CI01000001_09400828_09406357 (HNF4A)


Basic Information

Item Value
gene id CI01000001_09400828_09406357
gene name HNF4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9399031 ~ 9407223 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09400828_09406357.mRNA
ATATAAAAAAAAAAATCCATATAATTTACAGTCAAAACATAAACAAATTAATAAATAAAAGTGTATCTATTAACTATGAACTATTTATTAGGTATTTTAACATTTAATGTAGGTGTGTGTGTGTGTGTGTGTGTTTAAGTGTGTGTATGTATATATATATATTAGTGCTGTCAAATGATTAATCGTGATTAATCGCATCCAAAATAAAGATAATATACAGTCAAACCAAAATTTATTCAGACACCCTGAACATTTCATTCATTAATGCAGTAAAAAAATGGTAATAAAATATGACAGGATCTCAGAGTTACACTTTGTCAGAAAAATAATCTTAATTATGTCAGATAACACTTAAGCAAAACATGGTGAGGTCAAAGTGTCTGAATAATATTTGGTTCCAAATTTTTATCAATTTTACTGGTAATCCACTGTATGAAGAATTTTTGGGTATAATATGTCAGTTTACTTTATTTTGCTATCCTCACTTACATAAATGAACTATAGTGTCCTGCACCCACTAGTAAACATATATCAAAAATATCAAAAATGTCTGAATAATTTTTGGTTTGACTGTATGTGTGTACTATGTATTATGTATATTTAAATACACATACATGTATATATTTAAGAAATATTTGCATGTATATACTGTATATATATAATTTGTATTATATATATATATATATAATTTGTATTATATATAAATATAACCATTTTTTTCTTAAATATATACAAGAATGTGTATTTATATATACATAATATTTATACACAGTACTTTTATTTTGGATGCGATTAATCACGATTAATCGTTTGACAGCACTTTATATATATATATATACACACACCTACATTAAATGTTAAAATCTACCTAATAAATAGTTCAGTTAATAAATACATTTTTATTTATTAATGTATTTATTTTGTGAATGTAAATTGATTGATTGTGGGTGTGTATATTATTATTATATTATTATTTATTTATGAACTGTCAAAAATGCATAGAGCATAATTGTCACCACATTTTTTTACAGTGAACTTCTGGCAGCCACAGCTGCCAGTGTTTTAATGCAAATTCAAAGATATTATTTGCTGTACCAACTGCTAATTTTGCATAGTTTGATGAGAAGTAAACAATCTCTTCTGAACAACTGAAACTTGCACATGATGTGCACATGCAGAATGTTGAATGGAACAATGAGCTCTTTTACATAAAGGCCACAATTTTTACTCCGTGTGAGTTATTGCTGTTGTTTATTGTGCTAGAATTAAAAGAGATTTAGCAAACACGTAATTTGCACGTTGAAATGTGGACCATTACTCTCAATCTTATACATTCGAGTTGAATGTGAGTGATCTTTCCCTACTGTTTAAAACTGTTTAGGCAGTCATTTTTCTTGACCCCTTAAGTCTTGTTGGGGAACTCAGTTGGAAAGTATAGTGTTGAGACTGGCTATATTTTTTCTAGCAATGAATTTGAGACCACTGAGACAAAAAATTAAGACAGTGTTTGTCTCCGTCTGTGAAAAAAACAACAACTCTGATTTAGCACTACAATCATTAACACAAGGGCCATCCCACTCCAGAGTGGGGCCGTGCCTTGGGAGGAGGTCCGGACTGTCAATCACAGCAAGCCTCATCTTTGCCCTTGAGTACATGGCCCCTGTCACTCAGAGGTGTCTACCCCTCCGAGAGGAGGGGCTTGGCCTATGAGGGGGTGTCCAAACTCTGTAGAGAGGACAAGTCTTTCCCCCCAGCATCAGGTAGTTGAGAATGCGTTTGTCCAAACCACTAGTAGACATGGAGATGGCAGACTATAGCGAGGCCTTGGACCCAGCCTACACCACCCTGGAGTTTGAGAACATGCAAGTGCTTGCGATGAGCACAGACTCCTCACCAGCTGAGAGTGCCAACATGAATGCTGCCAACCACTTAGGGGCGGGCACCCTATGTGCCATCTGTGGGGACCGGGCCACAGGAAAGCACTACGGAGCCTCCAGCTGTGACGGATGCAAGGGGTTCTTCAGACGCAGTGTACGCAAAAACCACATGTACTCCTGCAGGTTCAACAGACAATGCATAGTGGACAAAGACAAGAGAAATCAGTGCCGGTACTGCAGACTAAAGAAATGTTTTCGAGCTGGGATGAAGAAGGAAGCTGTGCAGAATGAAAGAGACAGGATTAGCACCAGAAGATCCAGCTATGAAGACAGCAGCTTACCCTCCATAAATGCACTCATTCAGGCCGATGTCCTTTCTAGACAGATCTCATCACCAGGTCCTATCATGAACGGTGACATCAGAACGAAGAAGGTAGCCACGATAACCGATGTGTGCGAGTCTATGAAACAACAGCTGCTGGTGCTGGTGGAATGGGCCAAATACATCCCTGCATTCTGTGACCTCCCACTGGATGATCAGGTGGCTTTACTGCGAGCTCACGCTGGAGAGCATCTCTTACTAGGAGCTGCCAAACGCTCCATGCTGTATAAGGATATTTTACTATTAGGTAATGATCATATAGTTCCTCGAAACTGCCCCGAATTGGAGGTGAGCCGTGTGGCTGTAAGAATCCTTGACGAATTAGTCCTTCCCTTCCAAGATCTCCAGATCGATGACAATGAATATGCCTGCTTGAAGGCCATTGTATTTTTTGATCCAGATGCCAAAGGTTTAAGCGACCCAAGCAAGATCAAACGTATGCGATACCAAGTTCAAGTTAGTTTGGAGGACTACATCAATGATCGTCAGTATGACTCGCGGGGACGGTTCGGCGAGCTGCTTCTTCTGTTGCCTACGCTACAGAGTATCACCTGGCAAATGATCGAGCAAATCCAGTTTGTTAAATTGTTTGGAATGGCGAAGATAGACAACCTGCTACAAGAGATGCTTCTAGGAGGTTCAGCTAATGAAGCCCCTCATTCCCATCACTCTTTACACCCACATCTGGTCCAGGAGCATCTCAGTAACAATGTCATAGTTACCACCAACATGGCCACTCCCATTCACAATGGCCAGATGTCCACTCCGGAAACTCCAATCCCATCTCCCCCCACAGCCTCAGGTTCTGATCACTACAAAATGGCACCGGGGGTTATAGCCACAGTGCCCAAGCAGCCAAGCTCCATCCCTCAACCTACCATCACTAAACAAGAGGCCATCTGAGTGCTCTAGAGAAACAAAGCTCAAGTTTTTGTTTTTAACTTGTTTTTTTTTTAATAGGCTGTATTCATTCTCATAAACATCTGACATTTATATTCACTAGCTGTTAAATTTAAAGTTTTTTGTAAGGACACTGTGAAATGTTTCAGATTTTCCCATTGTAAGAACTTTAAAGCAAAATAATTGAGCTTAACGGTGTGCAACAATCACACTTTAAATATATATGTTCATACCATCTCATCTGTTTGCTGTATGTATGTTTAAAACGAACTAGTGGTGCATATTTATACTACCCAAGGGGTCACAACAGCATTCAAAAAGTCAGAAAGGACCATATAATACAAAGGCTATGCAAGTTTCTTCTCCTTTCAGTGAGTTTGATTTCCATAAATGTTACAGCAGGCCTGAATGTGATCAGATGTTTGTTTTATTGTACAGTATTTTAACAGCTTGCTACAAATGACTGGCTCTTATAGTACTTTTACAGTAGCCTTATAGAATACATAACATTTTGTGCCTTGGAAATATTGTTATTTACCAAAATGCTGGTAATTATTTTATGTATGCTAAGAGTATGTGCATTTCATATTTTTCTGTATGTGCCATACTTAAATTGTAAATATAATGATTTCCTTTTTTCATAAATGGATTTAGTCTATTCTAAGTCATGATTTTAGGATTAAAAAACATTTTTGTCTCCTGCTTAACCCCTTAACTGTGACTAGTTAGTCATGTGTATGTATGCATAGTATATTTCAGGAGAGAATGTCACACTCATTTGTAGTTTTAAATATTGGTCATTTAATACCAATTTACAATTACTGCCTTCAGTGAGAAGGATAATTTCAAACTTTTAATGTGAACTGATA

