RNA id: CI01000001_07231558_07266828.mRNA


Basic Information

Item Value
RNA id CI01000001_07231558_07266828.mRNA
length 5297
RNA type mRNA
GC content 0.52
exon number 30
gene id CI01000001_07231558_07266828
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 7231558 ~ 7266902 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

GTACAGAGACCCCCTGGCCCCCCATATACAGCACATGAAATCAGCAAGGGACACCCTAACCTAGCGGCCACACCGCCGGGTCACGCCTCCTCCCCTGGACTCTCTCAGGTATCAGTTCCAACACTATTCTCTGCGCATCTGTATGGTCATCCTAAAGGCTGGGAGGCAGGAGGAGGGGCAGCATTGAGGAGATGGCAGATTTGTCAGTGTCAGCAGACCGCAGTGTTTGCAGCGGCAGGGAGTGGACACATTCACTCTGTCACCCACACTCACACAGCACACGCTCACTCAGCTGTAGGGATTTTATCAGAGAGGGTAATACTCAAATCCATCCTAACTGCTGTTTCTCCTCCTCTGCCGGTGGTCGTTCCTCCTCGACCTCTCTGGGACCCCGTGACTCCGCAGTCTCCGTACACACAGGGGCAGAATGCCGGCACAACCCCTCTGGTCTACTCTCCACCAACCCAGCCAATGAACGCACAGCCTCAGAGCCGCCCGCGCTGTGCTGTTGTTTATAGTGCAGTTTGTGATGATCAGTTGGTGCTGTGTTTATATGGTACATATAACATGCCTTGCGTCATTACTTCCTCTCTGGATGTACGCTGCATATGCCATGCACAGCTTGTGGTTTATGTGTTTGTGGGTGATCATTCTTACCTCTCGCTTCTTTCTTTCTCTCTGATTCCCTCCCTCTGCCATGCCACTCTTTGCCTTCAATCAGTTTGCCACTGGGCCTCGTCCTACCCATCACCAGGTAATTTTTTCCAGAGGGCGCAGATGCAAACGGCCCGGCCCACCATTCCAAGCAACAACCCTTCCATTCGGCCCACATCTCAGACCCCCACGGCAGCGGTCTATTCCCCCAATCAGCCCATCATGATGACCATGGCTCCCATGCCCTTCCATTCCCCACAGACAGCGCAGTACTACATCCCTCAGTACCGTCACAGTCCTCCTCAGTATGTAGGGCCTCCTCCTCAACAGTACTCAGTCCAGCCCACTGGACCCAGTACCTTCTATGCTGGACCCAGTCCAGGGGACTTCCCTGCACCTTATGGTGAGTTTAGCACCCTCATCCCCTTCCTGTCTGCCAGCTTACAAATACCTATCCGCATCCGAGACCCCAACCAGGGCGGCAAGGATGTCACAGACGAGATATTATCAGGGGTGGGTGGGAGTCGGAACCCAACCCCACCTGGGGGACGGCCTTCCTCCACTCCTACACCTCCACAGTTTTTATGTCCGCACCCTCATTATCCTCACATTTTCTACCTCAAATCCCAGCAGCTGAACAACCAGGTAGCAGATCACGGGCATGCAATGTATAATGTGGACAGCGCCCAGCTCAACTTGAAAACAGATGACAAGCCAAAACCAGAGTTTGCTTCGCAAAGATCTGCATCTCCTGGACTGCGGCAGCCAGAGACTTCGTTGGAAAGAATTGATCCAAGCAGCCCAGTCCAAGAGCCCTCTCCCTCACAGAAAACTGAGCTTCCCCCCTCCGGCCCAGAAACGGCCTCAAGTGTAGCTACAGCCCCCAGTCCTTCCATACCTGCCTCAACAGTGGAGTCAGCTGACGCCCAGAGCCCATCAGCTGAGCCCAGCCCCACTAAAGCTGTCACACCAGAACCTGAGAGCTCTGAACCAGAGAAATCCTCCTCCTCAGAGCAACCCTCACCTCAGAGCCTGTCTGCATCTCCAGACCAGCCCGAAAAGGTTGTCAATGGGCTGACGGACACCGATGCTGCTCCCTTGAGTGAAGACTTGGAATCCCAACCAAGGGAAGTCTCTCCGTTGCTGCCTACATCCAGTGTGCCCCAGTCCCCCAGCCCGGAGCCCAGGCCCATCACACCGGCGCTGGACGCTGAGTCTGCGGTGGTAAAAACGGATAGTCCCTTGCCTCCTGCTGAAGACAGCGCTGGATGTTCTGACGTCCCATTCCTCTCGACCTCCTCTACTGCTGCTATCTCCACCACACCTGCACCTCCTCCAGGACTCATACATCCAAGTCAGGTTTCTGCAGGGTCAGCCAGGAGACCTTCTACAGGAGCAGAGCTCAAAGAAACAGGGAAGGAGATTGAGGCCTTGTCGGACAAGAGAGGCGAGCCTTTCTTGCAGTCCAGAAAAGCTACATCTAGTGCACCAAAGACCTGGAAGAACCCAAAAAAGAACATGCCTGTAGGGCAAGATCAGTGTCCAGACAAAGAGGAGGACATGGATCAGCCCTCTATGGAGTCTGCTGCAGAGAGCCCCAGTCCTCCTCCTGTGGAGGTGGAGAGGAGGCCATCAGTAGGAGCTGTGCTCGAGGAGAACGGAGAACAGGACGTAGAGCCTCAGAGAAACGGAGCTGAACACGCCTCTGAAACTGAAAGCAGTGACAGCATCCACCCGCCTGCAGTCAAAGAGCCGCTGATCAAAGCAGTGCCACAGCCTGCAGAGAAGAATGGCAAGAAGCAGTACGATAGAGACTTCCTGTTGGGCTTCCAGTTCATGCCTGCGTGTGTGCAGAAACCAGAGGGGCTTCCTCCCATTTCTGATGTTGTTCTAGATAAGATTAACCAAAATAAGCTGCCCATGCGGCCAATAGACCCACGTGTGATTTCCAGAGGCCCAGACTTCACGCCAGCGTTTGCGGATTTCGGCCGACAGATTCAAGGAGGCAGGGGAGCACCGCTGCTGAACGTTGGCCTGCGGCGCCCACCTGGACGCAAGATCATCACAAACGTGTCTGTGAACGATGAGGTGCAGCTGAGGACAACAGAGAATGCTTGGAAGCCTGGCATGAAGCGGGAGAGTGCCGTTGAAGATCCAGACGCCCAGAAAACTCAGGAGCTTTTCCGAAAAGTGCGTAGTATTCTCAACAAATTGACGCCACAGATGTTCAACCAGCTGATGAAGCAGGTGACTGACCTCACCATTGACACAGAGGAGCGGCTCAAGGGTGTCATAGACCTGGTTTTCGAGAAAGCCATCGATGAACCCAGCTTTTCTGTGGCCTATGGAAATATGTGCAGCTGTCTGGCCATGTTAAAAGTGCCCATGACGGATAAGCCCAACACCACTGTGAATTTTCGGAAGCTGCTTCTGAACCGCTGTCAGAAAGAGTTTGAGAAGGACAAGGTAGATGACGATGCCTTCGAGAAGAAACACAGGGAGCTGGAGGCAGCTACCTCGGCTAGTGAGCGGGAGAGACTGCAGGAAGAGCTGGAAGAGGCGAAAGACAAAGCCCGCAGACGCTCCATTGGCAACATCAAGTTCATCGGCGAGCTCTTTAAGCTGCGGATGCTGACAGAAGCCATCATGCACGACTGTGTGGTGAAGTTGCTGAAAAACCATGACGAAGAGTCACTGGAGTGCCTGTGCAGGCTGCTCACCACTATTGGCAAGGACTTGGACTTTGAGAAAGCTAAGCCACGAATGGATCAGTACTTTAACCAGATGGAGAAGATAGTAAAGGAGAGAAAGACTTCATCACGCATTCGGTTCATGCTGCAGGATGTTATTGACCTGCGATTGCACAATTGGGTGTCTCGGAGAGCTGACCTAGGCCCTAAGACCATCGAGCAGATCCATAAAGAGGCAAAGTTGGAAGAACAGGAGGAGCAGAGAAAGGTGCACCAGCAACTGCTGTCCAAGGATAACAAGAGGAGACCAGGGGTGCAGAGAGAGGAGACATGGAGCACTGTGCCTATGACCAAGAACAGCAGAACAATAGACCCCACTAAGATTCCCAAGATCTCCAAGCCAACAATAGATGAGAAGATTCAGCTGGGACCAAGAAATCAGAACTGGATTAAGGGCAGCAGTGGAGGGGCTGGAGCCAAGGCCAGTGAGTCAGATGTCTCTCGTCCAAGTGCCAGTTTGAACCGTTACTCACCCCTGCAACCCTCAGCGCCTCCGGCCTCGTCTTTACCCTCTACATCCCCAGATTTTGATGCCAGGAGAGTTCTCAGCAGTCGTGGAAGCTCAGGGCGGGAGCGCAATGACAAGCCATTAAGTGTGGGTCCCACTCGGACAGGGCCCATCTTGTTGGGTAGCAGCAATAAGGAGGCTCCCGAGGAGTCGGTCCAGGAAGTGTCCCGCAGAGACTCTTATGCCTCAGACACACCCAAGCTGCCCGCCAGCACTGCAGACAAGAGCAGACTGGAGCGTAGCCAATCCAGGGAGTCTGCTGTTAAACTTGAAGTACTGTCAGGACCCTCTCCAGATAAAACTGCAGAAGAGGACATGGAGAGGCGGTCCAAGTCTATTATTGATGAGTTTTTGCACATTAATGATTACAAGGAGGCAGTGCAGTGTGTGGAGGAGCTAGAGCAACCTGCCATGCTCTATGTGTTTGTGCGGGTGGGTGTGGACTCCACGCTGGAGAGGAGTCAGATCACGCGAGACCATATGGGTCAGCTGCTCTATCAGCTCCTGCACGCTGGAATCCTCCTCAAACTTCAGTTTTTTAAAGGGTTCTCTGAAACTCTTGAAATAGCAGATGATATGGCCATTGATATTCCCCATATATGGCTGTACCTTGCGGAGCTGGTGACCCCTGTACTTCGAGAGGGGGGAATCTCTATGAGAGAATTATTTAGCGAATTTAGCAAACCATTACTCCCTGTGGGAAGAGCTGGGATATTATTTTCTGAAATATTGCACCTTCTATGCAAACAAATGAAATTAGACTTCACTCTTTCTGACGGCTCAAACCTGACCGAGGCTGTCTCTAAGAGAACGCTCTCGCCTGAGGAACTGAACAAGCAACTTGAAAAACTACTACTTGAGGACATGGCTGGCGATGAACAAATCTTCGACTGGGTTGAGGCCAATCTAGATGAATCAGAAATGAGTTCACCTCCTTTCCTCAGAGCTTTAATGACTGCTGTGTGCAAGGCAGCAGTGAAAACCGAGGGCTCCTCATGCAAAGTGGACTTGACCATAATCCAGAGGAGATTGCCTGTATTACACAAATACCTTAACTCAGACACAGAGAGACAGTTGCAAGCACTTTACGCACTTCAAGCTTTGATAGTAAAACTGGACCAGCCTGCTAATTTGCTCCGGATGTTCTTTGACTGTTTGTACGATGAGGATGTGATATCTGAAGATGCTTTCTATAAGTGGGAAGTCAGTAAAGACCCCGCAGAACAGCAAGGCAAGGGCGTGGCCCTGAAGTCAGTCACCGCCTTCTTCACGTGGCTGCGCGAGGCAGAGGAGGAGTCGGAGGACAATTGACGAGAGGACAAACGGACACATTTGCCAACTAGTGCTGAAGAGACAATAGTCATTTAAACAATAACTGCATCAAA

