G17103


Basic Information

Item Value
gene id G17103
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7874209 ~ 7906024 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19191
ATTTAGAGGCTTTATTAACCGCAGACCTTATTTCAGGCGATTTAGCAAAAACCCATTCAAAAAACCCATTGACTTCGGGGCGATGGAACCGGAAGTCCTAAAATGCTAACTCGGTTCCGGGTTTTGCCTACAAAAACACGTCATCCCTGAGGTACTCTATTACCCCCACAAAACCCACCGCACACTTTAGGGGCTCTGTTGATGAGCTATGAGCTCAAAGGAGGCACGAGAGACACAGACTCCCACTGTAACTTTACCTGCGGGTTTCGCTATTGGACACTGTTCCTTTAAAAAAACGAGTAACGTACAATTTTTTCATTGTCACATTTTGTAATATTTTATTTTTGTAATATGGATTATTTTCTAATCCTAATTTTTTGAGGAGGCACTGCCTCACTTGCCTCCTCAGAGGAAACGCTCCTAGCGATATTTAACCCGTCCGTTATTGCTGTGGAAAGAATCGCGCTTTTGTGGTTATTCACGGTTTGTTGAAAGTACGTTGTTGATGCTTTTACACTTTTAAATGTCCTTTTAATGTTCAGTGTTTGAAGGGTGAGTAGAATAATGTCATCTCATTTTGCCAAGTTTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAATTATTGCATTCATAGAGCCAGCCTTTCACTGATTGTTTACAGCTTAGCAGAAGTTACTCTCATAATTCCCGCAAAGCGTCATGGGGCGTAGGAATAGGGTGGATATTCTTCTTCTATCATCACACATTGGGTTTGAGACAGACTAAAACTAGTCATCAGTGAATAATCTTCCTCTCCAGACTGAATTGTTTAAAGCTGCTACTAGATGATAGTTAACTGAACTCAAGAACCAGATCAGGCCAATTCCTAAACTCACTCACAAACTGGATAAAACAGCTCTTTGAATTGCACTTGCAAAAGAATGATTTAGCAAATAAGTTAAATAAGAATGGTTGTAATTTTTTTGGGTTGCACTATTCTAATAGTTAACTTTTTTTAACCAATTTCCTACAGCACTACTAGAGCTGCGTAGAGTTCTGACAGCTTAAACGCTGCTTTAAAACATTTAGAAAAAGCCAAACGATTTCAGAAAGTGATGTGAAAGCACTGAAGGGGAGAGATGTTTTGGCGAGAGAACAGGCTGCTCTCTGTTTTCTTCTCTTCCTCTCTCCCCACCTGGGCAGCACAGCCTGGCAGTGGATGATACGAGCGTTTGGCAGCCTGGTGCTCAGGGCTGACCTCGTGCCTCCACCTCCGCCTCTGGTTTACCCATTCGCCACCTCTAAACACGAGCAGTGCCTTCGGCACAACAATGCAGCATCTCTAAACACAGATGTGAAAGAGACAGCTTTATGTGGTTTTAAAACAAAGTTCAGGTCATCTTTAATTTGACAACATTATAAAGCATTAGATGAAAAAGAAGAGTCCATTTGTTTTGTTTCACACTTTATAAAATACAATGGTGCAAATGTACATGGCTCTTAAAGGAACAGTTCATCCTTAAAAGTTCATGTCTTGGTGAGCTGTTCATTTAATAACAGTATCAATCATGTTTGGATGTGAAATAGAAATGTCCCTCTGATGTAACACTGTATTTTTAGTCCTGATCAGAGAGCTCTAGGTCCTCAACCATATCTTCATCTCCCTGAGCAACCTCCTTCAGCTCTGTGCTCAACATCTTCTTTGGTGCTTTGCCTTTAGAAGACGAAGGCTTTTTCTGGTCGCCATCAGAATCATCCTCCTCCAAGTCATCTACATCCTCTTCATCGCTCAGGTCTGAGAGGTCCTCTAGGCCTTCATCAACCTCATCAGAGTCACCTTGTTCATCTTTGGATTGGAACAGGTCGTCATTATCGTCACTATCTGAATCAAAAAGACCCTTGAACTCCTTTTTGTCTTCTTTTTTCTCTTCAGCCTTCTTGCGCTTGATTTCAGGGAGATTCAAATCCTCCATCCTTTCTTTTCCAGAGATCTCTAACTGAATCTCCTTTTCGCGAAGTTTCTTCCACTGGCTGTAATATTTAGTGATAGGGGTGCCTTCCTCTGCCACTTGCTTCTCCCAGGCCGCCACAGCTGTGAGATCAGCCACGCCAAACGCAGCTTTCTGCCTTCGTGCTGTGATGTAGCTGCAGTTCTCCTGTATCTTCTCCAACAGCTGCCGCATCTGCTTGCAGTAATTGGCCACTTTGCATTCCTTCAAGAATGCTTTCAGCTGAACGATGGTGGGCAGAGCCAGCTCAGGAAAGCCAATGGCGCAGGCCTGAGTGTGGAAGTACTCCAAAATGAGGTCATACAACTGCTCCACTAGACCATCCTTATAAGCCTTCTCTTGGAGATTGGTCTTGCTGAGTTTGAGGATCACTGCAAAATTGATGGGCTTTACACTCATGCGGCCTGGTTTCTTATTGAAGTCTTCCTGCTGGAGGATCTCCAGCAGATAGGGCAAGACAGGCACAAATGTCTTGGTGTTGCCAGACAACAGGATCATCGCTCTGATGCAATGCAGTCGCAGAGGGTAATACCGGGAGATGGGCACAAGCTTGATGCAGCCGGAGATGACTTGGCACAGTGGGTAGATCAATGGCTCCAAAACCTCACTGGGGTAGATGGTGCTTAACACACGACACCACAGATACAGACAGTGCACATACTGCCAGTTATACACAGATTGAAAAGTCTCCTTCTTCTTCAAATTTATGGCATTCCTGAGGTGGATGGCTAGCTGACGGATGTAAATAAAGGCATGCTGGTAGGACACCTGTGTGTCCAGTGAGTACATCTCAGAGAGAGTCCGTTGCATGAAATTAATCATTGGAAGAGTGGTGGGTGACGTGAACTTGCAGTTCTGTACGTAGGCGATGTACAATTGCTTGAGAACAGTGTTTAGGTGGATTTCCTGTTTGTGCCGGCAGATTTTGTTTAGAGCTAGAAAGGCCAGGACCCTCACAGTCTCCTCTCCTGTGCTCCAATGTTTGATCAGGCTTTTGAGAAAGAGCCTGCACTGTTTTGGCAGACACAGGTAGTACGGCACCATCTGGATGGCATGACGGAGAACTGCAGATATGACCGTGGCCTGGGTTAAACTGGAGAGTAGCTTAACAAGACCAGCAACATACATCTTAATATCAATCTGATTTTTCTGCCACCTAGGACTTGAGGATGGGAGTATTAGTTTCTTCTGGTCTTTATCTGGAGCTTTGAGCTTCAGCATTTTGTTCAGAGCTGCATGCATGTCCTTTATGCAGAACAGAACGAGGGAATTAAACACCGAGCTGTCTGAGATAGTATATCGACACAGCTCATCAGATTCGCCCTTCGTTGTAGCCACAGCAGCCTTGAAGGCTTGTGTGATGTCCCTAATCAAATTTGCCGTGGGCTCTTTCCTGAGTCCAGTTCTCCAGTTCTCAATCATTGCTTCTGTGACCCTGGTAGTTTGTTTAGATGATTTTAACTGTTTTGCATCCTTTTCTGATTCCTCCTCATCATCATCAGCTTCCTCCAGTTGAGAAGGGAGTTTGTGGTACATCCTTTCCTCTTCATCCCCATCCTCATTCTCGTCTTCAAAGTCAGAGTCAGAATCATCAAAATTCAGGAGCTTCTGGTCATTTTGTTCTAAGAATTTATAGAATTCTGGGTCTTTGCTCTTGAGCGCTGATAGCTGGCCCTTGTGCTCAGATGCCTTGCCCTTCTTTTTGACAGACGTCTTCTGAGGTGCAGGTTTCTTATTTTTTCCTTTCTGTTGTGCTGATTCCTCATCCTCACAATCATCTTCCTCATCAGAATCAAACCCAGATAACATGAACTCATCCACACTGAGATCCTCCAACTTCCTCTTGTTTTTCCCTGCCATGCTGGATAAGAAACGTGCACACAGGGACGCAATACCCACAATGCACCGCTTGCGAGAGCTCAGCTGAGTTGATCTTTTGTTTAACGTTGCGTTAAACGCAAAACAATACCGAAAACTCACTTTTTTTTTAACTAAATGACAGGACACTAGTCTACGTTTTTGCTTGCTTATGTTTTTGGTCGTATTATTATAAACAGATTATTTGCCTCTTCATAATAGGTGGTAGAATTAGGGTGGGATTTATTTTAGCCCAAATGCAGAATGTTTCCAGCCACGACTTTAACAGTCGCAAATACATAAAATAACCAAATATATGCAATCCACCGAGGTCTCCAACCACAGAGGCCGGTAGGCAAAGCACAATTACAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU19191 True 4218 lncRNA 0.43 19 7874209 7906024

