XLOC_021652 (si:dkey-1c11.1)


Basic Information

Item Value
gene id XLOC_021652
gene name si:dkey-1c11.1
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21479958 ~ 21490515 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042979
CAATGATAGAGTCAGTGATGAGATGAGAGCTCTTCTTTTGTTCAGGTATTTAGGTTATAGGCGACGCCCGTGACTCGCAGTCTTCAGTCTTCAATGAGAGCTCGAGACTGCGCTTCTTCACACTCCAcatctctctctcctccacaacTCACTCGCGCTCATTGTAAACTGAGACAAGCAATAACggaaggcacacacacacaccggagaACAGAATGGCAGTTTCCTGTTGGTATTTTGCCTTATTTCTCATCTTTGACTTGATGGCTATGACACTGGGCACCAACACCCACCACAATTCACCAATGGAAGTCTTCAGCGAAAACATAATAATCCCGCCCAAGCCAGAGGCATCCATACATCATCACACTCATCAAAGGACAGACAGAGGACGCAAGGAGAGGATGACAGCCGGTCAGCTCAGAGAAAGACCCCGCATTGCCATCTTCCACACCCAAAATGAAGGGCCAGACCTGGAGGGCCTCAGTCCCGTTCGCTTAGAGATGGAACCGGCAGACAAACGTCGGGTAATGACTCCTAGAAAGAAGACCTTCATGGGCTCTGATTCCTTAATTCaagaaaaaatgaatatttcTCCTGGTGCCGAGACTCCAGAGAAGGCGATGAGGCGTCCCACTGTTCGAAAAGTGTTTGGAGGGCACATCACTAGGGCTCCTCATGAGGAAGAGTCTTTGGCATCAGGGAAGAAACGGAGGGTTTCTTTTGATCAAAGGCTCAATAAAGCCTCCTTTGGGAGTCCCACAGAGCCAGTGCTTCCTGCTGCCACTGTTGGCACCTTCATATTGCCCATAACTGCAGCAGTCGATGGGAATCCAAACCCCTCAAGTGAACCGCAGGTCAGACGTTATTTAGGTGGGGATGTGGCGCCCACTTTTAACATGGCCTTATTTGACTGGACGGATTATGAAGATATGAGGCCTGGAGATAAAAAGCAATATTCGAAAAAGCAAGGTTCTGAAAAACAGGCTACACAAAGCCCAAGCACTGGACTTGTGAGACTTACATCAGAAAATAATGTCTGTAAACATCATCTGGATTGTCTGCCAGGTTCCTGCTGCAATCTCAGAAAGCATGTGTGTGAGCTTCATAACCGTGGCTTCAATAACAAGTGCTATGACAGCTGCATGTGTGAGGAAGGTGAGTGAGTGTCTTTTGACTGATTATCACTCATGTTGACAGATTGGAGATCGTGTTTTAAACTGTTCCTTGCATTTTCACAGGACTTCGGTGCTATGCAAAATCACACAGACATTACCGCATCACCCGCAAAAAGGGACAGTGTGTTGATCCTGAGGACTTAAATCATGGCATGTTCATTATTGTTTAAATGAGAAGAATAAGTCATTTTCTTTATAAATGCATGCAATTATACACTGCCCTCAACTAATATTGGCACGCTTGGTAAAAACAAGCAAAGAAAGATGGGgagaaaatgttttgctcaaaatattaacacaaaaaaacaaaaaatgcttgggTTTGATTTTAGATAAGTGTAGAGGCTTTTTACTTGGAAACCTTTCAAACAATATTGTTGATGTGGAATTGTAGTTTTGGAGACTTTTTGACCACAAGACACAACAAACATCTGCAATTCTGCAGCTGTGGGTTTTTTGGCATTTCGAACCATCCTTCTGACAAGATAAACACACATCCTCTTCTAGACTGATTCAGAGCACATCCATTTTGCGAAGCTCAACAAACTTTGCTGCAAACCACAGCTGTTCTTTGCTTTTCCCTATTGTGATGAATTTCTAAGTGAGTTTGGCCTGTGTGTTTCCTCGCATTTTTAGACGTGTGAAACAAGAGGTGGTTGAACAATTTTCTGTTCCTAGTCACAAAGGTGTACTAAGCAAATATAGAACAAAATGGCAATTATTACGCTCTCTTGTGTTGTTTTACATTCCCTGAGATTTTCGTTTATCCTCAGAACACAAATTTAGGTAAAATCTGACAACTCTTTGGCTTTTCATAGCggtttaaattcaattcaattcaattcaattcaattaatctttatttaaataacactttttacaatgtaaattctagtaaattgaaactatcAGTCCacttttcagagttgaagttcggtTTAGTTTAGTTcggttcagtgtggtttcattttcactgctgaatgcacaaaaactgaagagcaaatccactgatgcgcagctccacaagtcctaaacaAAGCAAGCCAGGGGCGaaagtggcgaggaacaaactataccaattgacgaaagtgaagggcaaaaaacattgagagaaaccaggctgttgggcacgaccatttcctCTCTGGCCAaccgtcttgtgcagagctgcattcTAGGCTCCAGAGGCTGAAGAACCCTGGATGTTCAATGTGGAGAGGCTgtaggtgtgagtaggtcacaaGTGGGTGTTTAGACTGGCCCACGGGATCAGTGCGGAGATTCGTCTGTcacttctccatgaccaccacagcatctgctcaggatacggcattgtccaggattatggaaacctctgGAATAATGAAAAACAGacttttgggaagtgttcccggcTCCAGTTGCCCTACATCCATACAAAGCTATAAGAacccatttatacaaaaaaaggtttttgcaATGCATTGTTTTTGTATTAGATCAGAGCGCATGTTTACTATGGGCAAAACAGCACTGGGTTAACCCTTTGAAGGGCTTAGGGCATAAGGATGAGCCcttctgaatgtaaaatgctgtTTTACACCAAACAACTTCACTGCACTGTTGTTGCTTGTTTTTCTGCCCTTAAGTTTGAATGTTTCACGACCCATACTGTCTATAAAAGGTcagagagctctctgatttcatctaaaatacctTCATTTCTGTTGTGAAGATGAATGGAGGTCTCAGAGGATTATAAGGACATAAGGGTGACTAATTAATCCCagatttgtcatttttgggttaattaaccctttaaaaaGTTAAATGGTAAAAGCATCTTTTCACCCCTTCATTGCTTATATTTACCAACGTTGCCAATATTAGTAATTAATACTCTATTTTTCACTGTTTTAGAATTTTGTATTCATCCTCATCAACATTCCTGATTGTTTTCTTGaatatttctttttcttaaatttgtaaaacatttgcaACGATATTCTGAAAATGCTGATTACATATCTGCAGGAAAACATATTATTTATGCCTGCaatttcagttcatttaaatcaataaaaaaatgagCTGTAATGTGTTATGAACCTTGTGATATGAAGATTAAATGTTTCATTTGTAACAAATATACTGAAAGTTATTGCATGTAGGTCATTTGTAATTTGTATTCAGAGTTGAGTTACATGGCTCTGTTGTTGTTCTCCCAGTGAAACAGCAGTCAGCAGATGGATGCAGATGTAAAGACGGTCTTTTTAATGTTGCGACTGTACTGTCTGCCAGTGTCCAGCCAGATGAGCGGCTTTGTAATGGACACACAAAGAAGTACACAAGGGAGATGTCCATCTGACATTATTAAAccattaaatctttattttggcTCATATCTGAATTACTCTAAACACTTTGTAGTATGCTGGAATTATGCTTCTTATCACACTCAATGAGAGCCATCATTCTGTGTTATAGGACAAATATTGTGCTTGTCTTATTTTAGTGCTTTGCTGTCCCGAATATACGTTACAgctgtaatattatttttaaaatagtttattttattgtgtgtgcATGGgttgcaaaataaaaataggatCCTGTTTGACAA
>TCONS_00042980
ctctctcctccacaacTCACTCGCGCTCATTGTAAACTGAGACAAGCAATAACggaaggcacacacacacaccggagaACAGAATGGCAGTTTCCTGTTGGTATTTTGCCTTATTTCTCATCTTTGACTTGATGGCTATGACACTGGGCACCAACACCCACCACAATTCACCAATGGAAGTCTTCAGCGAAAACATAATAATCCCGCCCAAGCCAGAGGCATCCATACATCATCACACTCATCAAAGGACAGACAGAGGACGCAAGGAGAGGATGACAGCCGGTCAGCTCAGAGAAAGACCCCGCATTGCCATCTTCCACACCCAAAATGAAGGGCCAGACCTGGAGGGCCTCAGTCCCGTTCGCTTAGAGATGGAACCGGCAGACAAACGTCGGGTAATGACTCCTAGAAAGAAGACCTTCATGGGCTCTGATTCCTTAATTCaagaaaaaatgaatatttcTCCTGGTGCCGAGACTCCAGAGAAGGCGATGAGGCGTCCCACTGTTCGAAAAGTGTTTGGAGGGCACATCACTAGGGCTCCTCATGAGGAAGAGTCTTTGGCATCAGGGAAGAAACGGAGGGTTTCTTTTGATCAAAGGCTCAATAAAGCCTCCTTTGGGAGTCCCACAGAGCCAGTGCTTCCTGCTGCCACTGTTGGCACCTTCATATTGCCCATAACTGCAGCAGTCGATGGGAATCCAAACCCCTCAAGTGAACCGCAGGTCAGACGTTATTTAGGTGGGGATGTGGCGCCCACTTTTAACATGGCCTTATTTGACTGGACGGATTATGAAGATATGAGGCCTGGAGATAAAAAGCAATATTCGAAAAAGCAAGGTTCTGAAAAACAGGCTACACAAAGCCCAAGCACTGGACTTGTGAGACTTACATCAGAAAATAATGTCTGTAAACATCATCTGGATTGTCTGCCAGGTTCCTGCTGCAATCTCAGAAAGCATGTGTGTGAGCTTCATAACCGTGGCTTCAATAACAAGTGCTATGACAGCTGCATGTGTGAGGAAGGACTTCGGTGCTATGCAAAATCACACAGACATTACCGCATCACCCGCAAAAAGGGACAGTGTGTTGATCCTGAGGACTTAAATCATGGCATGTTCATTATTGTTTAA
>TCONS_00042981
ggtgtacctatatatgttgagcactgtgtATATtcattttagacaacacaataccaataTTTTTACATCAGAAGAGTTAGGAAAGTAATATTTGGTGGGAAAACCCTTTTTTTAATcgtaataaatgaaaacatttgttaacaGACCTACAGTAGAATACAGAATACATATTCTAATTATAAACTATTgaatttattttagaataaatctatttattattattataacttttacTTTACCAGGAAAAGCactttgagataaaaaaaaatctctttaacAAGAGCGTTCTAGCCAAGATTAAGCAGTATACAGTTCACATCGGTTTAACAagcgaacaaacaaaaaaacattatttatccatcaaaacacacatacaacGACAGATAAAAACTATTCAGAACATCTACAGGCCAATGTTTCAAACTCCAAATCatttcaaatctttttaaatgcaggTAGTGAAATCAACTCTTTAAATGGCTACTTTGTTTGGAGGTATGTCCatgcatatttaattttaatttatcagTACCCACCAATGGTACAGACAATAAATAAACTTTCTAAAACCGAAGGCTATAGCTagggacagtttttttttcaacttcaAGTTTGGAGATACAGTATGAGGTGAGTAAACCCAGAATAGATTTCTAAACAAAAATATGCCAGTGCTTGAGCCTGCAAGTGGACAAAACAGATCATCTTACCCGAGTGTACAACAGACAATGGTAAGTGAGAGACTGAAGATTTATTATAAACCTCAGTGCACCAAACTCTGAGAAGATGCATGCATCTAAATAACATTGTCATAGTCCAATACAGACATTAAAGTTGCAGAAACAAGCTTCTTGTATCTTGTGTGTAAAATaatcaacattttaaaatcacatatacaattattattattattaattcttgaTTATTTACATTTCTACATCTAGAATGGCAGTTTCCTGTTGGTATTTTGCCTTATTTCTCATCTTTGACTTGATGGCTATGACACTGGGCACCAACACCCACCACAATTCACCAATGGAAGTCTTCAGCGAAAACATAATAATCCCGCCCAAGCCAGAGGCATCCATACATCATCACACTCATCAAAGGACAGACAGAGGACGCAAGGAGAGGATGACAGCCGGTCAGCTCAGAGAAAGACCCCGCATTGCCATCTTCCACACCCAAAATGAAGGGCCAGACCTGGAGGGCCTCAGTCCCGTTCGCTTAGAGATGGAACCGGCAGACAAACGTCGGGTAATGACTCCTAGAAAGAAGACCTTCATGGGCTCTGATTCCTTAATTCaagaaaaaatgaatatttcTCCTGGTGCCGAGACTCCAGAGAAGGCGATGAGGCGTCCCACTGTTCGAAAAGTGTTTGGAGGGCACATCACTAGGGCTCCTCATGAGGAAGAGTCTTTGGCATCAGGGAAGAAACGGAGGGTTTCTTTTGATCAAAGGCTCAATAAAGCCTCCTTTGGGAGTCCCACAGAGCCAGTGCTTCCTGCTGCCACTGTTGGCACCTTCATATTGCCCATAACTGCAGCAGTCGATGGGAATCCAAACCCCTCAAGTGAACCGCAGGTCAGACGTTATTTAGGTGGGGATGTGGCGCCCACTTTTAACATGGCCTTATTTGACTGGACGGATTATGAAGATATGAGGCCTGGAGATAAAAAGCAATATTCGAAAAAGCAAGGTTCTGAAAAACAGGCTACACAAAGCCCAAGCACTGGACTTGTGAGACTTACATCAGAAAATAATGTCTGTAAACATCATCTGGATTGTCTGCCAGGTTCCTGCTGCAATCTCAGAAAGCATGTGTGTGAGCTTCATAACCGTGGCTTCAATAACAAGTGCTATGACAGCTGCATGTGTGAGGAAGGACTTCGGTGCTATGCAAAATCACACAGACATTACCGCATCACCCGCAAAAAGGGACAGTGTGTTGATCCTGAGGACTTAAATCATGGCATGTTCATTATTGTTTAAATGAGAAGAATAAGTCATTTTCTTTATAAATGCATGCAATTATACACTGCCCTCAACTAATATTGGCACGCTTGGTAAAAACAAGCAAAGAAAGATGGGgagaaaatgttttgctcaaaatattaacacaaaaaaacaaaaaatgcttgggTTTGATTTTAGATAAGTGTAGAGGCTTTTTACTTGGAAACCTTTCAAACAATATTGTTGATGTGGAATTGTAGTTTTGGAGACTTTTTGACCACAAGACACAACAAACATCTGCAATTCTGCAGCTGTGGGTTTTTTGGCATTTCGAACCATCCTTCTGACAAGATAAACACACATCCTCTTCTAGACTGATTCAGAGCACATCCATTTTGCGAAGCTCAACAAACTTTGCTGCAAACCACAGCTGTTCTTTGCTTTTCCCTATTGTGATGAATTTCTAAGTGAGTTTGGCCTGTGTGTTTCCTCGCATTTTTAGACGTGTGAAACAAGAGGTGGTTGAACAATTTTCTGTTCCTAGTCACAAAGGTGTACTAAGCAAATATAGAACAAAATGGCAATTATTACGCTCTCTTGTGTTGTTTTACATTCCCTGAGATTTTCGTTTATCCTCAGAACACAAATTTAGGTAAAATCTGACAACTCTTTGGCTTTTCATAGCggtttaaattcaattcaattcaattcaattcaattaatctttatttaaataacactttttacaatgtaaattctagtaaattgaaactatcAGTCCacttttcagagttgaagttcggtTTAGTTTAGTTcggttcagtgtggtttcattttcactgctgaatgcacaaaaactgaagagcaaatccactgatgcgcagctccacaagtcctaaacaAAGCAAGCCAGGGGCGaaagtggcgaggaacaaactataccaattgacgaaagtgaagggcaaaaaacattgagagaaaccaggctgttgggcacgaccatttcctCTCTGGCCAaccgtcttgtgcagagctgcattcTAGGCTCCAGAGGCTGAAGAACCCTGGATGTTCAATGTGGAGAGGCTgtaggtgtgagtaggtcacaaGTGGGTGTTTAGACTGGCCCACGGGATCAGTGCGGAGATTCGTCTGTcacttctccatgaccaccacagcatctgctcaggatacggcattgtccaggattatggaaacctctgGAATAATGAAAAACAGacttttgggaagtgttcccggcTCCAGTTGCCCTACATCCATACAAAGCTATAAGAacccatttatacaaaaaaaggtttttgcaATGCATTGTTTTTGTATTAGATCAGAGCGCATGTTTACTATGGGCAAAACAGCACTGGGTTAACCCTTTGAAGGGCTTAGGGCATAAGGATGAGCCcttctgaatgtaaaatgctgtTTTACACCAAACAACTTCACTGCACTGTTGTTGCTTGTTTTTCTGCCCTTAAGTTTGAATGTTTCACGACCCATACTGTCTATAAAAGGTcagagagctctctgatttcatctaaaatacctTCATTTCTGTTGTGAAGATGAATGGAGGTCTCAGAGGATTATAAGGACATAAGGGTGACTAATTAATCCCagatttgtcatttttgggttaattaaccctttaaaaaGTTAAATGGTAAAAGCATCTTTTCACCCCTTCATTGCTTATATTTACCAACGTTGCCAATATTAGTAATTAATACTCTATTTTTCACTGTTTTAGAATTTTGTATTCATCCTCATCAACATTCCTGATTGTTTTCTTGaatatttctttttcttaaatttgtaaaacatttgcaACGATATTCTGAAAATGCTGATTACATATCTGCAGGAAAACATATTATTTATGCCTGCaatttcagttcatttaaatcaataaaaaaatgagCTGTAATGTGTTATGAACCTTGTGATATGAAGATTAAATGTTTCATTTGTAACAAATATACTGAAAGTTATTGCATGTAGGTCATTTGTAATTTGTATTCAGAGTTGAGTTACATGGCTCTGTTGTTGTTCTCCCAGTGAAACAGCAGTCAGCAGATGGATGCAGATGTAAAGACGGTCTTTTTAATGTTGCGACTGTACTGTCTGCCAGTGTCCAGCCAGATGAGCGGCTTTGTAATGGACACACAAAGAAGTACACAAGGGAGATGTCCATCTGACATTATTAAAccattaaatctttattttggcTCATATCTGAATTACTCTAAACACTTTGTAGTATGCTGGAATTATGCTTCTTATCACACTCAATGAGAGCCATCATTCTGTGTTATAGGACAAATATTGTGCTTGTCTTATTTTAGTGCTTTGCTGTCCCGAATATACGTTACAgctgtaatattatttttaaaatagtttattttattgtgtgtgcATGGgttgcaaaataaaaataggatCCTGTTTGACAA