Function

GO:

id name namespace
GO:0003723 RNA binding molecular_function

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19101 lncRNA upstream 79133 7152094 ~ 7152425 (+) True G17019
TU19054 lncRNA upstream 107565 7091753 ~ 7123993 (+) True G16977
TU18977 lncRNA upstream 285407 6936142 ~ 6946151 (+) True G16937
TU18962 lncRNA upstream 313296 6917686 ~ 6918262 (+) True G16922
TU18253 lncRNA upstream 431177 6800168 ~ 6800381 (+) True G16317
TU19046 lncRNA downstream 12341 7279243 ~ 7284904 (+) True G16970
TU19141 lncRNA downstream 49762 7316664 ~ 7319030 (+) True G17057
TU19145 lncRNA downstream 56384 7323286 ~ 7323615 (+) True G17061
TU19055 lncRNA downstream 162288 7429190 ~ 7430067 (+) True G16978
TU19062 lncRNA downstream 166781 7507979 ~ 7507990 (+) True G16985
CI01000001_07208833_07215412.mRNA mRNA upstream 16051 7208283 ~ 7215507 (+) True CI01000001_07208833_07215412
CI01000001_07056922_07065716.mRNA mRNA upstream 165015 7056922 ~ 7066543 (+) True CI01000001_07056922_07065716
CI01000001_07045345_07052918.mRNA mRNA upstream 178588 7045345 ~ 7052970 (+) True CI01000001_07045345_07052918
CI01000001_06996957_07040074.mRNA mRNA upstream 191477 6996957 ~ 7040081 (+) True CI01000001_06996957_07040074
CI01000001_06981183_06981774.mRNA mRNA upstream 249754 6981183 ~ 6981804 (+) True CI01000001_06981183_06981774
CI01000001_07330166_07335508.mRNA mRNA downstream 63264 7330166 ~ 7336036 (+) True CI01000001_07330166_07335508
CI01000001_07405859_07406484.mRNA mRNA downstream 138242 7405144 ~ 7406689 (+) True CI01000001_07405859_07406484
CI01000001_07421548_07447343.mRNA mRNA downstream 154646 7421548 ~ 7447505 (+) False CI01000001_07421548_07447343
CI01000001_07527533_07530601.mRNA mRNA downstream 260127 7527029 ~ 7531071 (+) True CI01000001_07527533_07530601
CI01000001_07531945_07539781.mRNA mRNA downstream 264639 7531541 ~ 7540565 (+) False CI01000001_07531945_07539781
TU17891 other upstream 1516607 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1941602 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 2166854 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 2167629 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3610107 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 265670 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 265738 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 265862 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 765222 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 1949120 9216022 ~ 9228859 (+) True G17353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042994 False 5031 mRNA 0.52 35 NC_007134.7 21978816 ~ 22060520 (+)
bowfin (Amia calva) AMCG00002138 True 7244 mRNA 0.54 33 CM030136.1 4602406 ~ 4636492 (-)