CI01000001_06996957_07040074


Basic Information

Item Value
gene id CI01000001_06996957_07040074
gene name NA
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6996957 ~ 7040081 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06996957_07040074.mRNA
ATGGAGACCGCATGCATGAGACAGTCGCTTAAATTTCTAGTGTCACCCAAAATCCACCTGGCTGGGTCTAAGAGGTTCTCATACTTCTGCTGGAGTGAGGGGGATGAGGACAAGAGGCACGAGTCCATGGTCCCTGGTGTGAATCAGAAGCCCCAGGAGGAGGAAGAGGGGGATGATGAAGATGAGGAAACTGGTGAGAAGTTTGAGTTTGATGACAGCGAAGACGAGCAGAATACAGCGGAAAACTCTGTTCAGAATAAAGAGTCAGAAACTCCTCATGTGGAAGCTGAACATTCAGAGAGTACTAAAGGTAGCGCTGCCGCAAATGCACTTTATTGTCAAGCTATGAAGCGTGTTACACACCATAATCAGCCAACAGTAAATGGAGAGACCCCTGCTGGTCTGCAGGACCAAAATATACCCACAAATCCTCACATAACATACCCAGACATGGTAGCCAGACAGTCTCCTGATGGGAGTTCCGTCTCAGCCGAGCCTCGAGTAACCGATGAACAAGCGAGCATTTGGAAAAGAAATAACATTTATGAAGCCCCAGTTCACTCTCGGGAATGGTTCAGTGTGGTTTCAGAGCTCACTCTGCGACTGCATAAAGGAAAAGCTGTTTCTGAATCAGCTGGAGATTCACCACCAGAACAACTGAAGGTGAACTCAGCTCACTCAGAGGTCATCTACGATGATGTGCCTTGTGAGAACAACTCTCCTCCAGATGCAGAGGATGATGTGATCTACGAGGAGGTGCAGAGGTCTGGCGAGTCCGGACTGATAGACAACGGCTGGGGTTCCAGTGAGTTTGAGAGTTACGACGAGCAGTCAGACAGCGAGACCAAGCAGCCCACCCGCAATAAGATTTCCCCCGATGTACGCCGTCTGAAGCAACGCTGCGTCCAGACCAAGCGTGAGCTAGCCATGCGGTTAGGTGCTCGAGATGTCAGCCAACTCAAACAAAACTATGACATTAAGGTTCAACAGCTAATGAAAGCAGCTAGGAATGGCACAAAAGATGGACTGGAAAAGACCAAAATAGCCATGATGCGCAAAGTGTCCTTCCTGAGTAAAAAAGACTGCACAGATAACACAGAGGATGATTCTGGATATCTGGATGTGACTGTATCTGAACTCAAACATCCACCACCTCAACTTTCTCCAATGCCAGAAGGACTCAGTAGCCAACAGGAATATAAGAAGCCTTTGATGGAGGCGGAGCCCCGGATCTTGAGCTTGAAGAAGATCCAGCCCATTTTTTATAGGCTGAAGGAGATCCTGCAGTGTCACTCCATGTTTCAGATTGCTCTGGCATCCCGTGTAGCAGAATGGGAAAACACTGAGAAAATCGGAGACCTCTTTGTTGCTTCATTTTCCAAGTCAATGGTGCTAGATGTGTACAGTGACTATGTCAACAACTTCACCAATGCTATGGCTCTTATCAAGAAAGCTTGTATGTCCAAGCCAGCATTCCTGGAGTTTCTCAAGAAGAAGCAGGCTGCCAGTACAGACAGAATCACTCTTTATGGCCTGATGGTCAAACCAATCCAACGCTTTCCTCAGTTCATACTCCTCCTGCAGGCTGTTTTTCAGGGACATTTGAGGAATGTTATATGCGGAGTGTTATATGGGTGTACAGTTGAAAATGAGCTGAAAAAGCTAAACTGGGACAATTACAGAAAGGACATGCTGAAAAACACCCCTGTAGGGCATCAGGACAGGCTGCCACTGCAGCTGGCCCTCACTGAGCTTGAGACTCTCGCCGAGAAGCTGAACGAGCAGAAACGACTGGCCGAGCAGCTCACCGAGATCCAACAGCTTGCTCGTAGCATTGGCGACCGCAACCTTAGTAAGCACCTGAACTCTGATCAGAAGCAGCTGATTCTGTCTGAGACATTGATTGAGACTGTCTATGGTGAGAAGGGACAAGTCCTCAAGTCTAAGGAGCGCAAAGTCTTCCTCCTGAATGACATGCTCGTCTGTGCAAACATCAATGTAAAATACATTGAAACAGGCATTGATAGCATCTTTGAGGAGCCAAGGGGCCCACCAGATATCAGCAGTCTAGTCCCCATCGGTCCAAAATACGCAGTTAAGTGGAGTGCCCCCCTGCTGCAAGTGCAAGTGGTGGAGGTGGGCCAGGAGACCCCCCAGCATAAAGACAGCATCTACCAGCAAAGTGGAAGCAAGCGCCTGAGCTCCACCAACTCTCAAGGAAAGCTGTTTCTGGGACCACCACGGCTGTACCAGGAACTGCAGGAGCTACAGCATGATCTTTCTGTGGTAGAGGAAGTCACGTTGTTGGTGGGCACCCTGCAGGGATCGTACCAGACAAAAAAAGTTGACCCATTCCTAGTCCCTATTGTGATGCTCTTTCGCTCTCTAACCTCTCTCTGCGCTAATTATGTTGCTAATGTCAAAAAGCAGGGTGCTAAGTGTAGTAACCGGTGCTTAGTCAGTCTGACAGCTGTCTCCCGTAAATGTGACTGTGTGCGTGAACAGAATCTCAACACTACGGTGGGGCAGGACTGGTGCATGGCTCTTCAGAGGCTCATCCGCATCAAAGAGGACGAGATCCAGTGTGCCAACAAGTGCCGTCTACGGCTGATGGTTCCTGGGAAGCCTGACAAATCTGGCCGTCCAGTCAGTTTCACAGTGGTCTTCAGTACGCCCAGTCCAATTAGCAAAATCTCCTGGGTCAATCGCCTGCATCTGGCCAAAATCGCCCTGAGAGAGGAGAACTTGCCTGGCTGGGTGTGTGTTGAGGATGATGAAAAGACTAAACCTCCATTCTGGTGCCCGTTGCTGGCCTGCCGTGTCCCTGTCTTTACCCCAAAATTGCAAGATCTGAAGTGCATATCCAGGAAGAGTGAGTTTGCAGCAAGTTTTGCACATCAGAGTGCTGAGCATCAGGCTCACAGCAGGAGAGGGACAGCGGCAGCCTGCGATTCCCACGCAAGATCCTCCTCAAACACAATAAGGACTGTTTCATCTAAACAGTTGCAGGCTGCCCTATATAACCCAGTCCACTGTGCTCTTCTCGGTTTTTCTGCCGCCAGCACATCCTTGCCTCAGGGCTACCTCTGGGTGGCTAGTGGGGGTGACGACTCCCATGGGCAGGTGGAGATTTTCTCACTTAACCGACCCACTCCACGCTCCGTGAAGAGTTTCTCTCTGGGTTCCCCGGTGCTTTGTCTGGAGTATATCCCAGAGCCCAGCACAGATGAAGAACTGGAGACACAGACCTCTGAAGTTACTTCCAAGATCGGCAACACCATCTGTGTAGGATTATTGGATGGCAATAACTCCGAGGGCTGCCCGGTTCTGTGCCTACAACACTCTGCCAACTTTCTTTTCGCCGGACTGAGTAATGGAAAAGTTGCCATTTACAACAGAAAGAGTGAAGAGGGGTTGTGGGATCCAGATTCCTGCAGACATGTGGTTATTGGATGTGCGCCCATCCTCAAGCTCCTCCGAATAGACGAGCATGTGTGGGCCAGCTGTGCCAACCAGGTCTCTGTGATTGAGGGCTCTTCTCTCAGAACTCAGAGTTTTGAAGTTCATCCAGACCCTATGGTTAGTGTGACCCACATGGTGCGCGCTGGAGGAGGGGTGTGGATGGCGTTTTCAGAGGGATCATCGCTACGTCTGTTTCACACAGAAACATTGGAACACCTCCAAGAGATCAACATTTCAACACCCTCTGCATATTTGAGCCCTGGCAAGTCCAACATCCTGCTCATCTGCCAAGGGCTGCTATGGGTGGGCACAGCTCAGGGCATTATTGTCACCCTGCCAGTGCCCAGACTGGAGGGCATCCCCAAAATAACAGGAAAAGGGATGACCTCACTCAACGCTCACAATGGCCCTGTTGAATTCTTGCTGGCCTCCTCCAGCATTTTATCCCAAGATTTCCTGAAGCGAGATTCTGCCGCGGAGGGTGTGGATTCAAATAATGGAGGTGAAGATAAGGAGGCGACAAATTCCTCTCAGGAGTCCCTCCAGCAGGCGGATGGCTCTCCTCAGGGAGAGACAAAAGCCAAAGGGGTGCTGCTGCAGTACCACCTCCGTTCTACCTCTCAGCTCCCAGGGAAACTCCTGACAGCCCTGCCCGAAGAATCATCCAACTCAACCCAGGAATCTCTGGAGCACACCCTAGAGGACGGCTCTATCTATGAGCTGAGTGATGACCCCGAGGTTTGGGTCAGAGGGCCTGGGCCCTCATCTAAGGAATCGGCACGTAGGGAGAAAGTGACTTCAGCCGCCGTTATATCTGGTGGAAAAGGGTTCCGTCGACTTGCTAACTCCTCTAACTCCCATGACTCCACTGAGAACACGCTCATGGTCTGGCAATTACCCATTACAGTTTGAGAAAGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06996957_07040074.mRNA True 4381 mRNA 0.50 30 6996957 7040081

