CI01000001_07935720_07951221 (PLEKHN1)


Basic Information

Item Value
gene id CI01000001_07935720_07951221
gene name PLEKHN1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7935720 ~ 7951909 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07935720_07951221.mRNA
ATGGGGAGTAGTATGTCATGCGTCCCCCAGCACAACTTCAGGTTCTCCAGCAAGAGTTTCATACGGAGGAACAGCAGCCGTTTGTTCCGGAAAAAGTACCCACAGGAGGGACAGGAGAAGTCCAATAGCATCATCAACATTCTCTGCACCGTCACCCCAAGAAAGGAAATGTCCCCCAAAGATCTCCAGACAATTGAGAACATCAAATGGGACCCTCCATTCCCCTACGACCCAGCTAGTGGATGGAAGAAGAGCAGCATTAATGTGAAGAACTATGGCAGAATGATCCACAGCTCCAAAGTCCGCTTCCGCTTCCTGCACTGCCAGGATGTGCATGACTGCTACCTGGACCTGTTCCAAACCCACCTCCATTTTGTCTCCAACAACACAACTGGACTCACATACCAGGGAACACTTCCTCTTAAAGAGCTCACGATTTGCAAGGTGCAGAACAGGAACAGCTTTGGTGATCTGCAGGAATTTGCATTCCAGATAAACGTGTTATTTGAGGGTGGAATTTGTGACTCTCAACTAACCAGAAAACAAAAGATTGTTGAGGCGTTTGTCGTAAAGCCACACTATGTAGGTCCAAAACCACTTCCCATGTTCGGACATTCCAGAGGGGTCAGCCTGAACCCTATCATCGTGTACTGCTCGACAGAGGAGGAGATGAACAACTGGTTTGGGCTTATGAAAGAACAAATCGAGGCCAATGGCGGCAATGCAATCGAACCGGAGACATATACAAGAATTAAGGTACAGTGCTCAGAAGAAACCACAGTGGGAAAGGAGGAGTTGAGGAACTCCATCAGTAAAGAGCCTATCAATGAGTGGGAGGGCTCGCAACGAGAGAGTCTAGGGACCATCACTTACGTCACGAAAGTCAGGCTGCAACACATGCCATGTCAGCATAAGGAGGGTCTAAATTCACTTCCATGCTTTCTTGAGAGGAGCAAAGCAGGCTCAGTTTACACTCAGGGTATGGTCACATTCACACCACCCTCATTAGTCAAAGTCTGCCTGGAGCAGTATGACCGTCTGCTGGTGCTGTACCCCAACTATCTCATAATTCTGTCAGAAGAGAGTGATGGCCTCTTTTACAAGGGCAAACTTCCTCTCAACATGATCACAGTTACAACTCCCTGCCAGGACATCAAACCTAACACGTTTATGATCGAGGGGAAGTTGATAAACCCCATCATCGTGTCCTGTCTGAACAAGAGCGCGTTCCATGACTGGATCCAGTTTTTTAAAAGTGCTGACGTCCCCATCCTCAGCCCTCCTCCCCCTGTGTATGACATCATTTACACTCCAACACAGAAACAGGCTGTAGAGTTTGACAGGTGGAGCGGCAGCAGCCACGGAGTTACTGACCCACTAAGGCAGTCTCAGGACAAACGCAGATCCCATGAGCTCCAGCTGCCTAGTGCCGATGACAACCCTGTGTCCCCTGGTTACGCTGAGCCTCTCTGCTTCATTTCCAGCAGGCCGACCTCCTCAGACACACAGTACTCGGCTCACCTGGGCAGCAGGAGCAGCAGCTTCTCCTCTCGTGTCAGACCCACCACGGACCACCACCCCGTTTCTCTCCACTACTCCTCCCCGCCACAGTCATCCTATCTCGCCTCTGAAGGGCCCATGTCACCGGTTTACAACATGCCGTACAGTTCTGTGCACTGCAACGGCCCTGTTCAACGAATCGAGAAAGCACCACTAGTTAAGTCAAACAGCTGGAGCACACCACAGACAAATGTCAAACACCAGTTCTTAGTTCCTCACCGCCACTCGGATTTGGTCTCCCACCGCAAACCTCTCTCGCCCCTTTATGATGACCCCAGCACCCCTAGTATGTACCCTCTGGAGGAGAGCTCTGCACAAGCGTCGCACTCTTCTCGGGGCTCCATAGAGCAGTCGTACCCTCCTCTCCTTCCTCCCTCCTTCCGGCTGTGCACTCCTCCTCTTGGGCGGAAAAACAGACATGGCAAGGCCCAGGAGCCCGAGGTGGTCAGCAGCCAGTGGTCTGATGAGCTGCGAGCCGAGGCCGTTTCCAGACTGAAGATACTGCCTGCTCCAAACAGACAGCCACAACACAACCACATCTCTCAGAGAGGTTTCTCAGGTCACACTGTCATGGAGGCACAGCAGATATCTTACGGTTACTCGCCAGATGACTCGTACCTTCAACCAGTGGAGCCAGATGACCAGGAAATGGACTATGATAACATATGGGAGTTTGACCCGGATAATAGGATGATTCAGGCCCTGCCTGGAACTTCACCACACCGGACACAGGCTTACTTTGGAGCTCAAGGCCTGGGCGCTATGACAACACAGCAGAGATGGTCATAAAAGAGAACAATGGGCTTATGCCCGTCCGGACTTGCACACATAGCAGACTAATCAAAGCCACACATGCACAATGGGCATGTCTTTACCAGGGGCCGGCATGCCCGAGTATCAGGATATTCACAGTTTGTTTATTCAATGGCTCTATGACACATTTTGCACATGTAATATACTTTAATTCTGTGGTGATGGTTTCACACTGCTGTATGTATTCGGTACGAACAAGTGTGCTGTATTTATGTATATATGAATATAAGGAAAAAGTACTCCATTTTTTCAAAGGTAGCATTTGGGAGTTTTTGCATTTAGTTTAGTTTGTGTCCTTTGTGAGTCCTACACACTACTGGAAATTGTTTGTATATGGATATTTTTAAATACATACCAAATGTAAATATATTCTTTTTTCTATTTAAGTGTTAAATGTAAGTTTTTTATTATTATTGATTATTATTATTGTTATAATATTTATATTTCTTTCATTATGGCTTTCTACTATCTGTTCAAAAGATCTATTTTTTTCTGTGGAGGTCAAAGGTATTCATTCAAAGAAAAAGTTTTGTACTGTTTTCACTGTTTATGACAAACAAACAGTGATAAAACATAGCTGTAACACTGCTTTAGCTGTTCACTTTAAATATGAACGTGTGGTTTATTTTTTACATTTTTGAGTGATTTAAAATGTATTTTTAAA

