G16978


Basic Information

Item Value
gene id G16978
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7429190 ~ 7430067 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19055
AGTAACTTTTGCATTTTTAAAATGAATAAATAAATCATTTATTCCTTCATTTTATTTTTATGTGGCTCTCCTAGTGCTCCATATATTGCCATAAAATACCATTTAGTGATTTTGTCCATGAGTGTTCTTTTTGTAACCTTTATAAATATATATCACTATTATAAAGTATCCTAAGGACCAGATATACTAACAGCTTGCGCCAACGCAAACCCTCTTTTGGCATTAAAAAACTATTGTCAGGATTTACTAAAGACACGCAGTGCAAAATTAGGGGCTGACCTTATTGCATATGCATTTGTAGGAGTTTCACTTAAGATGCAAAATTTATGGGAGGAGAGTATTTAAATGAATCACGCAACGCGATTTACTAATGTTTGTGCTAGTCAATTTACTGGTATTTGCGCCATTATTTAACACCCAAAAAAAGCATGTCTTAACCCATTTTGCAACATGGCTGCAATTGTTGCTGCTAGGAGGAGACACCGCAGAGAACAGGGAGCGCGTGGTAGAAGGGAAAAAATATTTTCCACTCGTATTAATTTCTTTGGAATGCCAGAGGAAGATGTTTTCCGTATATCACATGTAACAAGTTGCGCCTGTGTCAGCCCGCACCTGATGAGCATCAGCTCTGCTTATTTGTGACCCAACGTTAATTTGCACTGCTCTTGGTAGATTATGTTGGTCATTATGTAAATGATTTGACTGCGTCTGTTTTCTTTAATTTGCGCGTCAGCATTAGATCACGTGCAAAACTTGCCACTCCCATCGGCGCATATGTGGAATTGCGCTCTTACGCTAATTTGCCCCGTTTAGTAAATCTGGCACTAAATCTTAGATTGACTGTCT

Function

NR:

description
PREDICTED: butyrophilin subfamily 1 member A1-like isoform X4

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU19055 True 846 lncRNA 0.38 2 7429190 7430067

Neighbor

gene id symbol gene type direction distance location
CI01000001_07405859_07406484 NA coding upstream 22501 7405144 ~ 7406689 (+)
CI01000001_07330166_07335508 GLUT1, GLUT1A, SLC2A1A, SLC2A1B coding upstream 93154 7330166 ~ 7336036 (+)
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding upstream 162288 7231558 ~ 7266902 (+)
CI01000001_07208833_07215412 NA coding upstream 213683 7208283 ~ 7215507 (+)
CI01000001_07056922_07065716 DHRS3, DHRS3A coding upstream 362647 7056922 ~ 7066543 (+)
CI01000001_07527533_07530601 NA coding downstream 96962 7527029 ~ 7531071 (+)
CI01000001_07531945_07539781 NA coding downstream 101474 7531541 ~ 7540586 (+)
CI01000001_07544981_07548224 GPR157 coding downstream 114843 7544910 ~ 7548706 (+)
CI01000001_07558102_07564471 SLC2A5 coding downstream 126858 7556925 ~ 7564666 (+)
CI01000001_07577777_07584809 ENO1, ENO1A, ENOA coding downstream 147658 7577725 ~ 7584809 (+)
G17061 NA non-coding upstream 105575 7323286 ~ 7323615 (+)
G17057 NA non-coding upstream 110160 7316664 ~ 7319030 (+)
G16970 NA non-coding upstream 144286 7279243 ~ 7284904 (+)
G17019 NA non-coding upstream 276765 7152094 ~ 7152425 (+)
G16977 NA non-coding upstream 305197 7091753 ~ 7123993 (+)
CI01000001_07421548_07447343 RAP1GAP non-coding downstream 3616 7421548 ~ 7447505 (+)
G16961 NA non-coding downstream 31061 7461128 ~ 7492111 (+)
G16997 NA non-coding downstream 75878 7505945 ~ 7506881 (+)
G17116 NA non-coding downstream 145445 7575512 ~ 7575845 (+)
G17106 NA non-coding downstream 167914 7597981 ~ 7696043 (+)
G15995 NA other upstream 1714239 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 2139234 5279837 ~ 5287698 (+)
G15794 NA other upstream 2364486 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3807739 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5758186 1667762 ~ 1671167 (+)
G17234 NA other downstream 602057 8032124 ~ 8032483 (+)
G17353 NA other downstream 1785955 9216022 ~ 9228859 (+)
G17354 NA other downstream 1804396 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 1988261 9435836 ~ 9436373 (+)

Expression


Co-expression Network