RNA id: TU17872


Basic Information

Item Value
RNA id TU17872
length 290
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G15980
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 5571923 ~ 5572212 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GCATTGATGTTTTGGGGCTGTCGCTGGGCAACACGGATTTTCAACTCCCTCCAAAGATTTTCTATGGGGTTGAGATCTGGAGACTGGCTAGGCCACTCCAGGACCTTGAAATGCTTCTTACGAAGCCACTCCTTCGTTGCCCGGGCGGTGTGTTTGGGATCATTGTCATGCTGAAAGACCCAGCCACGTTTCATCTTCAATGCCCTTGCTGATGGAAGGAGGTTTTCACTCAAAATCTCACGATACATGGCCCCATTCATTCTTTCCTTTACACGGATCAGTCGTCCTGG

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU17854 lncRNA upstream 69949 5501780 ~ 5501974 (+) True G15968
TU17855 lncRNA upstream 69949 5501432 ~ 5501974 (+) True G15968
TU17852 lncRNA upstream 99546 5472040 ~ 5472377 (+) True G15966
TU17850 lncRNA upstream 101674 5470040 ~ 5470249 (+) True G15964
TU17848 lncRNA upstream 109330 5462386 ~ 5462593 (+) True G15962
TU17870 lncRNA downstream 5198 5577410 ~ 5578032 (+) True G15978
TU17877 lncRNA downstream 26626 5598838 ~ 5599260 (+) True G15983
TU17879 lncRNA downstream 28011 5600223 ~ 5600503 (+) True G15984
TU17880 lncRNA downstream 28944 5601156 ~ 5601440 (+) True G15985
TU17885 lncRNA downstream 34307 5606519 ~ 5612278 (+) True G15989
CI01000001_05565644_05568075.mRNA mRNA upstream 3435 5565644 ~ 5568488 (+) True CI01000001_05565644_05568075
CI01000001_05498507_05500723.mRNA mRNA upstream 70807 5498210 ~ 5501116 (+) False CI01000001_05498507_05500723
CI01000001_05487409_05494726.mRNA mRNA upstream 76587 5487302 ~ 5495336 (+) True CI01000001_05487409_05494726
CI01000001_05478200_05480124.mRNA mRNA upstream 91419 5478200 ~ 5480504 (+) True CI01000001_05478200_05480124
CI01000001_05427300_05427801.mRNA mRNA upstream 144105 5427232 ~ 5427818 (+) True CI01000001_05427300_05427801
CI01000001_05579315_05580553.mRNA mRNA downstream 7103 5579315 ~ 5580703 (+) True CI01000001_05579315_05580553
CI01000001_05581818_05584137.mRNA mRNA downstream 9606 5581818 ~ 5584621 (+) True CI01000001_05581818_05584137
CI01000001_05587090_05591952.mRNA mRNA downstream 14878 5587090 ~ 5592138 (+) True CI01000001_05587090_05591952
CI01000001_05689002_05702184.mRNA mRNA downstream 116443 5688655 ~ 5702684 (+) False CI01000001_05689002_05702184
CI01000001_05734513_05735964.mRNA mRNA downstream 160909 5733121 ~ 5736013 (+) True CI01000001_05734513_05735964
TU17699 other upstream 281967 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 507219 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 507994 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 1950472 3616248 ~ 3616411 (+) True G14846
TU15116 other upstream 3900919 1668020 ~ 1671004 (+) True CI01000001_01668334_01670035
TU17891 other downstream 139673 5711885 ~ 5714951 (+) True G15995
TU19033 other downstream 1960360 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1960428 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1960552 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 2459912 8032124 ~ 8032483 (+) True G17234

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
eurasian perch (Perca fluviatilis) TU247814 True 1182 lncRNA 0.48 1 NC_053129.1 8040623 ~ 8041804 (-)