RNA id: XR_005636939.1


Basic Information

Item Value
RNA id XR_005636939.1
length 4115
lncRNA type inter_gene
GC content 0.38
exon number 4
gene id LOC120546796
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7349782 ~ 7386287 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

CCCAGAGGAACAGACAGTTTGGCATGAATTCAGTTATTTCCAAACAAAACCTCACGTTATTTTATGCTATACATGTTCAATAAAGACTAATGtattaaatatgtattcattataattatatttatagttattTAAGAGATGATTAAGatattttgatacttaagtaataGCTTACAACAGGCCATAGTATGTTGTGATAAAGGCACAACATATAGCAGGGCAGATAatgttagcctagcacagacTTTTTGCACAGActatttcttttacataaaGCTAATGAAAaggcacacaataacaaaaactaaCTTAACAATCGAGACAGAACTAGACAAGCAACTAACTACTGGCGGCAGTGGTAGAAGAGCAACTCCTGTTTTCTGCTAGATTAAAATTGCTGTGTTTATCAATGAAGAAGGCTTTTAAGAGAGCATAGACAACAACTTCAATTCCTTTtagtaaagggctgtctgatggCAAAATAAAGCGGcgaaaaaattctaaatatatacagtatatagatacTTCGCCAACCAACTCTGtttcatggcagtgtgtgtgcagatgaacagcTTTTGTCCGTTGCACCAGCTATCagtttgtgtaatgttgtaTCTCAAACTTGGAGTGATACTTGTTGTTCAAAGGAATTCTAATTATAGCTTTTGTATGTGGTTGTTATTATATCACTGTTATGAACCAGAACAAATCAGTTTGCTTGATTTGAGCAACCTTTTTATATTATGGTTTTGATAGTTTAGTTATGCCATCTCATTGCTGGACTACCATACCTGATATTCAAGCTCATTTGAAGGTTTGGTGCAGTTCAGCTTTATTGCTTGCCATCCATTCTCCCTTTTTTCCCCACCATGGATACTTCTGATGTTGCTTCAGATCTGCATCTTATCCCTACATTTCATTTACATATAGATAATATAGTATAAGCTAACAATGATGAATACATTGTTACTTTTGTAATTAACTTTAAAAAAGCTGTAAGGCCTAAAGAGAACTATGAATACAATTCTGAAAACTTTAAGCTCATGTATTAATAACAATACTCCAAACCATATAATTTCTATGGTTCAGACTGcttaaagctgcttacacataaAAGCCGGCAAAATCGCTCTGCGCGGGCCAATCCATTGAGAGCAGTGCCGCCCAACTAGGCACTGCGCTACCCCTGGCATCATGCACCTCTCAGAATTGCCGAATTGCTCGCTTGCTCTcagcacaattacatttttttcactcaAATTCTAAATCAAACAGGACATCTTAAAGGCCCCTTTCAgtgtattttgacatatttatggtatttcatattttttgagtCATTTTCATGACAATTTTGAGTAACAAGTGAGAGGCAGTTTCTGTGTTGTTCTAATAATTGTCTCATTTGTGGTCTGATAAACACTGACTTTATCAAATTGGAAGTTTCTAATATATTATAGAAGAGTTTAGACCAAAGATTGGCGACGAGACACAACTGTTTTAGAACATTGCAGTTTCAGCAGTCTAAACTggctcatctcagctggacacaAACCGGCTAATGGTgttgctgcgactcagctggtcaagtctccagaggctggttttaaaaCGTTAGAGACGTCTTCTGTTTCAACAGAAGTCAGCTGGTTGAGTGAGCttacaaactatagaaataaaatgatccataatgcatttatttctgttacaaactCTCAGCTGGTGGAAATGGCAGTTTTAGACAGTGGCTCAACGAGCGCTGCAACCAGGGTTTGTGGTGGAGCGAGTTAGAGAGAGATTGAAGAGAGGGAGCTGCGTTAGAACAAAGTTGAGAATCAGAGAACtacaatatatgaaatatattttgatgaatgttatgaacatgtaagataaaaatatgtatatttattattaattaattttgtatTGATGGGGAgaaaaatttattaatttagtaTAAAAACAACCCAATAATAATGAAGAAATTAATTTCAAATAATGCCAAATATTTGTCTGCTTATATGCTAAAAACTTTCAGTGTTTGTAGCGTATGGTTTAAATTGTAGTCTTAAATTGAGCTAATGTTaccacatttaaaagaaaacactgttacacacaatctgtcatgttcaagtccccatccTGACCACGCCCACCCCCCACTCTGGCCATGCCTTTACCATGTGGCAAACATGAGGTGTGTTTGCCTGCGTGTCCAGGCCCTCCCCTTACATTAGGTGAGTTTGGCGTGGTGTGAACTCAAATATCAACTGAACGGATAAGAGCACGCTGACATGCACAAGCATCTATACCAGGGGTGGCCAACCAGTTCAGAATAAAGAGCCACAATAAAACACGCACCAGCAGCAAAAAGCCACACAACACATGCAGGTCCACATTACAACAGCAACCATGACTTCCATATCTAATGAAAGTCATAATACATAGcagttttcatagttttttttttcttacttagaTGGACTCAGTGGGAAACCTGACAGTCTTTGTTACCCACAATCCTTTTTAGGTCTGATTGTACTCGGTTGTGGCCACTCTTTCACTCATTTGTCACTAGAGGGGCTTTCAAACAATCTGACTCAGCAGTGAAAGGGTTAATATTGAGGAAGGTGATCTGGGGCTGCTTTGTTTTCCTCAGGCTGCAGAATCTGTCCATAAAAAAACTCTGCtgcgttattttttattttaaaataattgtcaGATGCATTcaagtgcttttttttaaccaatctgaaatgtttcaaaaagtttaaaaaaaaaaaaaatccaccaatAACACAGCCACACAGTAAGAGCCTCAAAGGAGAAGGCACAGAGCCGCATACGGCTCAAGAGCCACAGGTTCGCCACCCCTGATCTATACAGATATTTTGATGAATGTTATGAACATGTaagataaaaatatttattataattattattaatttttcctAATGAGGAAAAATGTATCCATTTAGTATGTACACTTGTCATTGGCTtaattttgaggaaaaaaactaactaataataaattaaaaattaaaaaataattatttttatttcaagttaAGCCAAAAGCATTCGTCTGCTTATATGCTGAAAGGTTTCAGGGTTCGTTTGGTTTCGATCGTTTTCTCAAATTGAGCTACTGACGCcgtttaaaagaaaacactgttacacacgtatgtcatgttcaagtccccatccCGACCACGCCCATCCCCCACTCTGGCCATGTGGCCAGTGTGTATACCGGAGTCCCCATGGtgtccagcccctcccctcacGTAAGCTGTGAACTCTGCGTCAGATCTTCACTGCATGGACGAGAGCAGGCTGGAGTCATGGATCAGGGAGAGATGGAAGAAGATTTGACAACCATTCATGGTCACCGTGACAGCCCTTTAAATTCTTCAGGAAATGGACCAGAGCTCTTCTGACTCTACAGTGATCCTTGAACTAAGTTCCGTCCCTGAAAAGGAGGACATAAGTGTTCCTGAACTCAAGAGAGCAGAAAGTGTATTTGTTCATCAACAATGGCGAGAAAGAAGTGGAGCACCGAGGAGGTCCAGGCTGTGGAGAGCAATCTCATGGACAACATCAACTCTGGCAGGGTTCCTGGTAAAGCCCAGTGTGAAGCATCTATCAAGGGATCCTCAGAGGTGCTTAGGGGAAGGAGCTGGCAGGCAGTTAAGTTCTATGTGAAGAACCGCATTGATACTTTAAAGCGTCTAGAAAATAACCAATGGAAATCTAAATTGTAATCACTGAACATAATTCTTTTTTGCCATCTAAGTACTTCTACAATCCCACAACTAGGTACAGCGCTTACTTGAATTCAGCTCATATCTGAGCATGCAACGACATTTTATTAAGATTGTTAAAGctcttttgttttcaaatttaataTGTCAACATGCTCTGACTATTATTTCATTGAGTgatgtcatttacatttttatcctAAAGAACATTGTGGTAGTCGGTCATGGGTGGTTGGAGAAatggaggtagagagagacacaggttgtagagagagtgaaaggtttgtagagagagacaggtttgcagggagagagagacaggtatgtaggaaatgagagagacaggtatgt

