CI01000001_06825263_06835397 (EMC1)


Basic Information

Item Value
gene id CI01000001_06825263_06835397
gene name EMC1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6825263 ~ 6836463 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06825263_06835397.mRNA
ATGGCTTGGCTTGTACTTAGATTAGCAATATCTGTGTCTTTATTATATACTGCATCGGCGGTATTTGAAGACCAAGTTGGAAAGTTTGATTGGAGGCAACAGTTCATCGGCAAGGTGCGTTTTGCCTTGTTTGACACTCATTCTCAAGCGTCTAAAAAGCTCCTGGTGGCAACTGACAATAACGTGTTTGCTTCACTCAATTCAAGGACTGGAGACCTGTTCTGGCGTCATGTGGATAAAACTGGACCAGAGGGCCATATTGATGCACTGCTTATGTATGGACAGGGTAAGCATGTGGTGAAACGTGTGTATTGTGAAATTGGGCTTTGTTTTTGCCTCTTAAACGGTTCTTGTCTCTTAGACGCTGTTGTTGTTGTCGGGAATGGCCGCCTGCTTCGCTCCTGGGAGACCACAGTCGGTGGTTTGAAGTGGGAGGCAGTGCTTGATACTGGAAGCTTTCAGGCCGCTGCCTTAGTTGGAGTTCAAGACTTTGTGAAGTATGTTGCTGTGCTGAAACAATCAGCAATCTCTCTCCATGACCTTTCAAGTGGCAATCAGATATGGGTGGAAAACCTACCTGACAGTGACACTGTTCAGTATCAAACTATTTATTCTGGTGGGAACGGACTGGTGTTTGTTTTGGGATTTGTGCCGAACTCCCATATTGTTATTGTTGAATACAAAATTGAAGATGGAGAAATCATGAAGAAGAAATCAGTTGAAGCTGCATGGATGTCAAGCCTGGAGAACAGCTGTGCTGTCATCAGCTCAGGGATCCTACTGTGTGTGGATCAGATCACACAGTCCCTGTACACTCTACCACTGCAGTCTGCAGAACAGACAGAAATGAGACAGATCCACCTACAGACACTAGACTTGGAGGTGGCGTCTGGATTCCAGCCTGTTCTGACGTCCACTCAGCCCAATCCGGCACAACCTCCTCTCGCTGAGTTCTTCCTGCAGCTCAGTCCAGATCATCACATCCTGCTGCAGCTCAAAGATGGCCTCATCGCTCCGCTCCGGGACTTCAATCCATCATATTTGGCTGCTTTTGCTACATCTGGAGAGAAGACAGTTGCTGCTGTGATGTCCCCAAAAAATGATACTGCTTGCAGTATCAACCTATTCAGTGCTGACACAGGGCGGAGGCACCTTGACACCACCATTATCTACCACATGGACCCTAATGGAGGAAAGCCAAACAGATTATATGTCCATGCCTTTCTGAAGAAAGATGACTCTGTGGGCTACAGAGTCATGGTGCAGACGGAAGACCTTACACTCACATTTCTACAGCAACCTGGCAGGGTAGTCTGGATGAGGGAGGAGGCCCTGGCTGATGTGGTCACCATGGAGATGGTTGATCTGCCACTCACTGGAACACAGGCAGAGCTGGAGGGAGAGTTTGGAAAGAAAGCTGATGGGCTGTTACCCATGGTTCTCAAGCGCCTCTCTTCCCAGTTTATCCTGCTGCAGGCCTGGATGGCCCACCTCTGGAAACTCTTCTACGATGCCCGGAAGCCTCGTAGCAGTGTGAAGAATGAGGTCACCATAGACACACTTTCTCGGGATGAGTTTAACCTGCAGAAGATGATGGTGATGGTAACTGCCTCTGGAAAGCTCTTTGGCATCGACAGTAAATCAGGAACCATTTTGTGGAAACAGTATTTACAAGACATCCAGCCCAACTCCATTTTTAAGCTCATTGTGCAAAGGACCACTGCCCATTTTCCACATCCTCCACAGTGCACACTTCTTATAAAAGACAAGGACACAGGTCTTGGAAGTCTATATGTCTTCAATCCTATCTTCGGCAAGAAGAGTCATATTAGCGTCCCTGCTTTACCCCGACCTGTGCTTCAAACCCTGCTGCTACCTGTCATCGACCAGGACTACGCTAAAGTCCTTCTACTTATTGACGATCAGTACAAGGTCACAGCATTCCCATCTACTAAGAATGTTCTACAACAACTTCAAGACACAGCATCCTCCATATTCTTCTACCTAGTGGACAGCAGTCAGGGAAAGCTGTCAGGTTTTCGTCTGCGCATGGATTTGTCTACAGAGCTGATCTGGGAGGTGGTCATCCCTACTGAAGTGCAGAAAATAGTAGCTGTCAAAGGAAAGCGTGCAAATGAACATGTGCATTCCCAGGGCAGAGTGATGGGGGATCGTAGCGTGCTCTACAAGTATCTGAACCCTAATCTCTTGGCTGTGATAACGGAAAGCACAGACACTCATCAGGAGCGCAGCTTTGTTGGAATCTTCCTGATTGATGGTGTGACTGGCCGTATTGTTCATGAGGCGGTGCAGCGGAAGGCCAGAGGTCCCGTTCACTTTGTGCACTCTGAAAACTGGGTGGTGTATGTGTACTGGAACTCCAAATTTCGTAGAAATGAGTTTTCTGTGTTGGAGCTCTTTGAGGGAGCAGAGCTTTATAACAGCACAGTGTTCAGCTCCCTGGACAGACCACATCCACCTCAGGTGCTGCAGCAGTCCTACATCTTTCCTGCTCCCATAAGCACTTTGGAGGCCACACTTACAGAAAAAGGCATCACCAGCCGACACCTTCTTGTGGGGCTGCCATCAGGCAACATTTTATCCTTACCAAAGATGTTTCTGGACCCGCGGAGACCAGAGGTGGTCTCGGAACAGAGTCGGGAGGAAAACCTCATACCATATGCTCCAGAAATGCCCATTCGTACAGAGTGGTTTATAAATTACAACCAAACTGTGTCAAGAGTAAGAGGCATCTACACTGCCCCCTCTGGCCTGGAGTCTACCTGTTTGGTGGTTGCGTATGGTCTTGACATCTACCAGACCAGAGTGTTCCCCTCCAAGCAATTTGATGTCCTTAAGGATGACTATGACTATGTATTAATCAGCAGTGTACTCTTTGGCCTCTTCTTTGCCACCATGATCAGCAAACGTCTAGCAGAAGTGAAACTGCTGAACAGGGCATGGCGATAAGACTCACCCTAATGGCCAGTTGACTTCACTCTCGCCCTCACTGCAATGTGGTTGACACATTGATGGCAGGAGACTAGCTGGTGACCGTGTCAAAACTGCAAGATCATTTGATAAGTTTGGTGTATTTTTGCAACCAGCTATCTTGGGGATCTTGTGGTGTCTTGAGTGTAAGTGCATAGATGGCCATGATAGTTTTTCCCTTTTCAGAGAGACATAATGATGTAGTTTTTTTGTTTGTTTGTTTTTCCCCAGCATTGAACAATACACTGTCTAATTTGTTAATTTATTGTGCCTTTCGGGGTAACAACTCATGTGATTTAAAGGTAGACTTGCCATGTATAACAAAATAACTGTCTTGTTTATTATTTTTTCCATTCTAGATTTCATTCAGTAAGTCTGAGTCTGCCTTTTGAAGAGGCTGAAGGATGAGTTAATGTATTTTCAAATTTAATATTGACTGCCATTTTATTTAAATTAATGAAAAGGACTGAATGGTGTTATTTGGTTTTAAACAAATTAAAGTAATAGTAATATGATCTGATGAGCTGTTAAAGAATATATTGCCTCATTTCATGTACAGGATTTGAATGGACAAGCACTAGTGCACATGAGAACTGTGAAATTTCAAGAGTGAAGACATTTGGATCATTTTCTCCTGTACATTAATGATAGAAGGTTCTGCATAGGAGGAGTTTGGATAGTTTTTTGTAGTTATTTTATGGTATGTCAAATGCACTGGATAGTTTGGAGCCATGTTCTTACTTGATATATTTATGGGCAAGATCCTATTATGCCATATCACACTTTGATTTTGACTCATACACATGCAAATCCTTGTGGTTTTACTATTGTGCAGAATGTTTCTACTCTTTTGATTTTCATAAATAGGCCTGTTTATATACATAATTTTGAAAGCATCCCCTCTGCTGCAAATTAATGATGTCAGAAAAAAAAATAGTTTAATAATATTTATAACAAAAGGATAGATATTCAGTTAAGTTGGTAACAAACCTAATGCTTTTTTTTTAAACATGCATAAATTATTTGTTCTTTTCCCCAATCAGTA

