CI01000001_08091363_08093148 (AGRN)


Basic Information

Item Value
gene id CI01000001_08091363_08093148
gene name AGRN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8089922 ~ 8093262 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08091363_08093148.mRNA
GTATAAAAATTAAGGACCGGGACACAGTGCCATTAAAATGAGAGTATTTCTACAAATATATCAGTGCAACCACAGATTCCACACCCTGTCATTTTCCAGGAATAGATGGACGGGTAGTGAAATTACAGCTTTTGAAAGGGTGGAAATTTATGCACTGTCAGTTTAGAACTGGGAGCGACAGTAAGATTTTTATCAGTTGTGTGTGTCAGAATGATGTTCACATTAGCAACATCATTACTCATCTCTGTTTCAATATGTTAAGATGGAAGTTGTTACAATTATTTGTGTCAAGGTTAACTGTTTTTTACTTTTTTTTTTAAAAGATACTGTACTTTCCAGTGCATTTTGCAGTGTACATTTTGCAGTAAGTATCAAGTAATTTTAGTGAACAACTGAGACTGATTGTACAATTATAAACAGTCTCAGCAAATAATTACATATTAAGCTCATGTTGTAATAAATATTAAAATTAAATAAATGGTATGATATTTAAAGTAAATTTCTGTATATAGAATCTTAATATATTATTATTATTGTTGTTGTTTTATTTTTATCTTTTTACATTTTATATTTATAAATGAATTTAGCACACGCCATCTTACCTCAAATTTGAATTGTTAAGCCTCCGTATTTTAGAAAAATGTAAGTTGCTAACAGGTTTCTACGTAAGGACTACAACTACCACAAGAATGTGAGTTTACATCCTTGATGAATCGGTCTCCTGTTGTAGTCCCTATAGGATCTTATTAGCAATTTTTTTAAAGCGGCTGTAAAATACACTTTTAAAGTGTGATTAAGTAATTTATCTTGTTGACCAAAACGTGAAACTATCTTAAAATAATAATAAACTCATAATTTTCAGATTTGATTTTCTCATAAAACCACGTTCAAATCAAAACAATAGCTTGAAAATGCTACATTTTTTCGGGTTTTTTGGGACTACAAACGGAACATCTCTGTATATTCATATGAGAGTAAATGCAAAGATCACTTTTAGTTAAAAAAGCTTTCTGTTCACTCCATCTGAAATCCTGTGGAGCGGTTTATTTGTCCGAATTGGCGCAATCTCTCCAAGGGGTGGCGTTTTACACCGGTTTCTCTCTCTCGTGCGCTTGAAATCACCCCCTCCGTCGCTCTTATCAGCAATTCAGATTGCATGCAAATGCCCTGTGAAAGGAGCGTCATTCTGAAAGGAGAGCGAGTGTGCGCGCGAGGGGGGTGAGCAGCGGCATTCCTCGTTCCTCTCTCTATTCTTCTCTGTCTGCCGGCTGATGCTCGCGCGTTCACTCAGCGCAGATATGAGCGCAGATCGCTGTGAAGTTTAAAGAACACCGAGAGCAGCGCGCGGTCGTATTAGTATTTACATCAAACTTGCTGCAGAACTCGTCCGGCGTGGGCATTAAGAGTTCGGAACTTTCTCTTTTATCCGTTTGCTTTGACCATGGGCTCTTTCCGCAGAAAGGCGTTTTATTGGCCCGTTTGGTCATTTGCTGTTGTTTTTGTGATTTTGAGTCAGCGTTGTCATGGAAGTTGTTCAGAAAAGGAGCTGGAAAAAAGAGAAGAAGAGGCGAATATAGTTTTAACCGGGACTGTAGAGGAGATCTTGAACATGGATCCAGTGCACAACACTTATTCCTGTAAGGTCAGAGTATGGCGCTACCTGAAAGGCAAGACCATGGTGAACGGAGAGGTGCTGCTGGACGGAGGAAACAAGGTCATGATCGGTGGCTTCGGGGACCCCGATATTTGCGACAATCAGGTGGCCACCGGAGATACCCGCATTTTCTTTGTCAACCTGGCCCCTGAGTACATGTGGCCAAACCACAAGAACGAACTGATGCTCAACTCAAGCCTGATGAGGATTACTCTCCGCAACTTGGAGGAGGTAGAGCACTGCGTTGAAGGTAAAAACACTTTCCTGACTCAGCATAAAGCTGTAACTCATGTCTGCTGGCGGTATAGAGATTTGAGAGTTAGAAAGCTTCTGTGGTGGTGACGGCGCTCCTGATTGCAAAAGCAGGTGGTGTTTTCTGCTCTAACTGCATCTTCATTCAGCCTAATGAAGCGGTGCATGTGTTTTGACATTACATTAACCATTTACATTATATTA

Function

symbol description
agrn Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within anterior/posterior pattern specification and nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural tube; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 8. Orthologous to human AGRN (agrin).

GO:

id name namespace
GO:0007416 synapse assembly biological_process

KEGG:

id description
K06254 AGRN; agrin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08091363_08093148.mRNA True 2110 mRNA 0.40 2 8089922 8093262

Neighbor

gene id symbol gene type direction distance location
CI01000001_07935720_07951221 PLEKHN1 coding upstream 138013 7935720 ~ 7951909 (+)
CI01000001_07908382_07926320 KLHL17 coding upstream 163445 7908382 ~ 7926477 (+)
CI01000001_07811962_07871073 SAMD11 coding upstream 218849 7811962 ~ 7871073 (+)
CI01000001_07678904_07760870 RERE, REREA coding upstream 329052 7678904 ~ 7760870 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding upstream 505113 7577725 ~ 7584809 (+)
CI01000001_08113500_08119591 NA coding downstream 19902 8113164 ~ 8119707 (+)
CI01000001_08174175_08184832 NA coding downstream 80021 8173283 ~ 8185874 (+)
CI01000001_08208872_08234456 NA coding downstream 114821 8208083 ~ 8234580 (+)
CI01000001_08248565_08260072 AGRN coding downstream 155303 8248565 ~ 8260101 (+)
CI01000001_08271059_08344201 AGRN coding downstream 177797 8271059 ~ 8344201 (+)
G17252 NA non-coding upstream 8180 8081512 ~ 8081742 (+)
G17216 NA non-coding upstream 51279 8038244 ~ 8038643 (+)
G17236 NA non-coding upstream 54738 8034979 ~ 8035184 (+)
G17233 NA non-coding upstream 59372 8028234 ~ 8030550 (+)
G17177 NA non-coding upstream 126020 7962777 ~ 7963902 (+)
G17215 NA non-coding downstream 186091 8279353 ~ 8282894 (+)
G17209 NA non-coding downstream 297801 8391063 ~ 8396912 (+)
G17292 NA non-coding downstream 400172 8493434 ~ 8493705 (+)
G17294 NA non-coding downstream 413505 8506767 ~ 8508481 (+)
G17188 NA non-coding downstream 421606 8514868 ~ 8515415 (+)
G17234 NA other upstream 57439 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 549336 7531541 ~ 7540586 (+)
G15995 NA other upstream 2374971 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2799966 5279837 ~ 5287698 (+)
G15794 NA other upstream 3025218 5061218 ~ 5064704 (+)
G17353 NA other downstream 1122760 9216022 ~ 9228859 (+)
G17354 NA other downstream 1141201 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1325066 9435836 ~ 9436373 (+)
G18896 NA other downstream 2146638 10239900 ~ 10241492 (+)
G18873 NA other downstream 2163850 10223879 ~ 10260714 (+)

Expression


Co-expression Network