CI01000001_06893068_06917387 (IFFO2A)


Basic Information

Item Value
gene id CI01000001_06893068_06917387
gene name IFFO2A
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6893068 ~ 6917660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06893068_06917387.mRNA
ATGGATTTATCACGTCGTTTTCAAGACCCGGTTCTCAACCCGATATTGTTCAATGAATCCGCTGCGCCTCTCGCTATGAATGAAGCGTGTGAGATTGGGAGCGGGTCCGGCGCCATGGCAACCAGCGCGTTGAGAAACGACTTGGGCTCCAACATTCATGTGTTAAAAACACTTAATCTCCGCTTCCGCTGCTTCCTTTCCAAAGTCCACGAATTAGAGCGCAGAAATAAATTATTGGAGATCCAGCTGCAGCACGTCCAGGAGCAATCCCGGTACCGACTGCTGTTTTCACGGGAGAAAGCGGTCCAGACGAACTTCGAGCTGCCTTATTCAAACACACTGTGTCAATCGAGACTCCCCGGTCAAATCTGGAGTTTCTCACACACCGCCCGATACGGAGGACGGTACGAGACTCCTCAGGGGCCTGGAGTGTCCTGGACTCAGCCAGACGGTGTCGGGGTTCAGACTGACACCATCACACCTGAACTCAGGGCCTTGTACAATGTTTTGGCCAAAGTCAAGCGCGACAGAGACGAGTACAGAAGAAAACTTTTTGATGTGTCATTCAATTCACTGGCTGATTCAACCATTTATTTTTGTCATGGATGCAGTTCATTAAAAAGTTCTTGGCCAGGTCAGCTTAACATAAGTATAACTCTTTGTACTAAACACATGATCGCTTCTGGTTCTTGTCATGTTGAGTCAGCACTTGCCCCCTCTTGGCAGGGTGTCTTGATGTCTGGACCCAGTCAGACTGACTCTCAATGCAAGTGCAATATAAATGGAGTCCATAATCCCTTGAGCATATGGGAGGAGGAGGTGTCCAAACGTGAGCAAATGGAGTCTTTGGTGGAGACCTTACAAGAGAGTGTCCAGTCGTCTGAAGCTGTGCAAGGAGAACTGAGTGAAAAGATGGAACGTCTTAGAACAGAGCTGGTGGTCTTCAAGAGCCTCATGCCTCATGATGACGTGTCTGACTTGGACACTAAAATCCAGGAGAAAGCCATGAAGGTTGATATGGACATCTGCAGACGCATCGACATTACAGCCAAGCTGTGTGACGTGGCACAGCAGAGGAACTCAGAAGACATGAGCAAGATATTGCACGGCAGCCCATCCAGAGCTCCTCCCGAACAGAAAGGGGGGATGACAGTGTGTAGGAGGAAGGAGTATAAGGGTGAGTCAGAGGAGCAGAGAATGGAGACTGATGTTGATTCTGCTCACTGTGAGGACATGCCTGGTTCTCTCAATATCACAGATGAGATGAAGAGGATGCTCAACCAGCTGCGGGAAACGTTCGAGTTTGACGATGACTGTGATAGTCTGGCGTGGGAGGAGACGGAGGAGACTCTTTTGCTCTGGGAGGATTTCAGTAACTACAACAGTGTGAACCTCACCACCACCGCCGCTGCTGGCACAGTCAACACAGTGTCCTGCACATCTGACACTCACGGAGAGACCCACGAGCAGGATCGAAGTCTAGGTAGCCTCATAAATGAAACAGAGTCCCTCTTTAAGACCAGAGAGCAGGAGTACCAGGACACCATCGGACAGATTGAGCTGGAACTGGCCACGGCTAAGAATGACATGAACAGACACCTTCATGAGTACATGGAGATGTGCAGTATGAAGAGAGGGCTAGACGTACAGATGGAGACCTGCCGGAGGCTCATCCAAAGCACAGCCACCACTGGCAGACAATCACCCTCCTTCAGCTCTGTGGCCAGCAGTGATTCAGGAAACACTGATGACATCCAGGATGAGCTGGAACATGATGGAGTAAAAGATGGAGAGAAAGAAGGGGCAGTAGAGATGAATGGAGAAAAAAAGAAAATGTCACAAGACAATGGGTTGAACAGAGCGTGCAGAGACAAATTCTACATTTCTCAGAAAATGTATGAAGCCTTTTAGAAGAACTACATGGTAATTTCA

Function

symbol description
iffo2a Predicted to be located in intermediate filament. Orthologous to human IFFO2 (intermediate filament family orphan 2).

GO:

id name namespace
GO:0005882 intermediate filament cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06893068_06917387.mRNA False 1932 mRNA 0.49 13 6893068 6917408

Neighbor

gene id symbol gene type direction distance location
CI01000001_06884020_06889266 UBR4 coding upstream 3076 6884020 ~ 6889992 (+)
CI01000001_06825263_06835397 EMC1 coding upstream 56605 6825263 ~ 6836463 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding upstream 145324 6717159 ~ 6747744 (+)
CI01000001_06700913_06706131 NA coding upstream 186645 6700811 ~ 6706423 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding upstream 251703 6583486 ~ 6641365 (+)
CI01000001_06921000_06929478 TAS1R1 coding downstream 3592 6921000 ~ 6930359 (+)
CI01000001_06939316_06939879 NA coding downstream 21825 6939233 ~ 6940705 (+)
CI01000001_06948672_06949034 NA coding downstream 31178 6948586 ~ 6949034 (+)
CI01000001_06956478_06959048 NA coding downstream 38091 6955499 ~ 6959620 (+)
CI01000001_06960133_06963752 ICMT coding downstream 42725 6960133 ~ 6964430 (+)
G16317 NA non-coding upstream 92687 6800168 ~ 6800381 (+)
G16284 NA non-coding upstream 219557 6672182 ~ 6673511 (+)
G16257 NA non-coding upstream 377670 6515121 ~ 6515398 (+)
G16247 NA non-coding upstream 459740 6433084 ~ 6433328 (+)
G16937 NA non-coding downstream 18734 6936142 ~ 6946151 (+)
G16977 NA non-coding downstream 174345 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 234686 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 361835 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 399256 7316664 ~ 7319030 (+)
G15995 NA other upstream 1178117 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1603112 5279837 ~ 5287698 (+)
G15794 NA other upstream 1828364 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3271617 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5222064 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 615164 7531541 ~ 7540586 (+)
G17234 NA other downstream 1114716 8032124 ~ 8032483 (+)
G17353 NA other downstream 2298614 9216022 ~ 9228859 (+)
G17354 NA other downstream 2317055 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2500920 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location