CI01000001_06921000_06929478 (TAS1R1)


Basic Information

Item Value
gene id CI01000001_06921000_06929478
gene name TAS1R1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6921000 ~ 6930359 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06921000_06929478.mRNA
CTTTAGTGACAGTGGAGGGCTTCACCTTCAAGGAGATTATATCATCTCTGGCTGGTTCCCTCTCCATAATTCAGAGTCCACCATCCCGTCGACACCTTACCTGACTGACTGCACAAAAGGCTTGACCAACAAGCATGGCTATCATTTGGTGCAGGCCTTCAGATATGCTGTGGACGAAATTAACAACAGCACCCAGGATAAGCAACTCCTTCCAGGGGTCACGCTGGGCTATCAGACATATGACTTATGCTCCCTCCCAGCCAGCAATCTGGCCACCCTGGATCTGCTGACCCAGCAGCTCCACAGTTCAGTTGTGACCAGCCGCTCTGTGGCCATCATCGGTCCTGACAGTAGTTCCTACTCTTTCACGCCAGCCGCTGCTCTTGGTGCATTCCTGGTGCCTCAGATCTCCTACGAGGCCACAAATGAACTGCTGAGCAACAAAATTCTCTATCCAGCTTTCTTCCGCACCATTCCCAGTGACAAGAACCAAGTCAGCGCAATGATACAGATTCTGGTCAGATTTAACTGGACCTGGATTGCCCTTCTCGGAAGTGACAATTCCTACGGTATACAAGGAATGCAAGGCCTTTCCCAGCAAGCTTCACTTCACAATTTATGTATTGCATACCAAGCGGTGATACCTGCAGTAACTGACAAAACAAAGCAATACATGCAAGACATGGTCAAAAGCATCATCAAAACCAAAGTCAACACTATAGTTGTCTTTGCCAATAAGAGGCGGGCCGCAGGCTTCTTTCCTTTTGTTATTGACCAAAACGTGACAGGTAAAGTGTGGATTGGGACAGAGGACTGGTCGGTGGCGTCAACAGTGAGTAGTATCCCAGGGATCAGTACGATAGGGACTGTCCTCGGTGTCGCAGTCAAATATGCTGAATTCAGTGGGTATGAAGATTTTGAAAGGCTTTCTGTGCCTGGACTTAAAGACATTGGTCTAAACAGTCCATTCAACCTCAGCGTCCCATGTATGCAAAATACAGACCTTTATGAAATAGCAATTAATGGCTTTTCTTTGTCGCAGTATGACATTGTTTCCTCCTTTAACGTGTATAAGGCCGTGTACGCAGTGGCTCATGCGCTGCACAACATCCTGCATTGTGACTCTGGACTATGTCAGAAATATAAGGTGCAGCCATGGGAGGTATTTCACCAGCTGAAACGAGTTCAGTTTTCAATTCGAAACACATCATTTTATTTTGATGAGAATGGAGACCCTCCTACAGGTTACGATATTGTGACATGGGTATGGACGGATGGCCAGTGGTCATTGAAAGTGGTGGGAAGTTACAGTCCTAGTCCAACTGATCTTCAGTTAGACGCCTCTCAGATTCAATGGACAGGCCAGTTGTCTTCTGTAACCAAGGTTCCTGAGTCGCTGTGTTCTCCAGAGTGTCCCTACGGACACAGAAAGCTCATGACCGGACAGCATAAGTGTTGCTTTGACTGCATGGCATGCCCTGCCGCCACCTTCCTCAACAAATCTGGATACACTAGCTGCCAAGCATGTGCCAAAGATTACTGGTCTGAAGCAGAGAGTGAGACATGTAAGAAGAGGGCAGAGCTGTACCTGTCGTGGGGCACTCCGCTCACTACAGCCCTGCTCATATACCTGGGTGTGACCCTGTTTCTCACCCTGGGCACAGCTCTCATCTTCCTGTTTAACCTCAGTACCCCTGTGGTGAAGTCGGCCGGAGGGAAGACCTGTCTGCTGATGTTGGCGTCTCTGACCGTGGCCTCCTGCAGCACACTGTGCCACTTCAGCAGACCGTCCCGCATCGGCTGCCTCCTCAAACAGCCGCTCTTCATCATCAGCTTCACCGTGTGCCTGGCGTGTGTGACTGTGCGCTCTTTTCAGGTGGTTTGTATATTTAAATGGTCCTCCAAGCTGCCAAGATTCTATGAGACCTGGGCTAGGAAGCGAGGCCCTGAGATGTTCATCCTCATCATGACAGTGGTGGAGGTCTTAATCTCTCTTCTTCGCATGCTTCTCGACCCTCCCTTTCCATCTCAGGATTATGACTTCTACCATGACAGCATTATTCTGGAGTGCAGTAAGACTCTGTCTCTCGGGGCCTTCGCCGAGCTCATTTTTGTGTGCGTGTTGAGCTTAATTTGTTTCTGCCTGAGCTACATGGGAAAAGATCTGCCTGCCAATTACAATGAGGCTAAATGCATTACATTTAGTCTCATGATATATATGATTTCTTGGATCACTTTCTTTACAGCTTACTGCATTTCCAGAGGGAGCTTCGCCATGACCCTAAATGTAGGCGCCATCCTTTTTAGTGTGCTAGGGATACTCGGCGGCTACTTTTTGCCGAAGACTGTGACTGCTTGGCATATGCGTAGCCAGTGGGCAGATCGTCAGAGAAAGCCTAATTGTGTTGGCTACCAAACGGGCAGAGCAAACGGTTCGGCTGCCTTGCGTGAACATCTGTTATGTGCTCCGTTCTCATGGGTGCCCAGTTTCACTCGAAACAATTCTGAGAAAAGATTTAATTGGGCAGCTAATTTTGAAGATAAGAGGACAGATGGCGTCACTTGTCCGGTTTGTCTTTAGTAAATCGTAATGCCCGAAATTGTAAAGTTTTCAGTAAATATATTCAAAAATATAGGATAAATATGGGAAAACTGGTAACACTTTACAATAAGTCCCATCAGTTAGACACCAATACTTTTTTTTTTTTTTTAGAGAATTTATTAATCGTTGTTAAAGTTAGTTTTTAAAAATGCAACTGTTTATTGTTAATTCAAGTTCATTTGGTTCCATTAAATATTATTGAAGTCCGCATGAAACAGAATTTGCAATAGTCTTTACATATCTGAGTGAAACAGCTTTTCAAACAAGAAAAAATGTAGGGCAGGACTTGATTTTGTCTATCAGAAATTGATTGGATCGTTACAGTTTAGAACAATTTGTCCCGCCCTCACACGAGTAAACGTCATTAGAAAAGAGAAGAGATAGCATTGTAAGTGGGAGGAGAAGTTTTTAGAGTAAAGATTATATGGGTGCACAATGATGTGCATCGATAAATCATTTATAATAGTGCGATATTCCATAAAAAGAACAGGAATTGTACATTTTGATTTCATTCTGACTTTAACAGATACAATTATTAATTTTAACAATTAACAATTGTTTTACAATTTTAACAATTGTTTCTCAGGTTTTGTGTTGTGGGACTTTTATTTTGAAGTGTGTTTTATGCTCAGCTTGTTTCAGTGTTTCATCCCTGTGATTTGTTCCTGTTTCCTTTGTTTCCATTACTAAAATTAGTTAAAATTGAATATATTTGAATATGAAAGATTTATGAAAGAACCTTATTGTAAAGTGTTACCGGAAAACTCAGTTGTCAGTGTGTGTGCTGTGAGCATAAGGTCCAAAAGCCTGAGACCATAGTGATAGTTTTACTATATAACCAGAGTAGAACTGATTTGAAA