Neighbor

gene id symbol gene type direction distance location
CI01000001_07811962_07871073 SAMD11 coding upstream 3136 7811962 ~ 7871073 (+)
CI01000001_07678904_07760870 RERE, REREA coding upstream 113339 7678904 ~ 7760870 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding upstream 289400 7577725 ~ 7584809 (+)
CI01000001_07558102_07564471 SLC2A5 coding upstream 309543 7556925 ~ 7564666 (+)
CI01000001_07544981_07548224 GPR157 coding upstream 325503 7544910 ~ 7548706 (+)
CI01000001_07908382_07926320 KLHL17 coding downstream 2358 7908382 ~ 7926477 (+)
CI01000001_07935720_07951221 PLEKHN1 coding downstream 29696 7935720 ~ 7951909 (+)
CI01000001_08091363_08093148 AGRN coding downstream 183898 8089922 ~ 8093262 (+)
CI01000001_08113500_08119591 NA coding downstream 207140 8113164 ~ 8119707 (+)
CI01000001_08174175_08184832 NA coding downstream 267259 8173283 ~ 8185874 (+)
G17137 NA non-coding upstream 81597 7792204 ~ 7792612 (+)
G17106 NA non-coding upstream 178166 7597981 ~ 7696043 (+)
G17116 NA non-coding upstream 298364 7575512 ~ 7575845 (+)
CI01000001_07421548_07447343 RAP1GAP non-coding upstream 366219 7421548 ~ 7447505 (+)
G17177 NA non-coding downstream 56753 7962777 ~ 7963902 (+)
G17233 NA non-coding downstream 122210 8028234 ~ 8030550 (+)
G17236 NA non-coding downstream 128955 8034979 ~ 8035184 (+)
G17216 NA non-coding downstream 132220 8038244 ~ 8038643 (+)
G17252 NA non-coding downstream 175488 8081512 ~ 8081742 (+)
CI01000001_07531945_07539781 NA other upstream 333623 7531541 ~ 7540586 (+)
G15995 NA other upstream 2159258 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2584253 5279837 ~ 5287698 (+)
G15794 NA other upstream 2809505 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 4252758 3618075 ~ 3621451 (+)
G17234 NA other downstream 126100 8032124 ~ 8032483 (+)
G17353 NA other downstream 1309998 9216022 ~ 9228859 (+)
G17354 NA other downstream 1328439 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1512304 9435836 ~ 9436373 (+)
G18896 NA other downstream 2333876 10239900 ~ 10241492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location