CI01000001_09383903_09384322


Basic Information

Item Value
gene id CI01000001_09383903_09384322
gene name NA
gene type misc
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9383899 ~ 9384678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09383903_09384322.mRNA
ATGGTGTGGGCCACCAGCAATAAGATCGGATGTGCTGTCAGAAGATGTTCAAACATATATGTGTTTGGGAGTACATGGAAACAGGCCACCTTACTGGTTTGCAACTATTCTATCAAGGGGAACTGGGTAGGAGAGGCTCCATATAAGACAGGAAAACCGTGCTCTGCATGTCCCTCAAGCTATGGAGGATCATGCAGTAAAAACCAGTGTGACTCCAGATCAAAATCCAGAAGAAATGCAAGTGGTTTCAGAGGATTAAAAAAATACCTTTAAAAATCTCTAAAAAATAATTTTATTTTATTAAAAATGTTATATAATAGAAACCACTAAAATGTAAATTTCACAATGCAAATTATTCCGTGGTCATTTTATAAAACTTAAGTGCTGTAAAATGTCCAATTAATCAAATGTGTAAATTCTTCTTGTGTTTATCATCACCCCATAGTTGTCAATTTTTTTTATTACTTTATTAAGTTGTTTAATGTTCTCCATTTGTTGTTCAAGGCTATGGACTATTTTGCACTGTTTTACTTATAATTTGTTTTTACTAAGTGGCATCGCAGTGACAATTCGCATCGGGAGTTAAGCACTTTCTTTTATTATTAATATTTTTTCTTTTTGTACATGTA
>TU19514
TCAGATGGTGTGGGCCACCAGCAATAAGATCGGATGTGCTGTCAGAAGATGTTCAAACATATATGTGTTTGGGAGTACATGGAAACAGGCCACCTTACTGGTTTGCAACTATTCTATCAAGGGGAACTGGGTAGGAGAGGCTCCATATAAGACAGGAAAACCGTGCTCTGCATGTCCCTCAAGCTATGGAGGATCATGCAGTAAAAACCAGTGTGACTCCAGATCAAAATCCAGAAGAAATGCAAGTGGTTTCAGAGGATTAAAAAAATACCTTTAAAAATCTCTAAAAAATAATTTTATTTTATTAAAAATGTTATATAATAGAAACCACTAAAATGTAAATTTCACAATGCAAATTATTCCGTGGTCATTTTATAAAACTTAAGTGCTGTAAAATGTCCAATTAATCAAATGTGTAAATTCTTCTTGTGTTTATCATCACCCCATAGTTGTCAATTTTTTTTATTACTTTATTAAGTTGTTTAATGTTCTCCATTTGTTGTTCAAGGCTATGGACTATTTTGCACTGTTTTACTTATAATTTGTTTTTACTAAGTGGCATCGCAGTGACAATTCGCATCGGGAGTTAAGCACT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09383903_09384322.mRNA False 629 mRNA 0.33 2 9383903 9384678
TU19514 True 595 lncRNA 0.35 2 9383899 9384640

Neighbor

gene id symbol gene type direction distance location
CI01000001_09334528_09350703 RBMS2B coding upstream 32540 9334528 ~ 9351363 (+)
CI01000001_09308544_09311741 NA coding upstream 71892 9306701 ~ 9312011 (+)
CI01000001_09285920_09289361 NA coding upstream 94462 9285788 ~ 9289441 (+)
CI01000001_09267532_09267951 NA coding upstream 115771 9267462 ~ 9268132 (+)
CI01000001_09226223_09227218 NA coding upstream 156657 9226089 ~ 9227246 (+)
CI01000001_09400828_09406357 HNF4A coding downstream 14353 9399031 ~ 9407223 (+)
CI01000001_09409294_09411908 TTPAL coding downstream 23341 9408019 ~ 9412431 (+)
CI01000001_09435836_09436037 NA coding downstream 51158 9435836 ~ 9436373 (+)
CI01000001_09477768_09481888 WISP2 coding downstream 93011 9477689 ~ 9481974 (+)
CI01000001_09483845_09484834 NA coding downstream 99167 9483845 ~ 9485747 (+)
G17566 NA non-coding upstream 2243 9381135 ~ 9381660 (+)
G17326 NA non-coding upstream 109944 9213456 ~ 9273959 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A non-coding upstream 238348 9132867 ~ 9145555 (+)
G17507 NA non-coding upstream 240069 9143361 ~ 9143834 (+)
G17581 NA non-coding downstream 88933 9473611 ~ 9473929 (+)
G17583 NA non-coding downstream 89902 9474580 ~ 9474783 (+)
G17587 NA non-coding downstream 172915 9557593 ~ 9557897 (+)
G17588 NA non-coding downstream 173473 9558151 ~ 9558420 (+)
G17594 NA non-coding downstream 183225 9567903 ~ 9568225 (+)
G17354 NA other upstream 143226 9234463 ~ 9240677 (+)
G17353 NA other upstream 155044 9216022 ~ 9228859 (+)
G17234 NA other upstream 1351420 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1843317 7531541 ~ 7540586 (+)
G15995 NA other upstream 3668952 5711885 ~ 5714951 (+)
G18896 NA other downstream 855222 10239900 ~ 10241492 (+)
G18873 NA other downstream 872434 10223879 ~ 10260714 (+)
G18872 NA other downstream 886468 10271146 ~ 10281369 (+)
CI01000001_10395420_10396473 NA other downstream 1008879 10394851 ~ 10396705 (+)

Expression


Co-expression Network