XLOC_021650 (her4.2)


Basic Information

Item Value
gene id XLOC_021650
gene name her4.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007134.7
NCBI id CM002907.2
chromosome length 46223584
location 21455152 ~ 21461140 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00042973
AGCACAGCTCAGATCTGATCCTGACGGAGAACTGAACACAAGACACACAGCAATGGCTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCATCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAACACACGCAAACAGCAGCGCCAAACAACACACTCCAGCCCGCAGTCACATCTGGAGACCCTGGTAGAGCCCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATTACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCGTCTATACGATGACCACACGGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAaagtatttcacttttatttgtaaaGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACTTCTTATTTctgttgtttgaaataatttcATCTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAGGACTTGTTTGTGTGTTGAAGCACAAatgattgtttttaatatttgcatGAAGGAGACTTTTCCCCTGTAAAGGGCAGACAAATGTTCTCACTGTTTGTGAAAGAATTTGACTTTTATATGCAGTCATTTTCTTACCTTCATTGAAGGTTCTTGCGCTGCATGTAAAGGATGATCACACTACTTTCTTTTATAGaaagtgctttatttttatttctattatttctattgtttctattgtttgctgtttttctCTTATTGTTAGAGAAATATATCTTCATTTGAAAGATTTATTTGTGTGTTGAAGCACAAATTatagtttttaatgtttgcatgtGTTTACATGAAGAAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGATTTACAAATGTATCTTTTATGTTTAGAGTCATGTTTTTACCTTCTCTGAAGGTGTTTTCTGGTCATTACTTCATATTGAAGtacaacatgaaaataaatgttgagAATTTAAGCTGTA
>TCONS_00042975
AGCACAGCTCAGATCTGATCCTGACGGAGAACTGAACACAAGACACACAGCAATGGCTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCATCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAACACACGCAAACAGCAGCGCCAAACAACACACTCCAGCCCGCAGTCACATCTGGAGACCCTGGTAGAGCCCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATTACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCGTCTATACGATGACCACACGGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAaagtatttcacttttatttgtaaaGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACTTCTTATTTctgttgtttgaaataatttcATCTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAGGACTTGTTTGTGTGTTGAAGCACAAatgattgtttttaatatttgcatgtgtttacaTGAAGGAGACTTTTTCCCTGTATAGGGCAGCTCAATGTTTTCACTGTTAGTGAAAGAATTTGACTTTTATATGCAGTCATTTTCTTACCTTCATTGAAGGTTCTTGCGCTGCATGTAAAGGATGATCACACTACTTTCTTTTATAGaaagtgctttatttttatttctattatttctattgtttctattgtttgctgtttttctCTTATTGTTAGAGAAATATATCTTCATTTGAAAGATTTATTTGTGTGTTGAAGCACAAATTatagtttttaatgtttgcatgtGTTTACATGAAGAAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGATTTACAAATGTATCTTTTATGTTTAGAGTCATGTTTTTACCTTCTCTGAAGGTGTTTTCTGGTCATTACTTCATATTGAAGtacaacatgaaaataaatgttgagAATTTAAGCTGTACTATGTTTTGGAATGTTTTATtcaatcataaataataaatcagaGCGTTTTTGCACC
>TCONS_00042974
AGCACAGCTCAGATCTGATCCTGACGGAGAACTGAACACAAGACACACAGCAATGGCTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCATCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAACACACGCAAACAGCAGCGCCAAACAACACACTCCAGCCCGCAGTCACATCTGGAGACCCTGGTAGAGCCCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATTACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCGTCTATACGATGACCACACGGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAaagtatttcacttttatttgtaaaGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACTTCTTATTTctgttgtttgaaataatttcATCTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAGGACTTGTTTGTGTGTTGAAGCACAAatgattgtttttaatatttgcatgtgtttacaGAGACTTTTCCCCTGTAAAGGGCAGACAAATGTTCTCACTGTTTGTGAAAGAATTTGACTTTTATATGCAGTCATTTTCTTACCTTCATTGAAGGTTCTTGCGCTGCATGTAAAGGATGATCACACTACTTTCTTTTATAGaaagtgctttatttttatttctattatttctattgtttctattgtttgctgtttttctCTTATTGTTAGAGAAATATATCTTCATTTGAAAGATTTATTTGTGTGTTGAAGCACAAATTatagtttttaatgtttgcatgtGTTTACATGAAGAAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGATTTACAAATGTATCTTTTATGTTTAGAGTCATGTTTTTACCTTCTCTGAAGGTGTTTTCTGGTCATTACTTCATATTGAAGtacaacatgaaaataaatgttgagAATTTAAGCTGTACTATGTTTTGGAATGTTTTATtcaatcataaataataaatcagaGCGTTTTTGCACC
