XLOC_021649 (tas1r1)


Basic Information

Item Value
gene id XLOC_021649
gene name tas1r1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21424747 ~ 21440054 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042971
ATGGGAACGATGTTGAGCAATTTTGTGTTTCTCTGTCTCTTGAGATTCAGTGACAGCACAGGTCTCCACCTTCAAGGAGATTATATCCTCTCTGGCTGGTTTGCTCTGCATAATTCAGATTCCACCATCCCACCAACTCCTTACCTGAATGACTGCAAGAAagGTTTGACCAACAAGCATGGCTATCATCTGGTGCAGGCCTTCAGATATGCCGTAGACGAAATTAACAACGGCACCCAGGACAAGCAGCTCCTTCCTGGGGTCACACTGGGCTACCGGACATATGACATATGCTCTCTCCCAGCCAGCAATCTGGCCACCTTGGATCTGCTGGCCCAGCAGCTGCACCCCTCAGCTGTGGACAGCCGTGCGGTGGCCATCATTGGCCCTGACAGTAGTTCCTATGCTTTCACACCAGCAGCTGCACTAGGGGTGTTCCTGGTTCCTCAGGCTACAAATGAACTGCTTAGCAACAAGCTCCTCTATCCATCTTTCTTCCGCACCATTCCAAGCGACAAAAACCAAGTCAACGCAATGATCCAGGTTCTCGTCAAGTTTAACTGGACCTGGATCGCCCTTCTCGGTAGTGACAATTCATATGGTATACAGGGAATGCAAAGCCTATCAGAGCAAGCTCCACTTAACAATATATGCATCGCATACCAAGCCCAGATCCCTGCGGTAACAGACAGCACAAAGAAATACATGCAAGACATGgtcaaaaacatcctcaaaactaAAGTCAACACTATAGTTGTCTTTGCCAATAAGAGACGGGCTGCAGGTTTCTTTCCTTTTGTTATTGCCCAAAACGTGACGGGTAAAGTGTGGATTGGGACAGAGGACTGGTCAGTGGCGTCGACGGTTAGTAGTATTCCAGGAATCAGTATGATAGGGACAGTCATTGGTGTTGCTGTTAAATATACTGAATTTGATGGTTTTGACAATTACGAAAGGCTTTCTGTGCCCGGGCTAAAAAACCCTGGTCAATTTAACCTCAGTGTCCCGTGTATGCAAAACACAAACCTTTACGATATAGCAATTAATGGCTTTTCTTTGTCGCAGTACGACATTACCTCCTCATTTAATGTGTATAAGGCTGTTTACGCAGTGGCTCATGCGCTGCACAATGTACTGGATTGTGACTCTGGACTGTGTCAGAAATATGACGTGCAGCCATGGCAGGTTTATGAGCAGCTGAGACAAGTGCGCTTTTCCATCCGAAATGCATCATTTTACTTTGATAAGAATGGAGACCCTCCCACGGGTTATGACATAGTGACTTGGGAATG
>TCONS_00042972
ATGGGAACGATGTTGAGCAATTTTGTGTTTCTCTGTCTCTTGAGATTCAGTGACAGCACAGGTCTCCACCTTCAAGGAGATTATATCCTCTCTGGCTGGTTTGCTCTGCATAATTCAGATTCCACCATCCCACCAACTCCTTACCTGAATGACTGCAAGAAagGTTTGACCAACAAGCATGGCTATCATCTGGTGCAGGCCTTCAGATATGCCGTAGACGAAATTAACAACGGCACCCAGGACAAGCAGCTCCTTCCTGGGGTCACACTGGGCTACCGGACATATGACATATGCTCTCTCCCAGCCAGCAATCTGGCCACCTTGGATCTGCTGGCCCAGCAGCTGCACCCCTCAGCTGTGGACAGCCGTGCGGTGGCCATCATTGGCCCTGACAGTAGTTCCTATGCTTTCACACCAGCAGCTGCACTAGGGGTGTTCCTGGTTCCTCAGATCTCTTACGAGGCTACAAATGAACTGCTTAGCAACAAGCTCCTCTATCCATCTTTCTTCCGCACCATTCCAAGCGACAAAAACCAAGTCAACGCAATGATCCAGGTTCTCGTCAAGTTTAACTGGACCTGGATCGCCCTTCTCGGTAGTGACAATTCATATGGTATACAGGGAATGCAAAGCCTATCAGAGCAAGCTCCACTTAACAATATATGCATCGCATACCAAGCCCAGATCCCTGCGGTAACAGACAGCACAAAGAAATACATGCAAGACATGgtcaaaaacatcctcaaaactaAAGTCAACACTATAGTTGTCTTTGCCAATAAGAGACGGGCTGCAGGTTTCTTTCCTTTTGTTATTGCCCAAAACGTGACGGGTAAAGTGTGGATTGGGACAGAGGACTGGTCAGTGGCGTCGACGGTTAGTAGTATTCCAGGAATCAGTATGATAGGGACAGTCATTGGTGTTGCTGTTAAATATACTGAATTTGATGGTTTTGACAATTACGAAAGGCTTTCTGTGCCCGGGCTAAAAAACCCTGGTCAATTTAACCTCAGTGTCCCGTGTATGCAAAACACAAACCTTTACGATATAGCAATTAATGGCTTTTCTTTGTCGCAGTACGACATTACCTCCTCATTTAATGTGTATAAGGCTGTTTACGCAGTGGCTCATGCGCTGCACAATGTACTGGATTGTGACTCTGGACTGTGTCAGAAATATGACGTGCAGCCATGGCAGGTTTATGAGCAGCTGAGACAAGTGCGCTTTTCCATCCGAAATGCATCATTTTACTTTGATAAGAATGGAGACCCTCCCACGGGTTATGACATAGTGACTTGGGAATGGACGAATGGGTTGTGGTCATTTAAGGTGGTGGGAAATTACAGTCCTAGTGCCAATGATCTTCATTTAGACGACTCTCAGATTGACTGGTCAGGACAAGTGTCTCCTGTAACCAATGTTCCTGAGTCTATATGTTCTCCGGAATGTCCTTATGGATTCAGAAAGCTGATGACAGGACAGCATAAGTGTTGCTTTGACTGCATGGCATGCCCTGCGGCCACCTTTCTCAACAAAACAGGCTACACCAGCTGCCAGCCGTGTCCAATAGATGACTGGTCTGAAGCAGAGAGCGAGGTGTGTTTGCCGAGGGCAGAGCTGTACCTGTCCTGGGGCGCTCCTCTCACCACAGCCCTGATCATTTATCTAGCCGTGACTCTGTTTGTGACCCTGGGCACAACGCTGGTCTTTCTGCTGAATCTCAGCACTCCTGTGGTGAAGTCGGCTGGAGGAAAGACCTGTCTGCTGATGCTGGTGTCTATGATCGTGGCCTGCTGCAGCACCTTGTGTCACTTCAGCAGGCCGTCCCGTGTCGGCTGCCTTCTCAAACAGCCCCTCTTTGTCATCAGCTGCACTGTGTGCCTGGCCTGTGTCACTGTGCGCTCTTTTCAGGTTGTTTGTATATTCAAGTGGTCCTCCAAGCTGCCAAGATCCTATGAAACCTGGGCGAAGAATCGAGGGCCTGAGATGTTCATCCTCATCACGACGGTGGTGGAGACCTTCATCTCTGTTCTCCGCATGCTCCTTGACCCCCCGTTTCCATCTCAGGACTACAACTTCTACCATGACAGCATTGTCCTGGAGTGCAGCAAGACTCTGTCTCTCAGTGCCTTTGCTGAGCTCTTTTTTGTCTGTGCGCTGAGCTTAGTTTGCTTCTGCCTGAGTTACATGGGCAAAGATCTGCCAGCCAATTACAATGAGGCCAAGTGCATCACATTCAGCCTTATGATTTACATGATTTCTTGGATCACGTTCTTTACAGCTTACTGTATTTCCAGAGGGAGCTTCGTCATGGCACTAAATGTAGGGGCGATTCTTCTTAGCGTGTTGGGGATACTCGGCGGATACTTCTTGCCAAAGGTGTACATAATCTTGATTAAACCCCAACTCAATACAACGGCTCACTTTCAAAACTGCATTCAAATGTATACCATGGCCAAGCAGTGA

