RNA id: TU247789


Basic Information

Item Value
RNA id TU247789
length 618
lncRNA type inter_gene
GC content 0.43
exon number 1
gene id G182962
representative True

Chromosome Information

Item Value
chromosome id NC_053129.1
NCBI id CM020926.1
chromosome length 36987114
location 7852984 ~ 7853601 (-)
genome version GENO_Pfluv_1.0_2020_eurasian_perch_Genome
species eurasian perch
(Perca fluviatilis)

Sequence

gccagatttgtgcagtatacgactgattgttgtcctatggacagagtctcccacctcagctgtagatttctgcagttcatccagagtgatcatgggcctcttggctgcatctctgatcagtcttctcattgtatgagctgaaagtttagagggacggccgggtcttcgtagatttgtagtggtctgatactccttccatttcaatattatcgcttgcacagtgctccttgggatgtttaaagcttggaaaatctttttgtatccaaatccggctttaaacttctccacaacagtatctcggacctgcctggtgtgttccttgttcttcatgatgctctctgcgctttacacggacctctgagactatcacagagcaggtgcatttatacggagacttgattacacacagctggattctatttatcatcattagtcatttaggtcaacattggatcattcagagatcctcactgaacttctggagagagtttgctgcactgaaagtaaaggggctgaataactttgcacgcccactttttcagttttttatttgttaaaaaagtttgaaatagccaatgaatttcgttccacttcataattgggacccacttgttgttg

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU247785 lncRNA downstream 15249 7837522 ~ 7837735 (-) True G182958
TU247784 lncRNA downstream 16187 7836593 ~ 7836797 (-) True G182957
XR_005636939.1 lncRNA downstream 466697 7374840 ~ 7386287 (-) True LOC120546796
TU247729 lncRNA downstream 476830 7349782 ~ 7376154 (-) False LOC120546796
TU247814 lncRNA upstream 187022 8040623 ~ 8041804 (-) True G182980
TU247823 lncRNA upstream 193899 8047500 ~ 8047938 (-) True G182983
TU247822 lncRNA upstream 195977 8049578 ~ 8049985 (-) False opn5
TU247850 lncRNA upstream 337577 8191178 ~ 8191474 (-) True G183006
TU247857 lncRNA upstream 391964 8245565 ~ 8245765 (-) True G183013
XM_039782002.1 mRNA downstream 264919 7444861 ~ 7588065 (-) False cnih3
XM_039782001.1 mRNA downstream 264919 7444861 ~ 7588065 (-) False cnih3
XM_039782000.1 mRNA downstream 264919 7444861 ~ 7588065 (-) True cnih3
XM_039781984.1 mRNA downstream 1052191 6762711 ~ 6800793 (-) True meis2b
XM_039781999.1 mRNA downstream 1388182 6462940 ~ 6464802 (-) True LOC120546794
XM_039780984.1 mRNA upstream 195857 8049458 ~ 8126664 (-) False opn5
XM_039780983.1 mRNA upstream 195857 8049458 ~ 8126664 (-) True opn5
XM_039781890.1 mRNA upstream 398115 8251716 ~ 8340747 (-) True LOC120546734
XM_039781889.1 mRNA upstream 398115 8251716 ~ 8340744 (-) False LOC120546734
XM_039781892.1 mRNA upstream 398115 8251716 ~ 8306809 (-) False LOC120546734
TU247776 other downstream 86598 7761565 ~ 7766386 (-) True G182952
unassigned_transcript_1032 other downstream 819582 7033330 ~ 7033402 (-) True trnak-uuu_21
unassigned_transcript_1031 other downstream 821261 7031647 ~ 7031723 (-) True trnak-uuu_20
unassigned_transcript_1030 other downstream 822938 7029974 ~ 7030046 (-) True trnak-uuu_19
unassigned_transcript_1029 other downstream 825770 7027142 ~ 7027214 (-) True trnak-uuu_18
TU247804 other upstream 171114 8024715 ~ 8025044 (-) True G182977
TU247995 other upstream 930187 8783788 ~ 8787217 (-) False LOC120546397
TU248116 other upstream 1275972 9129573 ~ 9133472 (-) True G183176
TU248390 other upstream 2246002 10099603 ~ 10101061 (-) False LOC120546281
XR_005636937.1 other upstream 2648319 10501920 ~ 10610625 (-) False LOC120546776

Expression Profile