RNA id: TU19034


Basic Information

Item Value
RNA id TU19034
length 1215
RNA type TUCP
GC content 0.33
exon number 4
gene id CI01000001_07531945_07539781
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7531541 ~ 7540586 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGGGAGTTGAGGCTTGTGGTCAGCGCCAGTAACTGTTTCTCATCCAACTGACCAGTGAAAGACGAAAACAGCATACTGTCGACTGTATGGATATTGGGACAGACTGAACTGACAATTATTCAACACCCAGTTTCTGCACTGGATGATCCCTTTCTGGAAGATCCCTGACCTCACCACGGCTTATCGGCTGTCTTCTAATGACACCGACCCCAGAGACAAAAGAAGCGTATCCAGATGTCCTGGAGACGATGAGAGACCTGGAGTCAGCAGTAAGGCGACCTCTCACCTACCGTCATCTCTTGGAAAGTGAAAGCAGAACAAAGGCTTATTCGGTAAGGGGAAATCTACCTCTGTCCCTGGCTGTCATACAAAAACTCTGGACATTCCATGAGCAGAGTATTAAAGTGTCCAGAGCTCACCTGCAGCAGACGGGAGAGTCATATACGAGGAGCCTTTACAGTCACCGACAGATGATGGCGAGAGATGCTGAAGTGATGGAAGGAGAGCGAGCGAGTGATGGAAGGGTGCTGCTGTGAGTGGTTCTTTGGCAGTGTCTTAGCTGGTTGTTGTGTGGAGTGAGAACGAAGCAATCAGCAAGTATACTGCCGCAGAAACTCGTCACCTTGGGAGGCCCATCTATCCGACCCCGCTCACGCACTCAGCTGCCCACCCGCACTTAGAGCCTGGAGAGAGAGACAAGAAAAGAGAACCTCAGTCTGTACATATTACCAAGCTTCTCTTCCCATTCGTTCTTCTAATTGTGAGTGTGAGCTTTTGTTTTTGTCACTGCCGCTTGAACACATACAGCGACTTATTTCATAAGCGCATTTCAAGTGAAAGACTGATTCATGCTTACAGTATCTTTGGTCATTTTTTTCCATGACGTTATTGTCATAGTTTAGATCAAATGATTTTTTTTTTTTTTTTTTTCATGAGATCAGGAGTTATTTAGTCAAGTGTTATTGTGAATATCAGCTGACCAGATTTCAGTATTGCCATTACATGGTGTGACCTGTTTATACTTGGACTATATGATGATAAATTCAGATGACATTGTGTTGTAATATGTTCATTATGAAGTTTGCTAATGGACTAAAATATACATTATCATCAATGATGAATGAAAATACCTGTCATTTTGGTTTGAAAAAATGTCTAGAATATTTTTTTGAAAATAAAAATATATAAATACACAAATATGTAGAATGTAAGTGT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19062 lncRNA upstream 24774 7507979 ~ 7507990 (+) True G16985
TU19074 lncRNA upstream 25883 7505945 ~ 7506881 (+) True G16997
TU19025 lncRNA upstream 40653 7461128 ~ 7492111 (+) True G16961
TU19055 lncRNA upstream 102697 7429190 ~ 7430067 (+) True G16978
TU19145 lncRNA upstream 209149 7323286 ~ 7323615 (+) True G17061
TU19205 lncRNA downstream 35052 7575512 ~ 7575845 (+) True G17116
TU19195 lncRNA downstream 57521 7597981 ~ 7696043 (+) True G17106
TU19227 lncRNA downstream 251744 7792204 ~ 7792612 (+) True G17137
TU19191 lncRNA downstream 333749 7874209 ~ 7906024 (+) True G17103
TU19268 lncRNA downstream 422317 7962777 ~ 7963902 (+) True G17177
CI01000001_07527533_07530601.mRNA mRNA upstream 1693 7527029 ~ 7531071 (+) True CI01000001_07527533_07530601
CI01000001_07421548_07447343.mRNA mRNA upstream 85259 7421548 ~ 7447505 (+) False CI01000001_07421548_07447343
CI01000001_07405859_07406484.mRNA mRNA upstream 126075 7405144 ~ 7406689 (+) True CI01000001_07405859_07406484
CI01000001_07330166_07335508.mRNA mRNA upstream 196728 7330166 ~ 7336036 (+) True CI01000001_07330166_07335508
CI01000001_07231558_07266828.mRNA mRNA upstream 265862 7231558 ~ 7266902 (+) True CI01000001_07231558_07266828
CI01000001_07544981_07548224.mRNA mRNA downstream 4450 7544910 ~ 7548706 (+) True CI01000001_07544981_07548224
CI01000001_07558102_07564471.mRNA mRNA downstream 16465 7556925 ~ 7564666 (+) True CI01000001_07558102_07564471
CI01000001_07577777_07584809.mRNA mRNA downstream 37265 7577725 ~ 7584809 (+) True CI01000001_07577777_07584809
CI01000001_07678904_07760870.mRNA mRNA downstream 138444 7678904 ~ 7760870 (+) True CI01000001_07678904_07760870
CI01000001_07811962_07871073.mRNA mRNA downstream 271502 7811962 ~ 7871073 (+) True CI01000001_07811962_07871073
TU17891 other upstream 1817813 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 2242808 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 2468060 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 2468835 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3911313 3616248 ~ 3616411 (+) True G14846
TU19348 other downstream 491664 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 1675562 9216022 ~ 9228859 (+) True G17353
TU19479 other downstream 1694003 9234463 ~ 9240677 (+) True G17354
TU19459 other downstream 1877868 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 2699440 10239900 ~ 10241492 (+) True G18896

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043002 False 794 lncRNA 0.46 4 NC_007134.7 22576224 ~ 22591370 (+)
grasscarp (Ctenopharyngodon idella) TU183209 True 838 lncRNA 0.37 4 CI01000030 6114451 ~ 6118974 (-)
rainbow trout (Oncorhynchus mykiss) TU954764 True 1047 lncRNA 0.43 2 NC_048573.1 72503324 ~ 72504460 (-)
tiger barb (Puntius tetrazona) TU183209 True 1342 lncRNA 0.39 3 NC_056716.1 3159424 ~ 3196123 (+)
tiger barb (Puntius tetrazona) TU233004 True 1160 lncRNA 0.41 1 NC_056721.1 13105761 ~ 13106920 (-)
mexican tetra (Astyanax mexicanus) TU183209 True 1129 lncRNA 0.48 5 NC_035911.1 27627415 ~ 27649689 (+)