RNA id: XM_039781890.1


Basic Information

Item Value
RNA id XM_039781890.1
length 2434
RNA type mRNA
GC content 0.55
exon number 19
gene id LOC120546734
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 8251716 ~ 8340747 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

TTCCATTAAACATTCCTCTCGCGGGACTGTCCTGGTTGAAACATCGCGAAGTTTCCTGCTATTTAGTATTTTGGTGGTGGTGGCAGCGGCAAGCCATAAGCAACGAAAGTCCAAGTCCAAGAAAGGTGGAGACTCCTGGTTAACTTCCTGCCCAATACTGTTGAAGCACCACCAAGAGAGAACTGGGGACGCTGCTGCTGAGGCtgctttctgctgctgctgctgctggggctgCTGCTGGGGCAAGGACGAATGGATATACCGCTCACTTTAATAGTTTTCCGGCAGTGAATCGACTAAAAACACTTTGTTGTTGATTGTACACCTACTTGGCTAGACGGAAGCTAGCAGTGAGGCTGTACGAGATTCCAAACATTGGATAGCGAGGCGGTGCGAAGACAGGAATGGAGGTCGTGGTGGAGTATGAGTACGAGGCGCTCCATGAAGACGAGCTGACGCTGCGACTGGGTGACATCATCAAGAACGTGCGGTACATAGAGGAGGATGGCTGGATGGAGGGAGACCTTAACGGGAAAAGGGGCCTCTTCCCCGACAACTTTGTCAAGGAACTGAAGAAGGAATCCAAAGAGGTCAAGGAAACAAAGAATGAGCCCAAAGAGGAGGCCTCTCATCctcagaagagagagaagagtgcaGGAAACGTGGCCAACCTGGTTCAGAGGATGAGCTTTATCGGCATCCCGACTGGTGGCTTCCTGCCTCAGCCGCCAGCAGCTGCAAAGAAGCCTAAGAAGAGACAGTGCAAGGCTCTCTTTGACTATCAGCCGCAGAACGAAGATGAGCTGGAGCTGAAAGCCGGAGACATCATAGACATCACTGAAGAGGTTGAAGAGGGCTGGTGGAGCGGCGACTTGAACGGCAAGTCAGGACTGTTTCCCTCCAACTTCGTCAAAGAGCTGGACGCCACGGGAGAGGACGGCGAGTCCAACGACACGGCGGCAGATGAGACGGATGGAAGTGGAATGGAAAGCGTCCCCACCCCCACATCCCCTCAACCTGCCTCAGGGAACGGAGTCATAGCTCAGCCCAAGAAGATCCGAGGCGTTGGCTTCGGAGATATTTTCAGAGAAGGGTCGGTCAAACTAAAGGCCCGGCTGCCAAGCTCCGAAACCGAGGAAAAGAAGGCGAGACCAATCCCATCATTACCATCTGCTGCAAAGCCCGCCCATCCCAACGTGACCGACTCGCAGAGAGCAGACGGAGACAGCAAATCCAAAGCAAAAGAGTACTGTAAGGTCACATTTGCTTTTGAGGCTACAAATGAGGATGAGCTGACCATAAAAGAGGGCGATATCATCCACATCCTGAGCAAGGACACAGGAGAGCCCGGCTGGTGGCGAGGGGAGATCGGGGGCAGGGAGGGTGTCTTCCCTGACAACTTTGTAGCCATGGTGACTGATGCAGAGAAAGAGACGCCCACGTCGAGAATGTCACTGAGATCATCTCCCAAGCAGGAGTCTGAAGAGCCGAAGAAGCCACCTCCACCATCAAAAAGCATAGCTCCCAAGCCGGAGGTTCCCAGTGCCGACAAGAAGCCGGTTCCCATCATGCCAGAGTACAAAGTTGACAAACCGACCCCAGATCACAAACCATCCAAGCCTGCAGCGCCTTTGGTCCCGCCTAAGAAGCCGGTCCCCCCTCCTGGGAAAGGCAGGCCAGGTAGCATCCCACCAAAGAGGCCAGACAAGCCTCTTGCTCCCTCGCCAAGCCTCAAGCACAATGGAGAGGTGCCTTCCACACGACCAAAGTTAGACTTTGAGCCATCATTGCCCCCCAAACCCAAAACTCTGTCTGGGGACTGGGCGGAGAAGTCTTCGGATGTGGATCTGATGAGTTTTGATGAGTTGTCGTCTACCTCGGAGAAGCTCTCTCACCCCACTGCTAACAGACCAAAGATGCCTGGCAGGAGGCTACCCGCCCAGTTTGGTGGAGCACAATCGCCCAACAAGGAAGTGAACGTGGAGAAATCCTTCAAGGTTGATGAAGAGGATGCTGCCAAACCAAAACTAACAGAAACCAGAAAGCCTTCCACAAACACGTTATCCCAGTCACCGTCACCCCACAGGCCCGCCACGGCCAGCACCGAGGCCAAGCCGAGCCCTGCAGCAACCCCAAGCTCAGACAGCGCGTCGCAGGCTAGCAGGACCCGGCTGGAGCCCGAAGAGCCGAACTCGGAGCTGGACGAGCTGAAGAGCCAGATGAAGGATCTGCTGCTGTCTGTGGAGCTGCTCAAGGCCCAGCAAATGAAAGAGATATCGGAGCTACGAGGAGAGCTGGATGAGGAAAGGCTGAAGCGTGTTGCTCTGCAGATGGAGATAGAAAAACTGAAGCGGACCATCCACTCGACGTGAAGCCCGCAGTCGGCTGCTGGGCTGTCGACCAACCGGCGGTGACGGACGGATCGCTGAATGGG

