CI01000001_09409294_09411908 (TTPAL)


Basic Information

Item Value
gene id CI01000001_09409294_09411908
gene name TTPAL
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9408019 ~ 9412431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09409294_09411908.mRNA
ATATAAAAAAGGTAAAAGTACATTTTTATAACAAAGAGCAAGTCAATGAATTTTGCAATTATGCCATCGACCAAGGAAAGTGTGAATTTTTGCCATTTTAGCTTTGTGCAGGTTGCCCGAACACCGAACACTCACTCTGTCTGCTGTTATTGGCCAAAAATCCATAGCCCCGCCCCAAAACTCACGCCATTGGGTGAGGCAGTGTTGTGATGTCTGGATCCTCAAACAAACCGAGCAATGCTTTGATAGCGATAGAGCCACAGTGTTTATATATATAAAGGTAACTCAGACTGCTGATTTCTTACCTATAATTGCCTCTACATATTAAGCTGAGATATCTAAATGTTTTACATCGTATAAATGACAGACTTCAGCTTTAAGGGAAAAGGGACTTTGGGGAAACATTCGTTTCTGGCGTCATACGTCACATGATAGAGCGTGACCAATGGTAGAACGGCTTCGCCCTCTACACGGAACTGATTGCGGATTTCTTTGGCAGGTTGGTTATGTTCACTGTTTGATTTCTGTTCGGTTTATGTGAAGAGCATCACATTTTCAATGCTTAAAAAGCGTTACATTTCCTCATTCAGAATTTTAAAGCATTATACCTGGCTTTCATATATTCAATTCCAGTGCTGCATTAGCGTTAGAAACAAACTCATTGTGTTTAGCTATGGATCTGACATCAGTTATTAAAAATATTTTTTGTTTTCTTGTGCATGTGATAGATAGTACAGTTATTGTTTAAGCATATGAATCCAACTACAGTTGTTCTTAATAAAAGGACTTGCTACATAATAATACCATGATGATCATAAAAAAGAAAAGAAAAAAAAAGATTGATTTTCACACTAGCTGTATATATTAAAATATAATAGGAAATACAAAATAGTTATAAAATAGCTTAACATATAATGCAGGTTCCAAAAAGTGTAGTGAATTACTTTAAGCTGAATCAACATAAATTAAAAATAGGTATTTGTTTTCTATTTATTGTACATTTTCTATTGTTTTGGCATTGAGCAATTTTGCAACATTGTTTAAAATTAGATAAAATTGTGAAAAAGATTTCAGTGGACCCACAGTAAATGTATACATTTCAAATACAATGCAATACAAATATAAAATACATTTGGTGAAAGAAAAGATAAAAAATGTAATCCTCAAAATGAATTTGTACCCCTTCTGAACAATAGTGCTTGATTGTATTTTCTAAATGAAAACCCATAAACTGCTCCATGTCTGTCATTTACATGTGTCCATATTTAATAGTCCATGGCAGACCAAAATGGTCACATTGATGTTGGCCCTCCAAGGGAAGCTGTGGCGGGTGTAGGCTTCCCTGCTCCTCCCCCACCCATCTACGCCTGCACCCTTACTCCTGAACTGGTGGCCAAGGCACGGGAAGAGCTCCAGGAGAAGCCTGAATGGAGGCTCCGGGATGTCCAGGCATTACGAGATATGATACTAAAAGACCACCCTAATCTGAGGACACGGTTAGACGATGCATTTCTGCTGCGCTTCCTCAGGGCCAGAAAGTTTGATTATGACCGGGCCCTTCAGCTTCTTCTGAATTATCATGCCAATCGGAAAGCCTGGCCTGAAGTGTTCCAGGACCTGAAGCCCTCTACGGTAAAGCACGTCCTAGACCTGGGTTTTCTCACTGTCCTTCCCAGACCAGACCCTCATGGACGCTACATACTGTGTTTACGGCCAGGTAAATGGAAGCCTAATGATTACCCATTTGTGGACAACATTCGAGCTATTTATTTGACATTAGAGAAGCTGATTCAGCCTGAGGAAACCCAAGTGAATGGAATTGTTATCCTGGTGGATTATGGGGGAGTTGGCCTCTCTCAAGCCTCTAATCCAGGTCCACTTTTGGCCAAGAAAGTTGTTGGTATCCTTCAAGATGGCTTCCCAATCAGAATAAAGGCTGTAAACATTATAAATGAACCACGTATCTTCAAGGGTATTTTTGCGATAATTAAGCCATTTCTGAAAGAGAAAATGGCAGAGAGGTATGTCCTGCATGGCTCAGACTTGGCCTCTCTCCATCGAGTCATTCCTCAATCTGTGCTGCCTCAAGAGTATGGAGGAGTGGCTGGAAGACTTGACATGTCTGCCTGGTCCAGAACGCTGCTGGAGGCTGAGGAAGAGTTTGTGGTGGAGTTCTGTCAGCCTGATCCTCTGGAGGGCGTCATTCTGCCAGACTCCATGCTGTTTGAGGGAGAGCAAGCTGGCGCACATGGAGAGGACTCCTTCAGACATCTGCGTTCCCAGCTTTATTATTGTTACTGACCTCCAGGCAATGTGCAACTGTTTTTTTTAAAACATTTGTTTAGCTATGACCAACTATGTATTCTATTCACAGTGTGATGAGGTCACCGGGTCAGTCTGACCGTTTAAAAGATCTGGTACAGACAGCCATTTAGATGCTGGATATATACTCATTGCTTTGGCTTAACCTGTGTTTTAAAAACTTGATTCAGAATCATTTTTAGATTATAATACTCAATAGCCATCCAATCAATATCCTTTTGAGAAGGATCCCTGTTTTAATATATAATCAGTTTGTATTTGTTTTCAGTTGTACAGTGAGCATTGAAATGTCTAAAATAGTTATTTTCAGAGCTACATCATTTTATGTTACATCTCATATAATGCCTTAATTTATGGTGAAGGGAATATCATTTATATTTATTTAGATTATTTATATAGTACACGGAGATAACCACACATGTCAATTAAATACAATGCAATAACAATGTGCATTTTTAAATTTATAAGCCTCAGTACAGAGAATTATTTTATCCTACAGAGA

