G182980


Basic Information

Item Value
gene id G182980
gene name NA
gene type non-coding
species eurasian perch (Perca fluviatilis)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8040623 ~ 8041804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome

Sequence

>TU247814
attgcatgacataagtatttgatacatcagaaaagcagaacttcatatttggtacagaaacctttgtttgcaattaaagagatcatacgtttcctgtagttcttgaccaggtttacacactgcagcagggattttggcccactcctccataACAACCTTTTCCAGATCCTTCAGGTTtcggggctgtcgctgggcaatacggactttcagctccctccaaagattttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttatggagccactccttagttgccctggctgtgtgttttgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgctcttactgagggaaggaggttgttggccaagatctcacgatacatggccccatccatcctcccctcaataCAGTGCACTCGTCCtgtcccctttgcagaaaagaatccccaaagaatgatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcttcttcctccaaacacggcgagtggagtttagaccaaaaagctctattttCTTCTCATCAGACTAAATGACcttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgcgcTGGCTTGAGCAGGGGGTCCTTGCGTGTGCTGCAGGATTTTAGTCCATGACAgcgtagtgtgttactaatggctttctttgagactgtggtcccagctctcttcagGTCATTGACGAGGTCCTGCCGTGTAGTTCTGGGCTGATCCCTCACGTCAATATTGATGCCCCAtgaggtgagatcttgcattGTGTCCCAGACCGAGGGAGATTGACCTTCATcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagcactctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtgttttatacaggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU247814 True 1182 lncRNA 0.48 1 8040623 8041804

Neighbor

gene id symbol gene type direction distance location
cnih3 cnih3,LOC108248696,LOC101155158,LOC107095392,LOC106527994,LOC107384796,LOC100708389,LOC103358879,LOC101472542 coding downstream 452558 7444861 ~ 7588065 (-)
meis2b LOC104938729,LOC103355645,LOC105017579 coding downstream 1239830 6762711 ~ 6800793 (-)
LOC120546794 NA coding downstream 1575821 6462940 ~ 6464802 (-)
LOC120546792 LOC104959018 coding downstream 1967403 6070546 ~ 6073220 (-)
gopc gopc coding downstream 2031183 5986437 ~ 6009440 (-)
LOC120546734 cd2ap coding upstream 209912 8251716 ~ 8340747 (-)
LOC120546378 NA coding upstream 507375 8549179 ~ 8550180 (-)
LOC120546379 LOC103375580 coding upstream 516665 8558469 ~ 8559470 (-)
LOC120546380 NA coding upstream 523339 8565143 ~ 8566141 (-)
LOC120546382 NA coding upstream 530599 8572403 ~ 8573320 (-)
G182962 NA non-coding downstream 187022 7852984 ~ 7853601 (-)
G182958 NA non-coding downstream 202888 7837522 ~ 7837735 (-)
G182957 NA non-coding downstream 203826 7836593 ~ 7836797 (-)
LOC120546796 NA non-coding downstream 654336 7349782 ~ 7386287 (-)
G182916 NA non-coding downstream 682796 7351008 ~ 7357827 (-)
G182983 NA non-coding upstream 5696 8047500 ~ 8047938 (-)
G183006 NA non-coding upstream 149374 8191178 ~ 8191474 (-)
G183013 NA non-coding upstream 203761 8245565 ~ 8245765 (-)
G183027 NA non-coding upstream 389558 8431362 ~ 8431674 (-)
G183042 NA non-coding upstream 437108 8478912 ~ 8479346 (-)
G182977 NA other downstream 15579 8024715 ~ 8025044 (-)
G182952 NA other downstream 274237 7761565 ~ 7766386 (-)
G182764 NA other downstream 1339506 6700491 ~ 6701117 (-)
cgrrf1 NA other downstream 1771480 6232742 ~ 6269143 (-)
G182502 NA other downstream 2128714 5911312 ~ 5911909 (-)
opn5 opn5,LOC102784832,LOC100710023,LOC102313452,LOC104967814,LOC106933152,LOC108249775 other upstream 7654 8049458 ~ 8126664 (-)
LOC120546397 NA other upstream 739524 8781328 ~ 8787218 (-)
LOC120546609 LOC104943934,LOC103373611,LOC100711814,LOC102780583,LOC101487794,LOC102295678 other upstream 979156 9020960 ~ 9024565 (-)
G183176 NA other upstream 1087769 9129573 ~ 9133472 (-)
LOC120546281 LOC107372644,LOC107099224,LOC106591698 other upstream 2057674 10099478 ~ 10101061 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G15980 NA non-coding CI01000001 null 5571923 ~ 5572212 (+)
rainbow trout (Oncorhynchus mykiss) G948814 NA non-coding NC_048575.1 CM023229.2 16958192 ~ 17158652 (+)
bowfin (Amia calva) G109011 LOC100846954 non-coding CM030134.1 CM030134.1 2436058 ~ 2518534 (+)