Function

symbol description
hnf4a Enables DNA-binding transcription factor activity. Acts upstream of or within pancreas regeneration; response to bacterium; and type B pancreatic cell development. Predicted to be located in nucleus. Is expressed in gut; intestinal bulb primordium; liver; pleuroperitoneal region; and yolk syncytial layer. Human ortholog(s) of this gene implicated in Fanconi renotubular syndrome 4; familial combined hyperlipidemia; hypoglycemia; maturity-onset diabetes of the young type 1; and type 2 diabetes mellitus. Orthologous to human HNF4A (hepatocyte nuclear factor 4 alpha).

NR:

description
Hnf4a protein

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG:

id description
K07292 NR2A1, HNF4A; hepatocyte nuclear factor 4-alpha

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09400828_09406357.mRNA True 4028 mRNA 0.37 10 9399031 9407223

Neighbor

gene id symbol gene type direction distance location
CI01000001_09383903_09384322 NA coding upstream 14353 9383899 ~ 9384678 (+)
CI01000001_09334528_09350703 RBMS2B coding upstream 47668 9334528 ~ 9351363 (+)
CI01000001_09308544_09311741 NA coding upstream 87020 9306701 ~ 9312011 (+)
CI01000001_09285920_09289361 NA coding upstream 109590 9285788 ~ 9289441 (+)
CI01000001_09267532_09267951 NA coding upstream 130899 9267462 ~ 9268132 (+)
CI01000001_09409294_09411908 TTPAL coding downstream 796 9408019 ~ 9412431 (+)
CI01000001_09435836_09436037 NA coding downstream 28613 9435836 ~ 9436373 (+)
CI01000001_09477768_09481888 WISP2 coding downstream 70466 9477689 ~ 9481974 (+)
CI01000001_09483845_09484834 NA coding downstream 76622 9483845 ~ 9485747 (+)
CI01000001_09491225_09507444 PFKFB1 coding downstream 83004 9490227 ~ 9508011 (+)
G17566 NA non-coding upstream 17371 9381135 ~ 9381660 (+)
G17326 NA non-coding upstream 125072 9213456 ~ 9273959 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A non-coding upstream 253476 9132867 ~ 9145555 (+)
G17581 NA non-coding downstream 66388 9473611 ~ 9473929 (+)
G17583 NA non-coding downstream 67357 9474580 ~ 9474783 (+)
G17587 NA non-coding downstream 150370 9557593 ~ 9557897 (+)
G17588 NA non-coding downstream 150928 9558151 ~ 9558420 (+)
G17594 NA non-coding downstream 160680 9567903 ~ 9568225 (+)
G17354 NA other upstream 158354 9234463 ~ 9240677 (+)
G17353 NA other upstream 170172 9216022 ~ 9228859 (+)
G17234 NA other upstream 1366548 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1858445 7531541 ~ 7540586 (+)
G15995 NA other upstream 3684080 5711885 ~ 5714951 (+)
G18896 NA other downstream 832677 10239900 ~ 10241492 (+)
G18873 NA other downstream 849889 10223879 ~ 10260714 (+)
G18872 NA other downstream 863923 10271146 ~ 10281369 (+)
CI01000001_10395420_10396473 NA other downstream 986334 10394851 ~ 10396705 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location