Function

symbol description
plekhn1 Predicted to enable phospholipid binding activity. Predicted to be involved in 3'-UTR-mediated mRNA destabilization; positive regulation of apoptotic process; and response to hypoxia. Predicted to be active in cytoskeleton and mitochondrial membrane. Orthologous to human PLEKHN1 (pleckstrin homology domain containing N1).

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07935720_07951221.mRNA True 3037 mRNA 0.47 18 7935720 7951909

Neighbor

gene id symbol gene type direction distance location
CI01000001_07908382_07926320 KLHL17 coding upstream 9243 7908382 ~ 7926477 (+)
CI01000001_07811962_07871073 SAMD11 coding upstream 64647 7811962 ~ 7871073 (+)
CI01000001_07678904_07760870 RERE, REREA coding upstream 174850 7678904 ~ 7760870 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding upstream 350911 7577725 ~ 7584809 (+)
CI01000001_07558102_07564471 SLC2A5 coding upstream 371054 7556925 ~ 7564666 (+)
CI01000001_08091363_08093148 AGRN coding downstream 138013 8089922 ~ 8093262 (+)
CI01000001_08113500_08119591 NA coding downstream 161255 8113164 ~ 8119707 (+)
CI01000001_08174175_08184832 NA coding downstream 221374 8173283 ~ 8185874 (+)
CI01000001_08208872_08234456 NA coding downstream 256174 8208083 ~ 8234580 (+)
CI01000001_08248565_08260072 AGRN coding downstream 296656 8248565 ~ 8260101 (+)
G17103 NA non-coding upstream 29696 7874209 ~ 7906024 (+)
G17137 NA non-coding upstream 143108 7792204 ~ 7792612 (+)
G17106 NA non-coding upstream 239677 7597981 ~ 7696043 (+)
G17116 NA non-coding upstream 359875 7575512 ~ 7575845 (+)
G16997 NA non-coding upstream 428839 7505945 ~ 7506881 (+)
G17177 NA non-coding downstream 10868 7962777 ~ 7963902 (+)
G17233 NA non-coding downstream 76325 8028234 ~ 8030550 (+)
G17236 NA non-coding downstream 83070 8034979 ~ 8035184 (+)
G17216 NA non-coding downstream 86335 8038244 ~ 8038643 (+)
G17252 NA non-coding downstream 129603 8081512 ~ 8081742 (+)
CI01000001_07531945_07539781 NA other upstream 395134 7531541 ~ 7540586 (+)
G15995 NA other upstream 2220769 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2645764 5279837 ~ 5287698 (+)
G15794 NA other upstream 2871016 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 4314269 3618075 ~ 3621451 (+)
G17234 NA other downstream 80215 8032124 ~ 8032483 (+)
G17353 NA other downstream 1264113 9216022 ~ 9228859 (+)
G17354 NA other downstream 1282554 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1466419 9435836 ~ 9436373 (+)
G18896 NA other downstream 2287991 10239900 ~ 10241492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location