Function

symbol description
emc1 Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of EMC complex. Orthologous to human EMC1 (ER membrane protein complex subunit 1).

GO:

id name namespace
GO:0034975 protein folding in endoplasmic reticulum biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06825263_06835397.mRNA True 4036 mRNA 0.44 21 6825263 6836463

Neighbor

gene id symbol gene type direction distance location
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding upstream 77519 6717159 ~ 6747744 (+)
CI01000001_06700913_06706131 NA coding upstream 118840 6700811 ~ 6706423 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding upstream 183898 6583486 ~ 6641365 (+)
CI01000001_06564886_06568295 NA coding upstream 256968 6564886 ~ 6568295 (+)
CI01000001_06541966_06547403 NA coding upstream 277518 6541966 ~ 6547745 (+)
CI01000001_06884020_06889266 UBR4 coding downstream 47557 6884020 ~ 6889992 (+)
CI01000001_06893068_06917387 IFFO2A coding downstream 56605 6893068 ~ 6917660 (+)
CI01000001_06921000_06929478 TAS1R1 coding downstream 84537 6921000 ~ 6930359 (+)
CI01000001_06939316_06939879 NA coding downstream 102770 6939233 ~ 6940705 (+)
CI01000001_06948672_06949034 NA coding downstream 112123 6948586 ~ 6949034 (+)
G16317 NA non-coding upstream 24882 6800168 ~ 6800381 (+)
G16284 NA non-coding upstream 151752 6672182 ~ 6673511 (+)
G16257 NA non-coding upstream 309865 6515121 ~ 6515398 (+)
G16247 NA non-coding upstream 391935 6433084 ~ 6433328 (+)
G16937 NA non-coding downstream 99679 6936142 ~ 6946151 (+)
G16977 NA non-coding downstream 255290 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 315631 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 442780 7279243 ~ 7284904 (+)
G15995 NA other upstream 1110312 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1535307 5279837 ~ 5287698 (+)
G15794 NA other upstream 1760559 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3203812 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5154259 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 696109 7531541 ~ 7540586 (+)
G17234 NA other downstream 1195661 8032124 ~ 8032483 (+)
G17353 NA other downstream 2379559 9216022 ~ 9228859 (+)
G17354 NA other downstream 2398000 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2581865 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location