CI01000001_07811962_07871073 (SAMD11)


Basic Information

Item Value
gene id CI01000001_07811962_07871073
gene name SAMD11
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7811962 ~ 7871073 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07811962_07871073.mRNA
ATGCCTGCCATCAAAAAGGAGAGACTGGATGGAGAAGACATGGCATTAGCCGCCTTCAACCAGCCTGAATACCTGGCCCCTTTAAATGCCACCGCTATCCCCGTGGTGACCCCTCATCCGCCGCCGTACGATCACATTTTCGCCCATCATCAGCGCGCGTACTTGGGCTTTCGCGATACCGCGCTGCATCAGCAGCACCTTCACCACCACCCGGACGACTTCATGCTGGAGAGCTTCTCGTCTATCCCGGACTTTCAGCCGTTTTTCGACAACGGGGAGCCTTGTATCGAAGTGGAATGCGGGGAAAACAAAGCACTACTGTACATTAACAAACTGTGCCAGGGCAGCAAAGGGCCCTCCATCAAATACCGGGCTGAGTGGCTCACCCCAAACGAGTTCCAGTTCGTGAGTGGAAGGGAGACAGCCAAAGACTGGAAACGGAGTATTAGGCACAAAGGGAAAAGTCTGAAGACACTTATGTCCAAAGGAATCTTACAGGTACATCCTCCAATCTGTGACTGCCCTGGCTGTAGAATTTCATCTCCTGTGAACCGTGGGCGACTGGCAGAGAAACGCACCATCCCCTTGCCGCCAACACGGGTGCCCAAAAAGGAGCTGGCCTCCGTTTTCAGCAGTGACGACAGCGAGGGCAGCGAGCGGGCCAGTGGAGATCATGCAGACATCAAACAAGAAGAGCTGCATTACACTATCATGAGAAAGAGTCGTGACAGTGACCTCTCAACGATCATCTCCAACCTGCACCACACCCGACAGCACGGCATGCCCGAGGGCCAGCCCTGCTCTGACCTCAGCCTCGCCTCCGCACACTCAGATGACATTCTAGGCAAGAGGAGAGCCTACTCCCCCAACAGCAGCAGCGAGTGCCCATCTGACAGCAAGAAGTCCCGCAGTGTGTCACCTAAAGAGAACTCTCACACGCCTGCGCTGGAGCCGGGCAGTCACATGACCCCCGAGGAGCACTACAGGCGCATGATGTCAGCTCTGAACGAGCATGGCTCTTATGAGGAGCAGCAGCAGCGCCTGTACCAGCTGGCAAACAACATGGGCATCCCGAGCCACGAGCTGCTGCGTGTGCGTCAGGAAGCCATGGCTGCCGTTAGAAATCCGGGAGGAATGGAAGCCCACGTCCCCACTGCAGGCAGCTCCTCCAGCCAGCGGCGCAAACAGGGCCTTCCCCAGCACAGAGACGCACAGTTTCCTGAGCGAGACATATCGCACCCTCCTCCATTGCTGTCCCCGCAGAATGCTCCTCACATTGCTCTGGGGCCTCACCTGCGTCCCCCGTTCCTGGGCATGCCTTCTGCCCTCTGCCAAGCCCCAGGTTATGGTTTCCTGCAGCCTGCTCAGGCAGAGATGTTCGCCCGTCAACAAGAGATTCTTCGTAAACAGAACCTTGCTAGGTTGGAAATGTCTGCTGAGTTATTGAGACAGAAGGAGTTAGAGAGCCTCCACAGGCAGCGACTGCTGGCGGACCCATTGGGCCTGCATCCCGGGCTCCCTGCAGAACACCCTGCCTTGCGCAGCCTGCAAGAAATCCCAGAGGGCCACCCACTCCGAGAAGAGCTCAATCGCCGCAACGCCATGCTGGTTTTGCGGCACAACAACACCCCATTACTCTCCCTCAACCACCAGGGGGCAGCAGCAGGCACTTCCTCTAAAGACCTCAGCAACAGGAAGAGCTTGAGGAAAGGAGGACACCTCAGAGGGGACCAACAAGGGGGTTCGTCTGAGACTAAAGAGATGCTCAGTGAGGGTTCTGGTCGGGATGGAGAAACAGAGGGACAGGATGAAGACATGAAAGACTCAGAGATTGATGCAGAGGTTGGGGAAGACAGGCCTGAGAGGCTTTCCAAAGCGGACGGACATGGTCTCGGTTCGGAGGTGTGCCAAGGCAAGGATGTGACCAAGTCTAGTGAAACAGTGAAAGAGCTGGGGGAGGGGTCAGGAAGGCTCAGTGCCCCTTGTAGCTCCATTGGCCAAGAGTCACCGACCCACCACCTCTTCACATCAGGACTGAGCAAGAGTGAGGCCAAATACCTGCCACCAGGAATCCCACCCTTACCCACTTTGCCTGGACAAACGCTGCCCTTTACCTTTCCATACACCAGCCCTTACTTTCACACCGGCGCCATGGGAGGTCTTTTCGTGGACGGAGAAGAGGCGGGAGCAGCCGAGGACATCAGCAAGTGGAGTGTGGAGGAGGTGTGCAGCTTCATCAACAGCCTAGCAGGCTGTGGGGAGTACACACAGGTCTTCAGAGAGCAGGCCATTGATGGCGAGACTCTGCCACTGCTAACTGAGGACCACTTGCTCAACAACATGGGACTGAAACTGGGTCCTGCCCTCAAGATTCGCTCTCAGGTGGCGCGACGTATTGGCAGAATATTCTACATGACCAGCTTCCCGCTGGCCCTCCCGCTGCCGCCATCTGTTCTGCGCCCCACAGACAGAGACCCCCTGCCCACCGAGACCCGTCCTCCTTCTACCGGCAGCACTTCCTCTCCATTCAGCGTGCCCCCTCCCGCCTGCCGCGCCTCCCCCAAACAGGAGAACGGAAACCCCTCCTCAGCGGGAGCCTACGACTCCACTAAACCTCCCTCG

