G16970


Basic Information

Item Value
gene id G16970
gene name NA
gene type non-coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7279243 ~ 7284904 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>TU19046
ATGAGTTTGAACTGGCTGGATCTGGACATTAACTGCAGTAAGCTGTAGAGGTGCTGTTTTGCTGTGGCTCAGCATGGGCGGCTGTCCATTCTGGGCAAGTGCCTGCTGACTCACAGTGGTGGAATGGAAAATGGTGGCTTGTTGGCAGGTAACAGGCACTTTGGGCAGCAAAGGGATAGGGCACTGCTGAGGCTGAGCTGGCAGGGCAGGCTGAATGGCTACAGCTTGCACTGTGTGAGGATGAATGGTGGCAGCTTCTAAGAGCTGAGCTTGACCTCTCTGCAGTATCTGAGGCTGCTGCTGTATCACAAACTGATGCTTGTGCTGCTGGAGCAGCTGATGGGTCTGAATTTGGGTATATGCTGGAATAGATATAACAAAAGACAACTATATTTAATGATTAATGTGACTCATTTCAGGTTCAGAGAAACAACAGAGTATGATAAATCAGCTAAACTATAGTACATAGATACATATAGTGCATGATAGATAACTACGTAGAAAAAATAATATCTGATATGCGGATATTGTACTTTTCCATTGTACTTTTAATCGAGCTTTTAACAGCAGCTGTTAGTTGTTGTGCATAAGAAAGTTTGTGTTTGTGTGTATATATATATATATATATATATATATATATATATAACTGATTTACCATACTAAAAGCATGTATATAATACATTTACGCCTTGTGAAAATTATGTAAAATAATATCTCACTAGAAGATTTTATTTTAGACTATATCACTACATACTGAATGTGATGCTTGTGAGATTCCCTGAGGGGCTTTTCATTGTTCTATCAGGTTTGTATTGCTGACTTGAGGTTAATGGGTTCATTTGGCTGAGTTCAGCTTTCTGATCTGGAATGTCAACGGTAAGGTTTATAAAGCATAGCTCTACTCATCCATTCGTGAAGCGCCATATGACCTTGATGAATCAGATGGCTCCAAGTAACCTTCAGTTAGACACACTCTGACAGCCTGTGCTGTGGTAACTCCAAGGAATGCCAGCCTAATTTGTGCAGGACTTTTAAATGTGCTATGAGTCATTTTACAATGTTCATACTTTCTGGTCTATTAGGCTGAACAATGAAGGACAGTTGTTTTGGACTCTTTGTCCTAATTTGTAGAACGTTACTTGGACTTAGGGTTAGTTCACCCAAAAATGAAAATTACGTCATTTACTCACCCTTGTGTTGTTCCACACCCACAAGACCTTCGTTCATCTTTGGAACACAAATTAAGATACTTTTGATAAAATCTGATGGCTCAGTGAGGCCTGCATTGCCAGCAAGATCATTTCCTTTTTCAATATCCAGAAAGCTAATAAAGACATATATAAAACAGTTTATGAGAGTACAGTGGTTCAACCCTATTATTATTAAACAACGAGAATACTTTTAGCAAAAGATTCGAAGCTTCATGAAGCAGTGTTTTGAAATCGCCCAACACTAGTTATTGTTGAATAAAGTCATTATTTTGTTTTTTTGGTGCACAAAAAGTATTCTCGTCACTTTGTAATATTGAGGTTGAACCACTGTACTCACATGAACTGTTTTAAATGTTTTTAGTACCTTTCTGGGAATTGAAAAAGGAAATGATCTTGCTGGCAATGCAGGCCTCACTGAGCCATCGGATTTTATCAAAATGGTCTTGATGTCAAATTCCTCCAAGAAAACAAAGAGAGAGTGTTAAGAGGTTGTAGGAGTCTGTTTTTCATCGTTTATGTGGTGTTTTGTAGTGTCAAAATGAACACAATATTAGATAGTGTGCCATATTGAAACACCCTCCCCCGACAGCCTGCTAAGTTCAAAGCATTCATAGAATAGCAACAACAGATGCAGGGCCTTCTTTGAGCATTGAAGACCACATTCTGGTTCAAGTTCCACCCATGTTGATAAATAATTAACTGCTGCCCTTTCTCAGCACAGTTTAATATGACAAAAAAAGAAACGTCTGCAAAACCTCCTGGCCTTTGAGGGATAAGTGCTAAAGGATATCATTTACCCAGCCTCAATACTGAGTGCTACTTCAAACACGTGTATAAAAAAAATAAAAAATCCATTTATGTCTGTACTGTCATATACAGTATCGAAATCAAAGTATTGTGGAACATGATGACCAAACTCACATAGTATTTTCCTTAACTTTTTGCATTCCACTGCTCTGCTTTTCCCTTGTTTTTTTAATGTAAACATCTACAAGACTGACATGTTTGACTGTTCCACTCATGTCTCATTTCTTTTGCAGCTTCTCACTCTTGACAAAGCATTCTTAAAATGCACCGTTCAACTTCTAAAAAAAATTCTAGACCTTGCGTTTTTTCATTCCAATGCCCCACGTTGCATTCTTTCGTTGAAACGAAGTTCATTGATAAGGGAAGAAGGAAGTGGGAACCGGAAAATTTTTAACGCAATTTTAATTAAAAAAAAACCAACAACAACAAAAAGAAAGTAAAGCGGCAGCCCCTCATGGACGACTTCTGCATGAACTAAAACATACACAACATAAAGTCCCTTCTCTCTTATACTTCGCTGTCGTCACTCCTCCTTTAATCCGAACCACTGATTCGAAACAAAAGATTCGTAAAGCTTCGAGGCTTCATGAAGGAGTGTTTTGAAATCGCCCATCACTAGATATTGTTGAAAAGCCGTTATTTTGTTTTTTGGCCGCACAAAATGTATTCTCGTCGCTTTATAATATTAAAGTAGAACCACTGTACTCACATGAACTGTTTTAAATAAGAATTGAAACGAAATAAAATTCTCAAGATGCATTTCACTGCACACTGCATATTTAAACACAAGAACACATTCTGTGCGAACTTGATAAGCCTCTTAAAATAACTGCCAAAGTGGCTTGATGCAACACGCCACAACAATAAAAAATGTCAGTCTAGAGCAGGGCTCCTAGAATCCAAACACTGATCAAACTGACCTACCTGTAATTTTCAAGTAATCCTGAAGACCTTGATTAACTTGCTAGGGTGGCTTTGATTAGGGTTGGAGCAAAACTCTGTGGGGCAGTGGCCCTCTATGGCCAGATTTGAGGAACCCTGGTCTAGAGCATTCCTATATAACAGTTTGAAGAAAAAAAAAAACGTATGTGTTTTTCTCTGACTGGCTATTGATTACAGTCCCAAAGTAAAGGGGGTGGAGTTTCTTTGCTCATGTACAGACGTTATTGGTCTCTGAAGGAAAAGCTCTCCTAACTATTGTTCATTTCAGCTGATTAAAGAATCTGTTAGCCCACAATCTCAACCTTGATTAAAACAATTCATGGAGGCCCAACACTTCAGTTCTGCAGTGGTCACTCCAAGAAAGGTATGGTCTTAGGTTTCTCTCCAGTCGTGGTCCAAATACTTTGAGTTTCATGCTCCTGGCTATGTACTTCTCTTGTCTAATGAATTCCTTATGAAGAAAACACGGCCAGTGCGAGAGCGAGCCATTCAACACACCATTTCCATTTACCAATTGGTCTCTTCATAGACTTTTCCTCTCTAAATATAGTATATCCACCAAGATTTACCATAATAACAGGTCTTCATTTAGAAGCTACTGGAACTGGACAAATGTTTAAACAGAGCTGAATTCACTTATCATACTGCTATTTGTAGGTTCACGAAACTCTGTTAAGCAATGAGTGTGTAAAGAAAAACATACTGATGGATGGTGTTGCCAGTAAGTACTGACCCTTCTCACTGCTCCAGTGGTTTCTTTGGCTTCGTCTCTAGCTGTTCTTTGTATATATTGATGCTTGAACCCTCTCTGTCAAGCTTTCATGAAAGGAAATGGTCAGGACTTTACCACATACATAGAAACCCACACCCACAAATAACACATTAGCCCACTTGTGGTTTCCATTTGTATCGGATTGTAGTGGTCTACTGAAGGCTTGGCTTGTCCTGAGTGTGGCTTGTTGCTATTAATATGAATGTGACGGATGATGTGTTATGAGATTAATGGGCAAGAAATGGAAAAGTCTTTCTTAGGGGCAGTTTACACAGGACATATTCTTGTGTTCAATAAAGCGAATGAAACGGAGCACAGTAGTTTTTTAAGATGCCTTTTTATAGGTGTAACTGGTTTTAAATTTGGCATGCTGAACGCTTTTTTGCTTTCCATTGCGCTGCTTTTCCATTGTTTTTCTATGTAAGCATCATGCGGCAAATGTGTTTGAATTTGAATTTAGGCATCAAAACATAAATATATAGTATGAATTATGAAACACATATTAGTGTTTTTATAGATTAACTTAAAGGGATAGTTCACCCAAAATCATTTACTTGCCCTCTTGTACTTGATTCTTTGTTCTGCTGTACACAAAGGAAGATATTTGGAAGAATGTTAACCTGTTAATGAATGTTAATGCTGATAAATAAAAAAAAAAACAACAACTCTCTAATACCTAACTGATATGGCACCAATATGTCGTGTATCCATAGGTATAATGACTCAATAATTGCTTAACATTGACATATAACATACAGTACTGAGAATTCAGTTCAGTATCGTAAATAAATAAATTGCTGATGTACATTACTAAATGAATGGCAGATATACAGGGACCACTTTACCAGCATCTCACTTTACTAGCATGTGGGGCAGATTGTGTCATCGAACCAAAAAGGCTGTACATCTGTCTCAGTGATAAAGGATATCCTTTCAGAGAAGCTGGGCTTTGGAGGGGACAAACAAATAGAGAACCCCAACAACTACAAATGCACACTAAGTAGGTGTGCTATCGTGAAACACTGCTGCCCAGTGTGCACCTCAGGACCGCTGCCACAGCAATCCGACACCCTGTTTAATGCTCAAGGCCAGATGTCCCTCTCACTTCAGCTTTTCTTGTTGTTTTCACTCCTCCATTAGTGAGACAATCGAGATGGTACACTTTCACTGAATCCTCCCCTCGCTGCTTCATGTTAAGACCAGTGTTATTTTAGTATCACTGAGATATAATTACAGTTTTTATTAATATTTTGGATTAGTTTTTATAATTTCTGTTTTCAAATTTTAAGTGTTTTTGTCATTTTTATTAAAATTTAAAATGTTAAAATATAAATGTCTATATAGTTTTGTCATTTTATTTTAGTTTTAGCTATTTTAGTATATCAAGTTAAAGTAAATGATAATTAGAAATGTTGCCTTCCTTAGCAACTAGCTGAAATAAAATAAGTTTGTTTATTAGGTTAAGTTTATGTCATTTCAAGTAACAAAAATGTTTTTATGAGTTCAGTTGTAGCTAACTATAATAGCCCTGGTTAAGACACAGGGTTAAGACCAGGAAAAGCACACAGCAACCGGAAGTGATGGCCTACCTGTGCTGATGAGAGGATGGCCCGCCACTGAGGTCACATTGGGACACACGTTCAGCTCCCGTGTTGTGAGGTCACTGGTTTTGTCATTTTTTCCCACAGTCTCTGAGGATGTTTCTGCAGGACTGCCCTTTGCAGCAGCTCCCTGAGAGTTTGGCTCCGCTCCAGGACTCTTCAGTCGGGCCACTGGCTGGCTAGTCAAAGAAATCTGCGCTGACGCCCCAGGGGACTGTTTCACATTTAGGCTCTGTAACTGAGACTGAGAGAGGGAGGAAGTGAGCACACCCTGCTGGCCACGAAGAGCCAAGTTCTGCAC

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

RNA

RNA id representative length rna type GC content exon number start site end site
TU19046 True 5634 lncRNA 0.39 2 7279243 7284904

Neighbor

gene id symbol gene type direction distance location
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding upstream 12341 7231558 ~ 7266902 (+)
CI01000001_07208833_07215412 NA coding upstream 63736 7208283 ~ 7215507 (+)
CI01000001_07056922_07065716 DHRS3, DHRS3A coding upstream 212700 7056922 ~ 7066543 (+)
CI01000001_07045345_07052918 IGSF21B, IGSF21 coding upstream 226273 7045345 ~ 7052970 (+)
CI01000001_06996957_07040074 NA coding upstream 239162 6996957 ~ 7040081 (+)
CI01000001_07330166_07335508 GLUT1, GLUT1A, SLC2A1A, SLC2A1B coding downstream 45262 7330166 ~ 7336036 (+)
CI01000001_07405859_07406484 NA coding downstream 120240 7405144 ~ 7406689 (+)
CI01000001_07421548_07447343 RAP1GAP coding downstream 136644 7421548 ~ 7447505 (+)
CI01000001_07527533_07530601 NA coding downstream 242125 7527029 ~ 7531071 (+)
CI01000001_07531945_07539781 NA coding downstream 246637 7531541 ~ 7540586 (+)
G17019 NA non-coding upstream 126818 7152094 ~ 7152425 (+)
G16977 NA non-coding upstream 155250 7091753 ~ 7123993 (+)
G16937 NA non-coding upstream 333092 6936142 ~ 6946151 (+)
CI01000001_06893068_06917387 IFFO2A non-coding upstream 360981 6893068 ~ 6917660 (+)
G16317 NA non-coding upstream 478862 6800168 ~ 6800381 (+)
G17057 NA non-coding downstream 31760 7316664 ~ 7319030 (+)
G17061 NA non-coding downstream 38382 7323286 ~ 7323615 (+)
G16978 NA non-coding downstream 144286 7429190 ~ 7430067 (+)
G16961 NA non-coding downstream 176224 7461128 ~ 7492111 (+)
G15995 NA other upstream 1564292 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1989287 5279837 ~ 5287698 (+)
G15794 NA other upstream 2214539 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3657792 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5608239 1667762 ~ 1671167 (+)
G17234 NA other downstream 747220 8032124 ~ 8032483 (+)
G17353 NA other downstream 1931118 9216022 ~ 9228859 (+)
G17354 NA other downstream 1949559 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2133424 9435836 ~ 9436373 (+)

Expression


Co-expression Network