CI01000001_07678904_07760870 (RERE, REREA)


Basic Information

Item Value
gene id CI01000001_07678904_07760870
gene name RERE, REREA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7678904 ~ 7760870 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07678904_07760870.mRNA
ATGACTGCCGACAAAGAGAAGGACAAGGAGAGGGAGCGCGACCGGGACCGGGACAGAGACCGCGAGAAGCGGGACAAAACGCGAGAGAGCGAGAGCTCACGGCCCCGGCGCAGTTGCACGCTGGAGGGTGGTGCTAAGAACTATGCAGAGAGCGAACACAGTGAGGACGACGACAACGAGACGCCTGGGGCCGCCACCGCAGAGGAGGCCACCAAGAAAAGCAAGAAGAAGCTGCCCAAGAAGAAATCGCGATATGAGCGAACGGAGAACGGCGAGATCACTTCCTTCATTACGGAGGATGACATTGTTTACAGACCTGGCGATTGTGTGTACATAGAGAGCCGACGGCCGAACACGCCCTACTTCATCTGTAGCATTCAGGACTTCAAGCTGAGTAAACGGGACCATCTGTTAATGAATGTGAAATGGTATTACCGCCAGTCTGAGGTACCTGACTCCGTCTACCAGCACCTGGTGCAGGACCGCAACAATGAGAACGACTCTGGTCGTGAGCTGGTTATTACTGATCCCGTGGTTAAGAGCAGAGAGCTTTTCATTTCAGACTATGTGGACACTTATCATGCTGCTGCCCTCAGGGGGAAATGTAACATTTCACACTTTTCTGACATATTCGCTGCCAGGGAGTTCAAAGCACGAATCGACTCTTTCTTCTACATCTTAGGATATAACCCAGAAACCAGGCGATTAAACAGTACACAAGGGGAGATTCGAGTCGGTCCTAGTCACCAGGCCAAGCTGCCAGAGCTCCAGCCCTTTCCCTCTCCTGGAGGTCAGACAGTGACAGAGAATGAGGAGCTGGTCTGGATGCCTGGGGTCAACGATTGTGACCTGCTCATGTACCTGCGGGCAGCCAGGAGCATGGCAGCCTTTGCAGGCATGTGTGATGGGGGGTCAACAGAGGACGGCTGCCTCGCCGCCTCACGAGACGACACTACACTTAACGCATTAAACACTCTTCATGAGAGCAGCTATGATGCCGGGAAAGCCCTGCAGCGGTTGGTGAAGAAACCAGTGCCCAAGCTGATTGAGAAGTGCTGGTCAGAGGACGAAGTGAAACGATTCATAAAGGGTTTAAGGCAGTACGGGAAGAACTTTTTTAGGATTCGGAAAGAATTGCTCCCTAACAAGGAGACGGGGGAGCTGATCACCTTTTACTATTATTGGAAGAAAACCCCGGAGGCTGCTAGTTGCAGAGCCCACCGTAGGCATCGCAGACAACCCGTCTTCCGCCGGATCAAGACCCGCACCGCCTCCACCCCCGTCAACACTCCTTCCCGCCCACCTTCCAGCGAGTTCTTGGACTTGAGTTCAGCCAGCGAAGATGACTTTGACAGTGAAGACAGCGAGCAGGAACTGAAGGGCTACGCCTGCCGCCACTGTTTCACTACCACCTCCAAGGACTGGCACCACGGGGGTCGCGAGAACATCCTGCTGTGCACCGACTGCCGGATCCATTTTAAGAAGTACGGCGAACTACCTCCCATTGAGAAGCCTGTAGACCCACCACCGTTTATGTTCAAACCTGTCAAAGAGGAAGACGATGGACTCAGTGGGAAGCATAGCATGAGGACTCGACGGAACCGCGGCTCAATGTCAACGCTACGAAGTGGCCGCAAGAAGCAAACCGCCAGCCCAGATGGCAGAGCCTCACCAACCAATGAGGATCTGCGCTCCAGCGGGCGTACCTCACCCAGTGCAGCCAGCACCTCCAGCACTGACAGCAAGACTGACTCGATGAAAAAACCCAGCAAGAAGACGAAGGAAGAGGCGCCATCGCCTATGAAGAGTGCCAAACGTCAGAGAGAGAAAGGAGCCTCGGACACAGAGGAGTCCGAGAGGGCAAGCGCCAAGAAATCAAAAACGCAGGAACTTCGGCCGGACTCGCCCTCAGAGTGTGAGGGAGAGGGCGAGGGTGAGAGCTCGGACGGTCGCAGTGTGAATGACGAGGGCAGCAGCGATCCCAAGGATATTGACCAGGACAACCGCAGCTCCTCTCCCAGCATCCCCAGCCCACGCGACAACGAGAGCGACTCAGACTCCTCGGCGCAGCAGCAGATCCTCCAGGGTCAGCATCCTCCGGTCATCCAGTGCCAGACAGGGGCTTTACCCCCGGCCCCTCCTTCCACAGCGGCAGCCTCCACACCACCCACCTCAGGCGCGCCTTCGCTGTCCTCCCAACCGTCCCCCTCCATCCCCCCTACCTCCATGCCACCTCAGCAGACACCTCCAGCAGGTCCGCTGTCTCTCATCCAGTCAGGGGCGCAGAGGCTGCCCTCACCACATTCCCCACTGCAGGGCATGACTCAGCCTCCTCCACCTTCTCAGACTGGCCCTCAGTCCCTGCAGCCTCCACTACACGGCCCCATGCCGCCCATGGGCCACCCTCTGCAGGCGGGACCGTCACACATGCCTCATCCCCATGCTTTACCTGCTCAGTCCTTCCCTATCGGTCAGTCTCAGGTCCCCCCTTCACCTCTCTCGGGTCAGTCCCAAGCTGCCTCCCTGTCTCAACAACAGCGACCTCACACCCCTCCATCCCAGTCGCAGTCCTCCTCACAGAGCGGCAGCCAGCCTCCCAGAGAGCAGCCTCTCCCGCCAGCACCATTGCCTATGCCCCACATCAAACCTCCGCCTACCACCCCTATCCCACAAATGCCAAACCCTCAGTCACACAAGCACCCCAGCCACCCCCCATTCCCGCAGATGCCTTCCAACCTGCCCCCGCCACCTGCCTTGAAGCCCCTCAGCTCCCTATCCACGCACCACCCTCCCTCCGCCCATCCGCCGCCCCTTCAGCTCATGTCTCAAAACCAGCAGCTACAGCCTTCACCAGTGCAACCTCCAGTGCTCACCCAGTCTCAAAACCTTCCGGCGACAGGAAGTCAAGCACCCCCACCAGCTCCTCCGCTCCCTTCCTCTTCCTCTGCCTCACACTCGGCGCCTTCTCAGCCACCCTTCCCTCCTCATTCCTTCATGCCAGGCAGCTCGCCCGTTCTGTCACCCTCCACCGTTCCTTCCTCTGTGGCGAACTCAATGGCTATGCTGCAGCAGCCACCCTCCTCCATATCCATGCCCCTGCCTGCATCAGTCAGTGCGCCCTGCCCGGGACCCTCCACTGTGCCACCTGTACAGATTAAAGAAGAGCCACTGGATGAGGCAGAGGAGCCAGAGAGTCCTCCACCACCACAGAGGAGCCCTTCACCTCCACCCACCATCGTCAACACTCCCAGTCACGCCAGCCAGTCTGCACGGTACATAACGTTTTTTGTTTTTTTCATCAATAGAATTAATCTGTGGAAATATTTCTGCACTTCAACAGCTTATATCTGTTATGAAAGAAGAAAGATTTCACACAGCAAAATGACACTGACTGTGGTAACTTTAAAAGATTATTCATATTATTATTCCCATCCGTCCTTTTTACAGAAAGCTTCCAGTTCTTCTCATGAGGGTCGCATGGGTGAACCCCCAATGGCGGGATCGGCTCATATGCGGACCTCTTTTGATCCACCACCCACCACCATCGCCACTGTGCCCCCTTACATCGGCCCTGACACACCCGCCCTGCGCACGCTCAGCGAATACGCTCGACCCCACGTCATGTCCCCCACCAACCGCAACCATCCCTTCTTCGTCTCACTCAACCCCACAGACCCACTCCTGGCCTACCACATGCCTGGTCTGTACAACGCAGACCCCGGCATGCGTGAGCGTGAGCTGCGGGAGCGAGAGATACGGGAGAGAGAGATCCGAGAGAGGGAGCTTAGAATGGAGAGGATGAAGCCAGGCTTTGAGGTCAAACCTCCAGAACTGGACAGTCTGCATCCTTCCGCCAACCCCATGGAGCACTTTGCACGGCACGGGCCTATTGGTCTCCCACCCATGGCTGGCCCTCATCCATTTGCCTCCTTCCACCCGGGCCTGAATCCACTGGAGCGGGAACGGCTGGCACTGGCTGGGCCACAGTTACGGCCTGAGATGTCCTACCCTGAGAGGCTACATGTTGAGAGGATGGCTTCTGTAGCAAACGACCCCATTGCACGGCTGCAGATGTTCAACGTGACGCCACACCACCATCAGCACTCGCACATCCATTCACACCTACACCTGCACCAACAGGACCCTCTGCACCAAGAAGGTGGTGGTGAATGTCTTGTGTGTCCCCCAGGTTCTGGGGCACATCCGCTCGTAGACCCACTGGCCGGCGGACCGCACCTCGCCCGGTTCCCCTACCCACCTGGAGCCATCCCCAACCCCCTGCTCGGACAGCCCCCGCATGAACACGAGATGCTCCGGCACCCTATGTTCGGCGCTCCATATCCCAGAGATCTCCCAGGTGGGCTACCACCACCCATGTCAGCGGCACACCAGCTGCAGGCCATGCATGCACAGTCTGCAGAGCTACAGAGATTGGCCATGGAGCAGCAGTGGCTACACAGTCATCACCACATGCACGGAGGCCCTCTGCCAGGACAGGAGGACTATTAC

