 NA other upstream 239447 32957851 ~ 32968150 (-)
hpse NA other upstream 273971 32992375 ~ 33004529 (-)
LOC120545720 NA other upstream 375665 33094069 ~ 33096229 (-)
LOC120545090 NA other upstream 586210 33304614 ~ 33678810 (-)

Expression


Co-expression Network