CI01000001_07045345_07052918 (IGSF21B, IGSF21)


Basic Information

Item Value
gene id CI01000001_07045345_07052918
gene name IGSF21B, IGSF21
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7045345 ~ 7052970 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_07045345_07052918.mRNA
CCTGCGCTCGGTACATGGTGACTCTTTCAATGGAACTGCAGCACTCAGCAAGACACGGCTGCTTTCCACGGTTGTTCAAGGTTATTTAACAGTCACCATTGAGCCTCTCCCTCCTGTGGTTATGGGGGACACAGTGACTTTGAAGTGCAATTTCAGGACGGATGGCAACTTACGAGAGATTGTGTGGTTTCGGGTGACGGAAGGTGGAACATCAAAACAGAAAATTTTCACCTACGACGCCATGTATAACACCAATTTTTCTCACATGGAGGACTTTCGGAGAAGAGAGGACCTTGTTTACCAGTCAACTGTCAGGCTCCCTGAGGTTCAAATGGAAGATGATGGACCATATGAATGCCATGTGGGGATCTATGACAGGGCATCTAGAGAGAAGGTGGTCTTGGCATCTGGGAGTATCACTCTTAATGTCATGTCTCCACCAAAATCAATATCTGTTGAGGCAGCGAATCAGCCAGCTCGATTCAATCGCTACGAGGCTCAAAACTTCACGCTTGTTTGCATTGTAACTGGAGGAAAACCTGCCCCTGTGGTGTACTTCAAGAGGGATGGGGAACTTATTGAAGTCCATCCTTTCACATCCTCCGAGAAAGTGGAAAACAGAGGCTTGCTTTCTGCCAAGGATAACCAACCGCTTATCAGCCGAGAACTGGACGATACAAAAGTGCAGAAGTCTCTTTCTTTCCTGGGCCCTTACAGCGAACCGGTGCGTCTGGATAAGGACCGGCCCCAGCGTAGCTACACGTCTGGAGCCCCTGGCCAGGAGGAACCCAGTCCCACCACAGAGGTCATCCCAGAGACTGTGATCAGCCGAGAGTTTCCCCGCTGGGTGCTGAGCTCAAGCCCACTGTACTATTTCAACCATACGCAGTCTGAGCTTCATGATGGTACTATGGAGGTCCAAGCTATGCTGACCTGGCACTTGAACCCACAACTGGACAATGAGGCTCTGTTCAGCTGTGAAGTCAAGCACCCGGCTCTATCCATGCCCATGAAGGCAGAGGTTACACTCTCTGCTCCAAAAGGCCCGAAACTCTCGGTGGCTCCAGGCAGAGCGAAAGTGGGAGACACGGTTCGCATCAAAGTGGAGGGATTCCAAATGGGACCCAAAGCGAATGAAGTGTTTCCAGAGCCTCTGTTCACATGGACACGTGTGGGAGGACCTCTGCTGGATGGAAGTGAGGAGAGATTTGGTAAAGTACTGGTTCTGGAGAGAGTCCCAGCTGAGCTCAACGGCTCAATGTACCGCTGCACAGTCCAAAACCCTTTGGGATCTACCAACACGCACACCCGCCTCATAGTATTTGGTCAGTACCAACCGCATTACAAGCAATTCAAGTGGCCTGCAGCCAACACTCAGATGCCTCATACTGTTCAGTTTCTACCTAAGATGTGCACGCTTCACAATGCTGGATCCACATCTGACACTCAGTGTTTTGTCTGTATCCAGCACTTGCATGCTTTAAAATGTTGAAACCATTCCCAAACATCCTTATTTCTCACAGTGTTTTGTTTGTACTCAGTAA

Function

symbol description
igsf21b Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules and homophilic cell adhesion via plasma membrane adhesion molecules. Predicted to be active in adherens junction. Is expressed in central nervous system and retina. Orthologous to human IGSF21 (immunoglobin superfamily member 21).
igsf21 Predicted to be involved in heterophilic cell-cell adhesion via plasma membrane cell adhesion molecules; homophilic cell adhesion via plasma membrane adhesion molecules; and synapse maturation. Predicted to be located in inhibitory synapse and presynaptic membrane. Predicted to be anchored component of external side of plasma membrane. Predicted to be active in adherens junction.

NR:

description
Zgc:112341

GO:

id name namespace
GO:0005575 cellular_component cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_07045345_07052918.mRNA True 1544 mRNA 0.50 8 7045345 7052970

Neighbor

gene id symbol gene type direction distance location
CI01000001_06996957_07040074 NA coding upstream 5264 6996957 ~ 7040081 (+)
CI01000001_06981183_06981774 RPL22 coding upstream 63541 6981183 ~ 6981804 (+)
CI01000001_06960133_06963752 ICMT coding upstream 80915 6960133 ~ 6964430 (+)
CI01000001_06956478_06959048 NA coding upstream 85725 6955499 ~ 6959620 (+)
CI01000001_06948672_06949034 NA coding upstream 96311 6948586 ~ 6949034 (+)
CI01000001_07056922_07065716 DHRS3, DHRS3A coding downstream 3952 7056922 ~ 7066543 (+)
CI01000001_07208833_07215412 NA coding downstream 155313 7208283 ~ 7215507 (+)
CI01000001_07231558_07266828 EIF4G3, EIF4G3B coding downstream 178588 7231558 ~ 7266902 (+)
CI01000001_07330166_07335508 GLUT1, GLUT1A, SLC2A1A, SLC2A1B coding downstream 277196 7330166 ~ 7336036 (+)
CI01000001_07405859_07406484 NA coding downstream 352174 7405144 ~ 7406689 (+)
G16937 NA non-coding upstream 99194 6936142 ~ 6946151 (+)
CI01000001_06893068_06917387 IFFO2A non-coding upstream 127083 6893068 ~ 6917660 (+)
G16317 NA non-coding upstream 244964 6800168 ~ 6800381 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding upstream 312420 6717159 ~ 6747744 (+)
G16284 NA non-coding upstream 371834 6672182 ~ 6673511 (+)
G16977 NA non-coding downstream 38783 7091753 ~ 7123993 (+)
G17019 NA non-coding downstream 99124 7152094 ~ 7152425 (+)
G16970 NA non-coding downstream 226273 7279243 ~ 7284904 (+)
G17057 NA non-coding downstream 263694 7316664 ~ 7319030 (+)
G17061 NA non-coding downstream 270316 7323286 ~ 7323615 (+)
G15995 NA other upstream 1330394 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1755389 5279837 ~ 5287698 (+)
G15794 NA other upstream 1980641 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 3423894 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 5374341 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 479602 7531541 ~ 7540586 (+)
G17234 NA other downstream 979154 8032124 ~ 8032483 (+)
G17353 NA other downstream 2163052 9216022 ~ 9228859 (+)
G17354 NA other downstream 2181493 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2365358 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021657 igsf21b coding NC_007134.7 CM002907.2 21638258 ~ 21661916 (+)