>TCONS_00042976
CACAGCTCAGATCTGATCCTGACGGAGAACTGAACACAAGACACACAGCAATGGCTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCATCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAACACACGCAAACAGCAGCGCCAAACAACACACTCCAGCCCGCAGTCACATCTGGAGACCCTGGTAGAGCCCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATTACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCGTCTATACGATGACCACACGGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAaagtatttcacttttatttgtaaaGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACTTCTTATTTctgttgtttgaaataatttcATCTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAGGACTTGTTTGTGTGTTGAAGCACAAatgattgtttttaatatttgcatgtgtttacaTGAAGGAGACTTTTTCCCTGTATAGGGCAGCTCAATGTTTTCACTGTTAGTCAAAGTATTTCACTTTTATATGCAGTCATGCTCTTACCTTCATTAAAGGTTTCTTGCTCTGCATGATCATGCTGCTTTTATTTACTGaaagtgctttatttttatttctattgtttgAAATATATCTGATTTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGAAGGAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGAAAGACTATTACGTTACGTTTTATATGCAGTCATGTTCTTACCTTCATTGAAggttttttgcattatttccctaattttaaatgtc
>TCONS_00042977
CACAGCTCAGATCTGATCCTGAAGGAGAACTGAACACAAGACACACAGCAATGACTCCTACAATCACTGGATCAATCAGCAGCAGAGAAACTCTACTGACAAACAAGCTGAGAAAGCCCATGGTGGAGAAGATCCGCCGAGAGCGAATCAACAGCAGCATCGAGAAGCTCAAGACTCTTCTGGCTCAAGAGTTCATCAAGCAGCAGCCCGACTCCAGACAGGAGAAAGCTGATATCCTGGAGATGACGCTTGATTTCTTGAGACGCTCTCAGAAAAGCAGTGCGGCTGGTGACGGACGCTCCAGATGTGTGCAGGAGGCCGTCAGCTTTCTGTCTCAGTGCCCAGTGCAGACGCAGAGCCACACAAGACTGATGAAGCTCTTCCTGCACATGCAGACTCCTGCAGACCAGCACACACGTGTGGACAATCCTCAGACCACTGAAACACACGCAAACAGCAGCGCCAAACAACACACTCCAGTCCGCAGTCACATCTGGAGACCCTGGTAGAGCCCAGAGCACCCGCCGTACCATTGAGAAAACACGAGTCACGATGCCAGTCTGAGATTGGCATGGACTGAAGTTCAGAAAGTAGGAATTGATTTCCGCCTCTGCAGCTTCTGCAGGACATTTAATCtgctttcagagaaagagagTTTAGTGAAACTGTGTGAGCAGTCATGTTTGATCTCAATGCACACAATCATCTGCTGTGTAGAATGATTATAACAGTGCATTTGTGAAAATTAACATTCAGTAGAAACTTTAAAGTCTGATTCAGACATTTGAGCATTTCACCCATATTGGGTTTGTTTTCTCTTCGTCTATACGATGACCACACTGCTTTAGTTCACTGAAAACACTTGATTTAGATTTCTGCTATTTGAAATGCATCTTATCTTTTCTTATAATATAAGAAACACTTCTTCAGTTGAAAGATTTATTTGTGTGTTGAAGCACAAatgattgtttttaatgtttgcatgtGTTTACATGTAGGAGACTTTTCCCCTGTAAAGGGCAGATCAGTGTTTTCACTGTTAGTCAAgaatttcacttttatttgtaaaGTCATTTTCTTACCTTCATTGAAGGATTCTTGCTCTGCATGTAAAGGATGACCACACTGCTTTCATTTACTGAAAGTGCTTTACttcttatttcttttgtttgaaataatttcATCTTCTCTTATTGTTAGAGAAATATATCTTCATTTGAAGGACTTGTTTGTGTGTTGAAGCACAAATGATTGTTTTATTGTTGGTTACTTTTCCTCTGTAAAGACAAATGTTCTCACTGTTTGTGAAAGAATTTGACTTTTATATGCAGTCATTTTCTTACCTTCATTGAAGGTTCTTGCGCTGCATGTAAAGGATGATCACACTACTTTCTTTTATAGaaagtgctttatttttatttctattatttctattgtttctattgtttgctgtttttctCTTATTGTTAGAGAAATATATCTTCATTTGAAAGATTTATTTGTGTGTTGAAGCACAAATTatagtttttaatgtttgcatgtGTTTACATGAAGAAGACTTTTCCCCTGTAAAGGGCAGCTCAATGTTTTCACTGTTAGTGATTTACAAATGTATCTTTTATGTTTAGAGTCATGTTTTTACCTTCTCTGAAGGTGTTTTCTGGTCATTACTTCATATTGAAGtacaacatgaaaataaatgttgagAATTTAAGCTGTACTATGTTTTGGAATGTTTTATtcaatcataaataataaatcagaGCGTTTTTGCACCATATAa

