CI01000001_06884020_06889266 (UBR4)


Basic Information

Item Value
gene id CI01000001_06884020_06889266
gene name UBR4
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6884020 ~ 6889992 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06884020_06889266.mRNA
GCATTGGTGGCAGAGCAGGAGAGCAAGGACAGTGGAGGAGCATCCATAGCAGAGCAGGTTCTTAGTATTATGGAGATCATCCTGGACGAGGCAAATGCTGAGACTGTGTCTGAAGACAAGGGTAACCTGCTGCTGACAGGTGATAAGGACCAGCTGGTGATGCTCCTGGACCAGATCAACACGTTGTTTGTGCGTTCAAATCCCAGTGTCCTACAAGGGCTGCTCCGCATCATCCCTTACCTGTCCTTTGGTGAACTAGAGAAGATGCACATCCTGGTCGAGCGCTTTAAACCCTGCTGCAACTTTGATAAGTATGATGAGGAGCACAGTGCAGATGATAAGGTGTTCCTGGACTGCTTCTGTAAAATAGCTGCAGGAATCAAGAACAATAGTAATGGCCATCAACTGAAAGACCTCATCTTACAGAAGGGCATTACCCAGAGTGCTCTGGACTATATGAAGAAACATATCCCCTGTGCTAAGAAGTATGAAATCCTGGATGCAGACGTTTGGAAGAAATTCCTTGCTCGACCAGCCCTTCCGTTCATCCTTAGACTGCTGCGTGGTCTGGCCACCCAACACCCCCCTACACAGATGCTAATCGGAACAGATTCAATAACCAATTTGCACAAGCTGGAGCAGGTGTCCAGTGACGAGGGTATCGGCACTTTAGCAGAGAATCTTCTGGAGGCTCTAAGGGAGCACGCCGAGGTTAACCTGAAGATCGATGCTGCTCGAAGGGAGACTCGAGCTGAGAAGAAACGCATGGCCATGGCAATGAGGCAAAAAGCTCTCGGCACGCTGGGAATGACAACCAATGAGAAGGGTCAGGTGGTGACTAAGACATCCCTGCTTAAACAGATGGAGGAGCTCATAGAAGAACCTGGGTTGACTTGCTGTATTTGTAGAGAGGGCTATAAGTTCCAGCCTACCAAAGTTCTGGGCATCTACACATTTACGAAGCGTGTGGCCCTTGAGGAGTTTGAGAACAAACCCCGCAAGCAGCAGGGTTACAGCACTGTCTCACACTTTAACATAGTCCACTATGACTGTCACCTTGCTGCTGTCAGGCTTGCCAGAGGGCGTGAGGAATGGGAAAGTGCGGCACTACAGAATGCCAACACAAAGTGCAATGGGCTCCTACCAGTATGGGGGCCACACGTACCCGAATCTGCCTTTGCCACCTGCCTGGCAAGGCACAACACATATCTGCAAGAGTGCACAGGGCAAAGGGAACCCACATACCAGCTCAACATTCATGATACCAAGCTGCTGTTCCTGCGCTTTGCAATGGAGCAATCCTTTAGCGTGGACACAGGGGGAGGAGGCCGCGAAAGCAACATCCACCTCATCCCTTACATCATTCACACAGTTCTTTACGTCCTCAACACAACAAGGGCCACGTCACGAGAGGAGAAGAATCTACAGAGCTTCTTGGAGCAGCCTTGTGAGAAGTGGGTGGAGACTTCGTACGAGGTGGACGGGCCACATTATTTCACTATATTGGCCATGCACATCCTCCCACCCGAGCGCTGGAGGACTACTCGTATTGACTTCCTGCGTAGGCTGCTGGTCACCTCTCATGCCCGCAAGGTCTCAGCAGGGGGTGCTAACAAGCTCACTGACAAAGCAGTGAAGGAGTATGCCGTTTACCGCTCACCGCTTCTCTTCTGGGGTCTGGTGGATCTTATCTATGATATGTTCAGGAAAGTGCCCACCAGCAACACAGAAGGAGGCTGGTCCTTCTCACTCGCAGAGTACATAAGGCACAATGACATGCCTATCTATGAGGCTTCAGAAAGGGTGTTGAGGTCTTTTCAGGATGAACTCATGCCTGCTGAATCCTTCTCAGAGTTCCTGGATGTCGTAGGGCTTCTGTCAGAAATCCCAGACCCTGACGCCTTCCTGCAGGACCTGTTGAACTCTGTGCCCTGATGGCACACATTTATGCACCTCACTTTATGGACTCGTGACCGCTCTGTCCAGTGCAGGTGTTCCTTAAACATGGAGTCTGTCCGCTACCCGGACCCAGCTATTCGCAACTCCAAAAGGACACCTTTCAATCGGGGCTCAGGCTCCCAAAACTTCTATCAGCTCGCATACACACTCATTCACCTCCACTTCTGCTCCTGATCTCCGCGTGGGTTCATTCAGTTATAACTCTCTTCTAAACAAGTGACGAGTAGCCTGACGAGTTAATGCGCATTTATTCTACAATGGTTTTGTAACACCTAATACACATAAACACACCGTTCTGTTTTGATCTGAAATGTTGCAGGTAGTCTGGTTGGGAATTATTTCATAAACAACCTTGATGGCATTTCTTTTTCCCTTTGTGATTTTGTTTGTTTTTTTGACTCAAGATCTAAATTGGCTAAGAGTTACAGATTCACTCAAATGTGAACTAATCTCTCATTGTCTTTTTATGTTTTTGGACCTTTTTTGCAGTGGTGTTCTATGAATTGTTTGCAGTTTGTAAGAAAGGCAAGGCCTGACACTGGTTCTGTGATGCGACGCAAATGTGTGATGATTGTTTTCCATGTGTAAATGGTTAAAGAGTGAGATGAAAGCTTGTTTAATGTGTTATTCCCGTGAAATGGAAATACTTTGATTTGTAAAGGGTTTACCTGCATCAACAATGAAACACAAAGATAAAAGATA

