CI01000001_08248565_08260072 (AGRN)


Basic Information

Item Value
gene id CI01000001_08248565_08260072
gene name AGRN
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 8248565 ~ 8260101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_08248565_08260072.mRNA
CCCTGAAGGACCCGTGCAGTGAGGTGACCTGTAGCTTTGGCAGCACCTGCATCCAGTCATCAGACGGTCTGTCTGCCAAATGCATGTGTCCTCTGAATTGCGAGAACTTCCCCAAGCACGTGGTGTGCGGCAGCGATGGCCTGGACTACCAAAGCGAATGTGAGCTCAACATGAAAGCCTGTGCCACCCAGAAGAACATCCGTGTGCATCACCAAGGCCGCTGTGATCCTTGCAGTGACTCTCTGAATAACGTGAGTGTGGCCTGCCGGGTGAACCCAAAAACCTACAAGCAGTTTACCATCTACCTTCCTGAGACCTGCAAGCCCGACGCTACACCCATCTGCGGCAGCGATGGCCGCACCTACGATAGCAAGTGTCAGATGGAGCGGACGGCCCAGCAGAACAACCTGGAGATCAAGAAGGTCTATTCAGGCAGCTGCAAGGAGAAAGGGAGCTGCCCGAACGATTGTAAGTTCAACGCCAAGTGTTTGCTGGAAAACGGAGAGTTTCTGTGTTCCTGCAACCCCATACAATGCGACGGCACGTACAAGCCCCTGTGCGGAAAGGACGGCAAGACGTACCCCAACGACTGCGAGAGGAAACTCGAAGAGTGCCGGACCAAGACAGACATCCCCATCAAACATCAAGGGCCTTGTGAGACAAGCAGAGCTGGGTCACTGTGTCAGCAGTGCTCGTCGAGAGACACGATTCGCTCTGAAATCAAAGAAATGTGTAGTGCTGAGAAAGGTCAACAAGAGATCGCAGCTCATAAGGAAAACAGAAAACACTGTGAAAGTAGAAAGATTGAGTACAAAGGATACACAAGAACAGACTGTTTCCTCATCTGAAAGTCTATCTGCATTCTGTTGATGGAGCA

Function

symbol description
agrn Predicted to enable serine-type endopeptidase inhibitor activity. Acts upstream of or within anterior/posterior pattern specification and nervous system development. Predicted to be located in membrane. Predicted to be integral component of membrane. Is expressed in several structures, including immature eye; nervous system; neural tube; notochord; and pronephric duct. Human ortholog(s) of this gene implicated in congenital myasthenic syndrome 8. Orthologous to human AGRN (agrin).

GO:

id name namespace
GO:0043236 laminin binding molecular_function

KEGG:

id description
K06254 AGRN; agrin

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_08248565_08260072.mRNA True 877 mRNA 0.52 4 8248565 8260101

Neighbor

gene id symbol gene type direction distance location
CI01000001_08208872_08234456 NA coding upstream 13985 8208083 ~ 8234580 (+)
CI01000001_08174175_08184832 NA coding upstream 62691 8173283 ~ 8185874 (+)
CI01000001_08113500_08119591 NA coding upstream 128858 8113164 ~ 8119707 (+)
CI01000001_08091363_08093148 AGRN coding upstream 155303 8089922 ~ 8093262 (+)
CI01000001_07935720_07951221 PLEKHN1 coding upstream 296656 7935720 ~ 7951909 (+)
CI01000001_08271059_08344201 AGRN coding downstream 10958 8271059 ~ 8344201 (+)
CI01000001_08365139_08380569 PTPN11B coding downstream 104128 8364229 ~ 8380694 (+)
CI01000001_08427984_08438912 NA coding downstream 167883 8427984 ~ 8439430 (+)
CI01000001_08444733_08450428 NA coding downstream 184632 8444733 ~ 8450924 (+)
CI01000001_08540376_08551579 CLCNK coding downstream 279802 8539903 ~ 8551725 (+)
G17252 NA non-coding upstream 166823 8081512 ~ 8081742 (+)
G17216 NA non-coding upstream 209922 8038244 ~ 8038643 (+)
G17236 NA non-coding upstream 213381 8034979 ~ 8035184 (+)
G17233 NA non-coding upstream 218015 8028234 ~ 8030550 (+)
G17177 NA non-coding upstream 284663 7962777 ~ 7963902 (+)
G17215 NA non-coding downstream 19252 8279353 ~ 8282894 (+)
G17209 NA non-coding downstream 130962 8391063 ~ 8396912 (+)
G17292 NA non-coding downstream 233333 8493434 ~ 8493705 (+)
G17294 NA non-coding downstream 246666 8506767 ~ 8508481 (+)
G17188 NA non-coding downstream 254767 8514868 ~ 8515415 (+)
G17234 NA other upstream 216082 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 707979 7531541 ~ 7540586 (+)
G15995 NA other upstream 2533614 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2958609 5279837 ~ 5287698 (+)
G15794 NA other upstream 3183861 5061218 ~ 5064704 (+)
G17353 NA other downstream 955921 9216022 ~ 9228859 (+)
G17354 NA other downstream 974362 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1158227 9435836 ~ 9436373 (+)
G18896 NA other downstream 1979799 10239900 ~ 10241492 (+)
G18873 NA other downstream 1997011 10223879 ~ 10260714 (+)

Expression


Co-expression Network