Function

symbol description
ttpal Predicted to enable phosphatidylinositol bisphosphate binding activity. Orthologous to human TTPAL (alpha tocopherol transfer protein like).

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09409294_09411908.mRNA True 2824 mRNA 0.39 4 9408019 9412431

Neighbor

gene id symbol gene type direction distance location
CI01000001_09400828_09406357 HNF4A coding upstream 796 9399031 ~ 9407223 (+)
CI01000001_09383903_09384322 NA coding upstream 23341 9383899 ~ 9384678 (+)
CI01000001_09334528_09350703 RBMS2B coding upstream 56656 9334528 ~ 9351363 (+)
CI01000001_09308544_09311741 NA coding upstream 96008 9306701 ~ 9312011 (+)
CI01000001_09285920_09289361 NA coding upstream 118578 9285788 ~ 9289441 (+)
CI01000001_09435836_09436037 NA coding downstream 23405 9435836 ~ 9436373 (+)
CI01000001_09477768_09481888 WISP2 coding downstream 65258 9477689 ~ 9481974 (+)
CI01000001_09483845_09484834 NA coding downstream 71414 9483845 ~ 9485747 (+)
CI01000001_09491225_09507444 PFKFB1 coding downstream 77796 9490227 ~ 9508011 (+)
CI01000001_09509892_09522047 NA coding downstream 97461 9509892 ~ 9523081 (+)
G17566 NA non-coding upstream 26359 9381135 ~ 9381660 (+)
G17326 NA non-coding upstream 134060 9213456 ~ 9273959 (+)
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A non-coding upstream 262464 9132867 ~ 9145555 (+)
G17581 NA non-coding downstream 61180 9473611 ~ 9473929 (+)
G17583 NA non-coding downstream 62149 9474580 ~ 9474783 (+)
G17587 NA non-coding downstream 145162 9557593 ~ 9557897 (+)
G17588 NA non-coding downstream 145720 9558151 ~ 9558420 (+)
G17594 NA non-coding downstream 155472 9567903 ~ 9568225 (+)
G17354 NA other upstream 167342 9234463 ~ 9240677 (+)
G17353 NA other upstream 179160 9216022 ~ 9228859 (+)
G17234 NA other upstream 1375536 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1867433 7531541 ~ 7540586 (+)
G15995 NA other upstream 3693068 5711885 ~ 5714951 (+)
G18896 NA other downstream 827469 10239900 ~ 10241492 (+)
G18873 NA other downstream 844681 10223879 ~ 10260714 (+)
G18872 NA other downstream 858715 10271146 ~ 10281369 (+)
CI01000001_10395420_10396473 NA other downstream 981126 10394851 ~ 10396705 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location