Function

symbol description
samd11 Predicted to enable chromatin binding activity and histone binding activity. Predicted to be involved in negative regulation of transcription, DNA-templated. Predicted to act upstream of or within positive regulation of transcription by RNA polymerase II. Predicted to be located in cytoplasm. Predicted to be active in nucleus. Orthologous to human SAMD11 (sterile alpha motif domain containing 11).

GO:

id name namespace
GO:0005634 nucleus cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07811962_07871073.mRNA True 2622 mRNA 0.57 13 7811962 7871073

Neighbor

gene id symbol gene type direction distance location
CI01000001_07678904_07760870 RERE, REREA coding upstream 51092 7678904 ~ 7760870 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding upstream 227153 7577725 ~ 7584809 (+)
CI01000001_07558102_07564471 SLC2A5 coding upstream 247296 7556925 ~ 7564666 (+)
CI01000001_07544981_07548224 GPR157 coding upstream 263256 7544910 ~ 7548706 (+)
CI01000001_07531945_07539781 NA coding upstream 271397 7531541 ~ 7540586 (+)
CI01000001_07908382_07926320 KLHL17 coding downstream 37309 7908382 ~ 7926477 (+)
CI01000001_07935720_07951221 PLEKHN1 coding downstream 64647 7935720 ~ 7951909 (+)
CI01000001_08091363_08093148 AGRN coding downstream 218849 8089922 ~ 8093262 (+)
CI01000001_08113500_08119591 NA coding downstream 242091 8113164 ~ 8119707 (+)
CI01000001_08174175_08184832 NA coding downstream 302210 8173283 ~ 8185874 (+)
G17137 NA non-coding upstream 19350 7792204 ~ 7792612 (+)
G17106 NA non-coding upstream 115919 7597981 ~ 7696043 (+)
G17116 NA non-coding upstream 236117 7575512 ~ 7575845 (+)
CI01000001_07421548_07447343 RAP1GAP non-coding upstream 303972 7421548 ~ 7447505 (+)
G16997 NA non-coding upstream 305081 7505945 ~ 7506881 (+)
G17103 NA non-coding downstream 3136 7874209 ~ 7906024 (+)
G17177 NA non-coding downstream 91704 7962777 ~ 7963902 (+)
G17233 NA non-coding downstream 157161 8028234 ~ 8030550 (+)
G17236 NA non-coding downstream 163906 8034979 ~ 8035184 (+)
G17216 NA non-coding downstream 167171 8038244 ~ 8038643 (+)
G15995 NA other upstream 2097011 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2522006 5279837 ~ 5287698 (+)
G15794 NA other upstream 2747258 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 4190511 3618075 ~ 3621451 (+)
G17234 NA other downstream 161051 8032124 ~ 8032483 (+)
G17353 NA other downstream 1344949 9216022 ~ 9228859 (+)
G17354 NA other downstream 1363390 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1547255 9435836 ~ 9436373 (+)
G18896 NA other downstream 2368827 10239900 ~ 10241492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002297 samd11 coding CM030136.1 CM030136.1 10667692 ~ 10670647 (+)