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247732 lncRNA downstream 17013 7351008 ~ 7357827 (-) False G182916
TU247731 lncRNA downstream 20206 7351008 ~ 7354634 (-) True G182916
TU247716 lncRNA downstream 30163 7343144 ~ 7344677 (-) True G182913
XR_005636943.1 lncRNA downstream 43305 7328374 ~ 7331535 (-) False LOC120546799
XR_005636942.1 lncRNA downstream 43305 7328378 ~ 7331535 (-) True LOC120546799
TU247784 lncRNA upstream 450306 7836593 ~ 7836797 (-) True G182957
TU247785 lncRNA upstream 451235 7837522 ~ 7837735 (-) True G182958
TU247789 lncRNA upstream 466697 7852984 ~ 7853601 (-) True G182962
TU247814 lncRNA upstream 654336 8040623 ~ 8041804 (-) True G182980
TU247823 lncRNA upstream 661213 8047500 ~ 8047938 (-) True G182983
XM_039781984.1 mRNA downstream 574047 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 910038 6462940 ~ 6464802 (-) True LOC120546794
XM_039781988.1 mRNA downstream 1117705 6232742 ~ 6257135 (-) False cgrrf1
XM_039782002.1 mRNA upstream 58574 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA upstream 58574 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA upstream 58574 7444861 ~ 7588065 (-) True cnih3
XM_039780984.1 mRNA upstream 663171 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 663171 8049458 ~ 8126664 (-) True opn5
unassigned_transcript_1032 other downstream 341438 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 343117 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 344794 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1029 other downstream 347626 7027142 ~ 7027214 (-) True trnak-uuu_18
TU247550 other downstream 673723 6700491 ~ 6701117 (-) True G182764
TU247776 other upstream 375278 7761565 ~ 7766386 (-) True G182952
TU247804 other upstream 638428 8024715 ~ 8025044 (-) True G182977
TU247995 other upstream 1397501 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1743286 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2713316 10099603 ~ 10101061 (-) False LOC120546281

Expression Profile