Function

symbol description
rerea Predicted to enable transcription corepressor activity. Acts upstream of or within several processes, including pharyngeal system development; regulation of histone deacetylation; and regulation of signal transduction. Predicted to be active in nucleus. Is expressed in several structures, including germ ring; gut; head; nervous system; and pectoral fin bud. Orthologous to human RERE (arginine-glutamic acid dipeptide repeats).
rere Predicted to enable transcription corepressor activity. Predicted to be involved in negative regulation of transcription, DNA-templated and positive regulation of transcription, DNA-templated. Predicted to act upstream of or within chromatin remodeling and nervous system development. Part of nucleus.

GO:

id name namespace
GO:0048755 branching morphogenesis of a nerve biological_process

KEGG:

id description
K05628 RERE; arginine-glutamic acid dipeptide repeats protein

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07678904_07760870.mRNA True 4509 mRNA 0.58 20 7678904 7760870

Neighbor

gene id symbol gene type direction distance location
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding upstream 94095 7577725 ~ 7584809 (+)
CI01000001_07558102_07564471 SLC2A5 coding upstream 114238 7556925 ~ 7564666 (+)
CI01000001_07544981_07548224 GPR157 coding upstream 130198 7544910 ~ 7548706 (+)
CI01000001_07531945_07539781 NA coding upstream 138339 7531541 ~ 7540586 (+)
CI01000001_07527533_07530601 NA coding upstream 147833 7527029 ~ 7531071 (+)
CI01000001_07811962_07871073 SAMD11 coding downstream 51092 7811962 ~ 7871073 (+)
CI01000001_07908382_07926320 KLHL17 coding downstream 147512 7908382 ~ 7926477 (+)
CI01000001_07935720_07951221 PLEKHN1 coding downstream 174850 7935720 ~ 7951909 (+)
CI01000001_08091363_08093148 AGRN coding downstream 329052 8089922 ~ 8093262 (+)
CI01000001_08113500_08119591 NA coding downstream 352294 8113164 ~ 8119707 (+)
G17116 NA non-coding upstream 103059 7575512 ~ 7575845 (+)
CI01000001_07421548_07447343 RAP1GAP non-coding upstream 170914 7421548 ~ 7447505 (+)
G16997 NA non-coding upstream 172023 7505945 ~ 7506881 (+)
G16961 NA non-coding upstream 186793 7461128 ~ 7492111 (+)
G16978 NA non-coding upstream 248837 7429190 ~ 7430067 (+)
G17137 NA non-coding downstream 31334 7792204 ~ 7792612 (+)
G17103 NA non-coding downstream 113339 7874209 ~ 7906024 (+)
G17177 NA non-coding downstream 201907 7962777 ~ 7963902 (+)
G17233 NA non-coding downstream 267364 8028234 ~ 8030550 (+)
G17236 NA non-coding downstream 274109 8034979 ~ 8035184 (+)
G15995 NA other upstream 1963953 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2388948 5279837 ~ 5287698 (+)
G15794 NA other upstream 2614200 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 4057453 3618075 ~ 3621451 (+)
G17234 NA other downstream 271254 8032124 ~ 8032483 (+)
G17353 NA other downstream 1455152 9216022 ~ 9228859 (+)
G17354 NA other downstream 1473593 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1657458 9435836 ~ 9436373 (+)
G18896 NA other downstream 2479030 10239900 ~ 10241492 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location