Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU19046 |
| length | 5634 |
| lncRNA type | antisense_over |
| GC content | 0.39 |
| exon number | 2 |
| gene id | G16970 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 7279243 ~ 7284904 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU19101 | lncRNA | upstream | 126818 | 7152094 ~ 7152425 (+) | True | G17019 |
| TU19054 | lncRNA | upstream | 155250 | 7091753 ~ 7123993 (+) | True | G16977 |
| TU18977 | lncRNA | upstream | 333092 | 6936142 ~ 6946151 (+) | True | G16937 |
| TU18962 | lncRNA | upstream | 360981 | 6917686 ~ 6918262 (+) | True | G16922 |
| TU18253 | lncRNA | upstream | 478862 | 6800168 ~ 6800381 (+) | True | G16317 |
| TU19141 | lncRNA | downstream | 31760 | 7316664 ~ 7319030 (+) | True | G17057 |
| TU19145 | lncRNA | downstream | 38382 | 7323286 ~ 7323615 (+) | True | G17061 |
| TU19055 | lncRNA | downstream | 144286 | 7429190 ~ 7430067 (+) | True | G16978 |
| TU19062 | lncRNA | downstream | 148779 | 7507979 ~ 7507990 (+) | True | G16985 |
| TU19025 | lncRNA | downstream | 176224 | 7461128 ~ 7492111 (+) | True | G16961 |
| CI01000001_07231558_07266828.mRNA | mRNA | upstream | 12341 | 7231558 ~ 7266902 (+) | True | CI01000001_07231558_07266828 |
| CI01000001_07208833_07215412.mRNA | mRNA | upstream | 63736 | 7208283 ~ 7215507 (+) | True | CI01000001_07208833_07215412 |
| CI01000001_07056922_07065716.mRNA | mRNA | upstream | 212700 | 7056922 ~ 7066543 (+) | True | CI01000001_07056922_07065716 |
| CI01000001_07045345_07052918.mRNA | mRNA | upstream | 226273 | 7045345 ~ 7052970 (+) | True | CI01000001_07045345_07052918 |
| CI01000001_06996957_07040074.mRNA | mRNA | upstream | 239162 | 6996957 ~ 7040081 (+) | True | CI01000001_06996957_07040074 |
| CI01000001_07330166_07335508.mRNA | mRNA | downstream | 45262 | 7330166 ~ 7336036 (+) | True | CI01000001_07330166_07335508 |
| CI01000001_07405859_07406484.mRNA | mRNA | downstream | 120240 | 7405144 ~ 7406689 (+) | True | CI01000001_07405859_07406484 |
| CI01000001_07421548_07447343.mRNA | mRNA | downstream | 136644 | 7421548 ~ 7447505 (+) | False | CI01000001_07421548_07447343 |
| CI01000001_07527533_07530601.mRNA | mRNA | downstream | 242125 | 7527029 ~ 7531071 (+) | True | CI01000001_07527533_07530601 |
| CI01000001_07531945_07539781.mRNA | mRNA | downstream | 246637 | 7531541 ~ 7540565 (+) | False | CI01000001_07531945_07539781 |
| TU17891 | other | upstream | 1564292 | 5711885 ~ 5714951 (+) | True | G15995 |
| TU17699 | other | upstream | 1989287 | 5289881 ~ 5289956 (+) | True | G15838 |
| TU17650 | other | upstream | 2214539 | 5061218 ~ 5064704 (+) | False | G15794 |
| TU17651 | other | upstream | 2215314 | 5061218 ~ 5063929 (+) | True | G15794 |
| TU16602 | other | upstream | 3657792 | 3616248 ~ 3616411 (+) | True | G14846 |
| TU19033 | other | downstream | 247668 | 7532572 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19037 | other | downstream | 247736 | 7532640 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19034 | other | downstream | 247860 | 7532764 ~ 7540460 (+) | True | CI01000001_07531945_07539781 |
| TU19348 | other | downstream | 747220 | 8032124 ~ 8032483 (+) | True | G17234 |
| TU19478 | other | downstream | 1931118 | 9216022 ~ 9228859 (+) | True | G17353 |