Function

GO: NA

KEGG:

id description
K13738 CD2AP; CD2-associated protein

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247857 lncRNA downstream 5951 8245565 ~ 8245765 (-) True G183013
TU247850 lncRNA downstream 60242 8191178 ~ 8191474 (-) True G183006
TU247822 lncRNA downstream 201731 8049578 ~ 8049985 (-) False opn5
TU247823 lncRNA downstream 203778 8047500 ~ 8047938 (-) True G182983
TU247814 lncRNA downstream 209912 8040623 ~ 8041804 (-) True G182980
TU247873 lncRNA upstream 90615 8431362 ~ 8431674 (-) True G183027
TU247940 lncRNA upstream 138165 8478912 ~ 8479346 (-) True G183042
TU247969 lncRNA upstream 430541 8771288 ~ 8771585 (-) True G183068
TU248059 lncRNA upstream 657828 8998575 ~ 8998828 (-) True G183136
TU248075 lncRNA upstream 680232 9020979 ~ 9024565 (-) False LOC120546609
XM_039780984.1 mRNA downstream 125052 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA downstream 125052 8049458 ~ 8126664 (-) True opn5
XM_039782002.1 mRNA downstream 663651 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA downstream 663651 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA downstream 663651 7444861 ~ 7588065 (-) True cnih3
XM_039781305.1 mRNA upstream 208432 8549179 ~ 8550180 (-) True LOC120546378
XM_039781306.1 mRNA upstream 217722 8558469 ~ 8559470 (-) True LOC120546379
XM_039781307.1 mRNA upstream 224396 8565143 ~ 8566141 (-) True LOC120546380
XM_039781309.1 mRNA upstream 231656 8572403 ~ 8573320 (-) True LOC120546382
XM_039781310.1 mRNA upstream 246595 8587342 ~ 8588259 (-) True LOC120546383
TU247804 other downstream 226672 8024715 ~ 8025044 (-) True G182977
TU247776 other downstream 485330 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 1218314 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 1219993 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 1221670 7029974 ~ 7030046 (-) True trnak-uuu_19
TU247995 other upstream 443041 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 788826 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 1758856 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 2161173 10501920 ~ 10610625 (-) False LOC120546776
TU248535 other upstream 2179970 10520717 ~ 10521410 (-) True G183528

Expression Profile