RNA id: TU247814


Basic Information

Item Value
RNA id TU247814
length 1182
lncRNA type inter_gene
GC content 0.48
exon number 1
gene id G182980
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8040623 ~ 8041804 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

attgcatgacataagtatttgatacatcagaaaagcagaacttcatatttggtacagaaacctttgtttgcaattaaagagatcatacgtttcctgtagttcttgaccaggtttacacactgcagcagggattttggcccactcctccataACAACCTTTTCCAGATCCTTCAGGTTtcggggctgtcgctgggcaatacggactttcagctccctccaaagattttctattgggttcaggtctggagactggctaggccactccaggaccttgagatgcttcttatggagccactccttagttgccctggctgtgtgttttgggtcgttgtcatgctggaagacccagccacgacccatcttcaatgctcttactgagggaaggaggttgttggccaagatctcacgatacatggccccatccatcctcccctcaataCAGTGCACTCGTCCtgtcccctttgcagaaaagaatccccaaagaatgatgtttccacctccatgcttcacggttgggatggtgttcttggggttgtactcatccttcttcttcctccaaacacggcgagtggagtttagaccaaaaagctctattttCTTCTCATCAGACTAAATGACcttctcccattcctcctctggatcatccagatggtcattggcaaacttcagacgggcctggacatgcgcTGGCTTGAGCAGGGGGTCCTTGCGTGTGCTGCAGGATTTTAGTCCATGACAgcgtagtgtgttactaatggctttctttgagactgtggtcccagctctcttcagGTCATTGACGAGGTCCTGCCGTGTAGTTCTGGGCTGATCCCTCACGTCAATATTGATGCCCCAtgaggtgagatcttgcattGTGTCCCAGACCGAGGGAGATTGACCTTCATcttgaacttcttccattttctaataattgcgccaacagttgttgccttctcaccaagctgcttgcctattgtcctgtagcccatcccagccttgtgcaggtctacaattttatccctgatgtccttacacagcactctggtcttggccattgtggagaggttggagtctgtttgattgagtgtgtggacaggtgtgttttatacaggtaacgagttcaaacaggtgcagttaatacaggtaatgagtggagaacaggagggcttcttaaagaaaaac

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247789 lncRNA downstream 187022 7852984 ~ 7853601 (-) True G182962
TU247785 lncRNA downstream 202888 7837522 ~ 7837735 (-) True G182958
TU247784 lncRNA downstream 203826 7836593 ~ 7836797 (-) True G182957
XR_005636939.1 lncRNA downstream 654336 7374840 ~ 7386287 (-) True LOC120546796
TU247732 lncRNA downstream 682796 7351008 ~ 7357827 (-) False G182916
TU247823 lncRNA upstream 5696 8047500 ~ 8047938 (-) True G182983
TU247822 lncRNA upstream 7774 8049578 ~ 8049985 (-) False opn5
TU247850 lncRNA upstream 149374 8191178 ~ 8191474 (-) True G183006
TU247857 lncRNA upstream 203761 8245565 ~ 8245765 (-) True G183013
TU247873 lncRNA upstream 389558 8431362 ~ 8431674 (-) True G183027
XM_039782002.1 mRNA downstream 452558 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA downstream 452558 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA downstream 452558 7444861 ~ 7588065 (-) True cnih3
XM_039781984.1 mRNA downstream 1239830 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 1575821 6462940 ~ 6464802 (-) True LOC120546794
XM_039780984.1 mRNA upstream 7654 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 7654 8049458 ~ 8126664 (-) True opn5
XM_039781890.1 mRNA upstream 209912 8251716 ~ 8340747 (-) True LOC120546734
XM_039781889.1 mRNA upstream 209912 8251716 ~ 8340744 (-) False LOC120546734
XM_039781892.1 mRNA upstream 209912 8251716 ~ 8306809 (-) False LOC120546734
TU247804 other downstream 15579 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 274237 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1007221 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1008900 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1010577 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 741984 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1087769 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2057799 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 2460116 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 2478913 10520717 ~ 10521410 (-) True G183528

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
grasscarp (Ctenopharyngodon idella) TU17872 True 290 lncRNA 0.41 1 CI01000001 5571923 ~ 5572212 (+)
rainbow trout (Oncorhynchus mykiss) TU1081914 True 1415 lncRNA 0.46 2 NC_048575.1 16958192 ~ 17158652 (+)
bowfin (Amia calva) TU136404 True 1755 lncRNA 0.44 3 CM030134.1 2436058 ~ 2452829 (+)