Neighbor

gene id symbol gene type direction distance location
CI01000001_06981183_06981774 RPL22 coding upstream 15153 6981183 ~ 6981804 (+)
CI01000001_06960133_06963752 ICMT coding upstream 32527 6960133 ~ 6964430 (+)
CI01000001_06956478_06959048 NA coding upstream 37337 6955499 ~ 6959620 (+)
CI01000001_06948672_06949034 NA coding upstream 47923 6948586 ~ 6949034 (+)
CI01000001_06939316_06939879 NA coding upstream 56252 6939233 ~ 6940705 (+)
CI01000001_07045345_07052918 IGSF21B, IGSF21 coding downstream 5264 7045345 ~ 7052970 (+)
CI01000001_07056922_07065716 DHRS3, DHRS3A coding downstream 16841 7056922 ~ 7066543 (+)
CI01000001_07208833_07215412 NA coding downstream 168202 7208283 ~ 7215507 (+)
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding downstream 191477 7231558 ~ 7266902 (+)
CI01000001_07330166_07335508 GLUT1, GLUT1A, SLC2A1A, SLC2A1B coding downstream 290085 7330166 ~ 7336036 (+)
G16937 NA non-coding upstream 50806 6936142 ~ 6946151 (+)
CI01000001_06893068_06917387 IFFO2A non-coding upstream 78695 6893068 ~ 6917660 (+)
G16317 NA non-coding upstream 196576 6800168 ~ 6800381 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding upstream 264032 6717159 ~ 6747744 (+)
G16284 NA non-coding upstream 323446 6672182 ~ 6673511 (+)
G16977 NA non-coding downstream 51672 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 112013 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 239162 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 276583 7316664 ~ 7319030 (+)
G17061 NA non-coding downstream 283205 7323286 ~ 7323615 (+)
G15995 NA other upstream 1282006 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1707001 5279837 ~ 5287698 (+)
G15794 NA other upstream 1932253 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3375506 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5325953 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 492491 7531541 ~ 7540586 (+)
G17234 NA other downstream 992043 8032124 ~ 8032483 (+)
G17353 NA other downstream 2175941 9216022 ~ 9228859 (+)
G17354 NA other downstream 2194382 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2378247 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding CM030136.1 CM030136.1 5804842 ~ 5827525 (-)