Function

symbol description
tas1r1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill raker; mouth; and pharynx. Orthologous to human TAS1R1 (taste 1 receptor member 1).

NR:

description
Taste receptor, type 1, member 1

GO:

id name namespace
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
K04624 TAS1R1; taste receptor type 1 member 1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06921000_06929478.mRNA True 3462 mRNA 0.44 8 6921000 6930359

Neighbor

gene id symbol gene type direction distance location
CI01000001_06893068_06917387 IFFO2A coding upstream 3592 6893068 ~ 6917660 (+)
CI01000001_06884020_06889266 UBR4 coding upstream 31008 6884020 ~ 6889992 (+)
CI01000001_06825263_06835397 EMC1 coding upstream 84537 6825263 ~ 6836463 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding upstream 173256 6717159 ~ 6747744 (+)
CI01000001_06700913_06706131 NA coding upstream 214577 6700811 ~ 6706423 (+)
CI01000001_06939316_06939879 NA coding downstream 8874 6939233 ~ 6940705 (+)
CI01000001_06948672_06949034 NA coding downstream 18227 6948586 ~ 6949034 (+)
CI01000001_06956478_06959048 NA coding downstream 25140 6955499 ~ 6959620 (+)
CI01000001_06960133_06963752 ICMT coding downstream 29774 6960133 ~ 6964430 (+)
CI01000001_06981183_06981774 RPL22 coding downstream 50824 6981183 ~ 6981804 (+)
G16317 NA non-coding upstream 120619 6800168 ~ 6800381 (+)
G16284 NA non-coding upstream 247489 6672182 ~ 6673511 (+)
G16257 NA non-coding upstream 405602 6515121 ~ 6515398 (+)
G16937 NA non-coding downstream 5783 6936142 ~ 6946151 (+)
G16977 NA non-coding downstream 161394 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 221735 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 348884 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 386305 7316664 ~ 7319030 (+)
G15995 NA other upstream 1206049 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1631044 5279837 ~ 5287698 (+)
G15794 NA other upstream 1856296 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3299549 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5249996 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 602213 7531541 ~ 7540586 (+)
G17234 NA other downstream 1101765 8032124 ~ 8032483 (+)
G17353 NA other downstream 2285663 9216022 ~ 9228859 (+)
G17354 NA other downstream 2304104 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2487969 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021649 tas1r1 coding NC_007134.7 CM002907.2 21424747 ~ 21440054 (+)