Function

GO:

id name namespace
GO:0007411 axon guidance biological_process
GO:0016055 Wnt signaling pathway biological_process
GO:0005576 extracellular region cellular_component

KEGG: NA

ZFIN:

id description
ZDB-GENE-081104-352 Predicted to act upstream of or within Wnt signaling pathway and axon guidance. Predicted to be active in extracellular region. Orthologous to human DRAXIN (dorsal inhibitory axon guidance protein).

Ensembl:

ensembl_id ENSDARG00000087681

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042979 False 3780 mRNA 0.41 6 21479958 21490515
TCONS_00042980 False 1133 mRNA 0.48 7 21480090 21488083
TCONS_00042981 True 4427 mRNA 0.38 6 21482571 21490515

Neighbor

gene id symbol gene type direction distance location
XLOC_021651 NA coding upstream 5476 21473102 ~ 21474482 (+)
XLOC_021650 her4.2 coding upstream 18818 21455152 ~ 21461140 (+)
XLOC_021649 tas1r1 coding upstream 39904 21424747 ~ 21440054 (+)
XLOC_021648 iffo2a coding upstream 62022 21380079 ~ 21417936 (+)
XLOC_021647 ubr4 coding upstream 103111 21278948 ~ 21376847 (+)
XLOC_021653 icmt coding downstream 1636 21492151 ~ 21498974 (+)
XLOC_021654 arhgef10lb coding downstream 53712 21544227 ~ 21563055 (+)
XLOC_021655 arhgef10lb coding downstream 76313 21566828 ~ 21631054 (+)
XLOC_021656 CR847529.1 coding downstream 133220 21623735 ~ 21623849 (+)
XLOC_021657 igsf21b coding downstream 147743 21638258 ~ 21661916 (+)
XLOC_021632 CR352228.2 non-coding upstream 1008088 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 1118532 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 1292219 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 2003807 19473396 ~ 19476151 (+)
XLOC_021659 CR548634.2 non-coding downstream 291062 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 415538 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 1081643 22572158 ~ 22593289 (+)
XLOC_021671 NA non-coding downstream 1450017 22940532 ~ 22941229 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000001_06956478_06959048 NA coding CI01000001 null 6955499 ~ 6959620 (+)