Function

symbol description
tas1r1 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill raker; mouth; and pharynx. Orthologous to human TAS1R1 (taste 1 receptor member 1).

GO:

id name namespace
GO:0007186 G protein-coupled receptor signaling pathway biological_process
GO:0007165 signal transduction biological_process
GO:0005886 plasma membrane cellular_component
GO:0005887 integral component of plasma membrane cellular_component
GO:0016020 membrane cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0038023 signaling receptor activity molecular_function
GO:0004930 G protein-coupled receptor activity molecular_function

KEGG:

id description
ko04742 Taste transduction
ko04030 G protein-coupled receptors

ZFIN:

id description
ZDB-GENE-060208-2 Predicted to enable G protein-coupled receptor activity. Predicted to act upstream of or within G protein-coupled receptor signaling pathway. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in gill raker; mouth; and pharynx. Orthologous to human TAS1R1 (taste 1 receptor member 1).

Ensembl:

ensembl_id ENSDARG00000056739

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042971 False 1292 mRNA 0.47 4 21424747 21433332
TCONS_00042972 True 2466 mRNA 0.48 7 21424747 21440054

Neighbor

gene id symbol gene type direction distance location
XLOC_021648 iffo2a coding upstream 6811 21380079 ~ 21417936 (+)
XLOC_021647 ubr4 coding upstream 47900 21278948 ~ 21376847 (+)
XLOC_021646 emc1 coding upstream 147225 21261313 ~ 21277522 (+)
XLOC_021645 si:dkey-201k7.1 coding upstream 241481 21181074 ~ 21183266 (+)
XLOC_021644 kcnab2b coding upstream 310015 21067389 ~ 21114732 (+)
XLOC_021650 her4.2 coding downstream 15098 21455152 ~ 21461140 (+)
XLOC_021651 NA coding downstream 33048 21473102 ~ 21474482 (+)
XLOC_021652 si:dkey-1c11.1 coding downstream 39904 21479958 ~ 21490515 (+)
XLOC_021653 icmt coding downstream 52097 21492151 ~ 21498974 (+)
XLOC_021654 arhgef10lb coding downstream 104173 21544227 ~ 21563055 (+)
XLOC_021632 CR352228.2 non-coding upstream 952877 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 1063321 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 1237008 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 1948596 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 2205807 19217528 ~ 19218940 (+)
XLOC_021656 CR847529.1 non-coding downstream 183681 21623735 ~ 21623849 (+)
XLOC_021659 CR548634.2 non-coding downstream 341523 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 465999 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 1132104 22572158 ~ 22593289 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06921000_06929478 TAS1R1 coding CI01000001 null 6921000 ~ 6930359 (+)