Function

symbol description
ubr4 Predicted to enable ubiquitin-protein transferase activity. Predicted to be involved in ubiquitin-dependent protein catabolic process. Predicted to be active in centrosome; cytosol; and nucleoplasm. Orthologous to human UBR4 (ubiquitin protein ligase E3 component n-recognin 4).

GO:

id name namespace
GO:0008270 zinc ion binding molecular_function

KEGG:

id description
K10691 UBR4, ZUBR1; E3 ubiquitin-protein ligase UBR4

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06884020_06889266.mRNA True 2661 mRNA 0.48 13 6884020 6889992

Neighbor

gene id symbol gene type direction distance location
CI01000001_06825263_06835397 EMC1 coding upstream 47557 6825263 ~ 6836463 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding upstream 136276 6717159 ~ 6747744 (+)
CI01000001_06700913_06706131 NA coding upstream 177597 6700811 ~ 6706423 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding upstream 242655 6583486 ~ 6641365 (+)
CI01000001_06564886_06568295 NA coding upstream 315725 6564886 ~ 6568295 (+)
CI01000001_06893068_06917387 IFFO2A coding downstream 3076 6893068 ~ 6917660 (+)
CI01000001_06921000_06929478 TAS1R1 coding downstream 31008 6921000 ~ 6930359 (+)
CI01000001_06939316_06939879 NA coding downstream 49241 6939233 ~ 6940705 (+)
CI01000001_06948672_06949034 NA coding downstream 58594 6948586 ~ 6949034 (+)
CI01000001_06956478_06959048 NA coding downstream 65507 6955499 ~ 6959620 (+)
G16317 NA non-coding upstream 83639 6800168 ~ 6800381 (+)
G16284 NA non-coding upstream 210509 6672182 ~ 6673511 (+)
G16257 NA non-coding upstream 368622 6515121 ~ 6515398 (+)
G16247 NA non-coding upstream 450692 6433084 ~ 6433328 (+)
G16937 NA non-coding downstream 46150 6936142 ~ 6946151 (+)
G16977 NA non-coding downstream 201761 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 262102 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 389251 7279243 ~ 7284904 (+)
G15995 NA other upstream 1169069 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1594064 5279837 ~ 5287698 (+)
G15794 NA other upstream 1819316 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3262569 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5213016 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 642580 7531541 ~ 7540586 (+)
G17234 NA other downstream 1142132 8032124 ~ 8032483 (+)
G17353 NA other downstream 2326030 9216022 ~ 9228859 (+)
G17354 NA other downstream 2344471 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2528336 9435836 ~ 9436373 (+)

Expression


Co-expression Network