Gene
RNA
| Item | Value |
|---|---|
| RNA id | TU19478 |
| length | 2595 |
| RNA type | TUCP |
| GC content | 0.51 |
| exon number | 16 |
| gene id | G17353 |
| representative | True |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 9216022 ~ 9228859 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| species | grasscarp (Ctenopharyngodon idella) |
| id | name | namespace |
|---|---|---|
| GO:0016071 | mRNA metabolic process | biological_process |
| GO:0000375 | RNA splicing, via transesterification reactions | biological_process |
| GO:0000377 | RNA splicing, via transesterification reactions with bulged adenosine as nucleophile | biological_process |
| GO:0006397 | mRNA processing | biological_process |
| GO:0000398 | mRNA splicing, via spliceosome | biological_process |
| GO:0016607 | nuclear speck | cellular_component |
| GO:0005681 | spliceosomal complex | cellular_component |
| GO:0005685 | U1 snRNP | cellular_component |
| id | description |
|---|---|
| ko03040 | Spliceosome |
| RNA id | RNA type | direction | distance | location | representative | gene id |
|---|---|---|---|---|---|---|
| TU19443 | lncRNA | upstream | 70467 | 9144411 ~ 9145555 (+) | True | CI01000001_09132867_09145278 |
| TU19635 | lncRNA | upstream | 72188 | 9143361 ~ 9143834 (+) | True | G17507 |
| TU19513 | lncRNA | upstream | 124637 | 9088542 ~ 9091385 (+) | True | G17388 |
| TU19510 | lncRNA | upstream | 187071 | 9028681 ~ 9028951 (+) | True | G17385 |
| TU19484 | lncRNA | upstream | 187503 | 9028111 ~ 9028519 (+) | True | G17359 |
| TU19474 | lncRNA | downstream | 35657 | 9264516 ~ 9291390 (+) | True | G17349 |
| TU19694 | lncRNA | downstream | 152276 | 9381135 ~ 9381660 (+) | True | G17566 |
| TU19514 | lncRNA | downstream | 155040 | 9383899 ~ 9384640 (+) | True | CI01000001_09383903_09384322 |
| TU19709 | lncRNA | downstream | 244752 | 9473611 ~ 9473929 (+) | True | G17581 |
| TU19711 | lncRNA | downstream | 245721 | 9474580 ~ 9474783 (+) | True | G17583 |
| CI01000001_09186450_09203866.mRNA | mRNA | upstream | 12156 | 9186333 ~ 9203866 (+) | True | CI01000001_09186450_09203866 |
| CI01000001_09164619_09166621.mRNA | mRNA | upstream | 49297 | 9164541 ~ 9166725 (+) | True | CI01000001_09164619_09166621 |
| CI01000001_09147684_09162673.mRNA | mRNA | upstream | 52807 | 9147684 ~ 9163215 (+) | True | CI01000001_09147684_09162673 |
| CI01000001_09132867_09145278.mRNA | mRNA | upstream | 70503 | 9132867 ~ 9145519 (+) | False | CI01000001_09132867_09145278 |
| CI01000001_09113045_09130978.mRNA | mRNA | upstream | 84700 | 9113045 ~ 9131322 (+) | True | CI01000001_09113045_09130978 |
| CI01000001_09267532_09267951.mRNA | mRNA | downstream | 38603 | 9267462 ~ 9268132 (+) | True | CI01000001_09267532_09267951 |
| CI01000001_09285920_09289361.mRNA | mRNA | downstream | 56929 | 9285788 ~ 9289441 (+) | True | CI01000001_09285920_09289361 |
| CI01000001_09308544_09311741.mRNA | mRNA | downstream | 77842 | 9306701 ~ 9312011 (+) | False | CI01000001_09308544_09311741 |
| CI01000001_09334528_09350703.mRNA | mRNA | downstream | 105669 | 9334528 ~ 9351363 (+) | True | CI01000001_09334528_09350703 |
| CI01000001_09383903_09384322.mRNA | mRNA | downstream | 155044 | 9383903 ~ 9384678 (+) | False | CI01000001_09383903_09384322 |
| TU19348 | other | upstream | 1183539 | 8032124 ~ 8032483 (+) | True | G17234 |
| TU19033 | other | upstream | 1675436 | 7532572 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19037 | other | upstream | 1675436 | 7532640 ~ 7540586 (+) | False | CI01000001_07531945_07539781 |
| TU19034 | other | upstream | 1675562 | 7532764 ~ 7540460 (+) | True | CI01000001_07531945_07539781 |
| TU17891 | other | upstream | 3501071 | 5711885 ~ 5714951 (+) | True | G15995 |
| TU19479 | other | downstream | 5604 | 9234463 ~ 9240677 (+) | True | G17354 |
| TU19459 | other | downstream | 189469 | 9418328 ~ 9438063 (+) | True | G17334 |
| TU21219 | other | downstream | 1011041 | 10239900 ~ 10241492 (+) | True | G18896 |
| TU21190 | other | downstream | 1028253 | 10257112 ~ 10260714 (+) | True | G18873 |
| TU21188 | other | downstream | 1042287 | 10271146 ~ 10281369 (+) | True | G18872 |