Function

symbol description
her4.2 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in several structures, including brain; eye; midbrain neural keel; neural plate; and neural tube. Orthologous to human HES5 (hes family bHLH transcription factor 5).

GO:

id name namespace
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0006357 regulation of transcription by RNA polymerase II biological_process
GO:0009952 anterior/posterior pattern specification biological_process
GO:0050767 regulation of neurogenesis biological_process
GO:0048936 peripheral nervous system neuron axonogenesis biological_process
GO:0005634 nucleus cellular_component
GO:0003677 DNA binding molecular_function
GO:0000978 RNA polymerase II cis-regulatory region sequence-specific DNA binding molecular_function
GO:0000981 DNA-binding transcription factor activity, RNA polymerase II-specific molecular_function
GO:0046983 protein dimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081030-7 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in central nervous system. Orthologous to human HES5 (hes family bHLH transcription factor 5).
ZDB-GENE-060815-1 Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II cis-regulatory region sequence-specific DNA binding activity. Acts upstream of or within peripheral nervous system neuron axonogenesis. Predicted to be active in nucleus. Is expressed in several structures, including brain; eye; midbrain neural keel; neural plate; and neural tube. Orthologous to human HES5 (hes family bHLH transcription factor 5).

Ensembl:

ensembl_id ENSDARG00000070770 ENSDARG00000094426

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00042973 False 1737 mRNA 0.39 4 21455152 21461077
TCONS_00042975 False 1804 mRNA 0.39 3 21455152 21461134
TCONS_00042974 False 1799 mRNA 0.39 4 21455152 21461134
TCONS_00042976 False 1694 mRNA 0.40 2 21455154 21456942
TCONS_00042977 True 1783 mRNA 0.38 2 21459263 21461140

Neighbor

gene id symbol gene type direction distance location
XLOC_021649 tas1r1 coding upstream 15098 21424747 ~ 21440054 (+)
XLOC_021648 iffo2a coding upstream 37216 21380079 ~ 21417936 (+)
XLOC_021647 ubr4 coding upstream 78305 21278948 ~ 21376847 (+)
XLOC_021646 emc1 coding upstream 177630 21261313 ~ 21277522 (+)
XLOC_021645 si:dkey-201k7.1 coding upstream 271886 21181074 ~ 21183266 (+)
XLOC_021651 NA coding downstream 11962 21473102 ~ 21474482 (+)
XLOC_021652 si:dkey-1c11.1 coding downstream 18818 21479958 ~ 21490515 (+)
XLOC_021653 icmt coding downstream 31011 21492151 ~ 21498974 (+)
XLOC_021654 arhgef10lb coding downstream 83087 21544227 ~ 21563055 (+)
XLOC_021655 arhgef10lb coding downstream 105688 21566828 ~ 21631054 (+)
XLOC_021632 CR352228.2 non-coding upstream 983282 20471755 ~ 20471870 (+)
XLOC_021628 NA non-coding upstream 1093726 20345310 ~ 20361426 (+)
XLOC_021627 AL953864.1 non-coding upstream 1267413 20187625 ~ 20187739 (+)
XLOC_021614 NA non-coding upstream 1979001 19473396 ~ 19476151 (+)
XLOC_021613 CR388168.1 non-coding upstream 2236212 19217528 ~ 19218940 (+)
XLOC_021656 CR847529.1 non-coding downstream 162595 21623735 ~ 21623849 (+)
XLOC_021659 CR548634.2 non-coding downstream 320437 21781577 ~ 21783450 (+)
XLOC_021660 NA non-coding downstream 444913 21906053 ~ 21914926 (+)
XLOC_021666 NA non-coding downstream 1111018 22572158 ~ 22593289 (+)

Expression


Co-expression Network