RNA id: CI01000001_09409294_09411908.mRNA


Basic Information

Item Value
RNA id CI01000001_09409294_09411908.mRNA
length 2824
RNA type mRNA
GC content 0.39
exon number 4
gene id CI01000001_09409294_09411908
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9408019 ~ 9412431 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAAAGGTAAAAGTACATTTTTATAACAAAGAGCAAGTCAATGAATTTTGCAATTATGCCATCGACCAAGGAAAGTGTGAATTTTTGCCATTTTAGCTTTGTGCAGGTTGCCCGAACACCGAACACTCACTCTGTCTGCTGTTATTGGCCAAAAATCCATAGCCCCGCCCCAAAACTCACGCCATTGGGTGAGGCAGTGTTGTGATGTCTGGATCCTCAAACAAACCGAGCAATGCTTTGATAGCGATAGAGCCACAGTGTTTATATATATAAAGGTAACTCAGACTGCTGATTTCTTACCTATAATTGCCTCTACATATTAAGCTGAGATATCTAAATGTTTTACATCGTATAAATGACAGACTTCAGCTTTAAGGGAAAAGGGACTTTGGGGAAACATTCGTTTCTGGCGTCATACGTCACATGATAGAGCGTGACCAATGGTAGAACGGCTTCGCCCTCTACACGGAACTGATTGCGGATTTCTTTGGCAGGTTGGTTATGTTCACTGTTTGATTTCTGTTCGGTTTATGTGAAGAGCATCACATTTTCAATGCTTAAAAAGCGTTACATTTCCTCATTCAGAATTTTAAAGCATTATACCTGGCTTTCATATATTCAATTCCAGTGCTGCATTAGCGTTAGAAACAAACTCATTGTGTTTAGCTATGGATCTGACATCAGTTATTAAAAATATTTTTTGTTTTCTTGTGCATGTGATAGATAGTACAGTTATTGTTTAAGCATATGAATCCAACTACAGTTGTTCTTAATAAAAGGACTTGCTACATAATAATACCATGATGATCATAAAAAAGAAAAGAAAAAAAAAGATTGATTTTCACACTAGCTGTATATATTAAAATATAATAGGAAATACAAAATAGTTATAAAATAGCTTAACATATAATGCAGGTTCCAAAAAGTGTAGTGAATTACTTTAAGCTGAATCAACATAAATTAAAAATAGGTATTTGTTTTCTATTTATTGTACATTTTCTATTGTTTTGGCATTGAGCAATTTTGCAACATTGTTTAAAATTAGATAAAATTGTGAAAAAGATTTCAGTGGACCCACAGTAAATGTATACATTTCAAATACAATGCAATACAAATATAAAATACATTTGGTGAAAGAAAAGATAAAAAATGTAATCCTCAAAATGAATTTGTACCCCTTCTGAACAATAGTGCTTGATTGTATTTTCTAAATGAAAACCCATAAACTGCTCCATGTCTGTCATTTACATGTGTCCATATTTAATAGTCCATGGCAGACCAAAATGGTCACATTGATGTTGGCCCTCCAAGGGAAGCTGTGGCGGGTGTAGGCTTCCCTGCTCCTCCCCCACCCATCTACGCCTGCACCCTTACTCCTGAACTGGTGGCCAAGGCACGGGAAGAGCTCCAGGAGAAGCCTGAATGGAGGCTCCGGGATGTCCAGGCATTACGAGATATGATACTAAAAGACCACCCTAATCTGAGGACACGGTTAGACGATGCATTTCTGCTGCGCTTCCTCAGGGCCAGAAAGTTTGATTATGACCGGGCCCTTCAGCTTCTTCTGAATTATCATGCCAATCGGAAAGCCTGGCCTGAAGTGTTCCAGGACCTGAAGCCCTCTACGGTAAAGCACGTCCTAGACCTGGGTTTTCTCACTGTCCTTCCCAGACCAGACCCTCATGGACGCTACATACTGTGTTTACGGCCAGGTAAATGGAAGCCTAATGATTACCCATTTGTGGACAACATTCGAGCTATTTATTTGACATTAGAGAAGCTGATTCAGCCTGAGGAAACCCAAGTGAATGGAATTGTTATCCTGGTGGATTATGGGGGAGTTGGCCTCTCTCAAGCCTCTAATCCAGGTCCACTTTTGGCCAAGAAAGTTGTTGGTATCCTTCAAGATGGCTTCCCAATCAGAATAAAGGCTGTAAACATTATAAATGAACCACGTATCTTCAAGGGTATTTTTGCGATAATTAAGCCATTTCTGAAAGAGAAAATGGCAGAGAGGTATGTCCTGCATGGCTCAGACTTGGCCTCTCTCCATCGAGTCATTCCTCAATCTGTGCTGCCTCAAGAGTATGGAGGAGTGGCTGGAAGACTTGACATGTCTGCCTGGTCCAGAACGCTGCTGGAGGCTGAGGAAGAGTTTGTGGTGGAGTTCTGTCAGCCTGATCCTCTGGAGGGCGTCATTCTGCCAGACTCCATGCTGTTTGAGGGAGAGCAAGCTGGCGCACATGGAGAGGACTCCTTCAGACATCTGCGTTCCCAGCTTTATTATTGTTACTGACCTCCAGGCAATGTGCAACTGTTTTTTTTAAAACATTTGTTTAGCTATGACCAACTATGTATTCTATTCACAGTGTGATGAGGTCACCGGGTCAGTCTGACCGTTTAAAAGATCTGGTACAGACAGCCATTTAGATGCTGGATATATACTCATTGCTTTGGCTTAACCTGTGTTTTAAAAACTTGATTCAGAATCATTTTTAGATTATAATACTCAATAGCCATCCAATCAATATCCTTTTGAGAAGGATCCCTGTTTTAATATATAATCAGTTTGTATTTGTTTTCAGTTGTACAGTGAGCATTGAAATGTCTAAAATAGTTATTTTCAGAGCTACATCATTTTATGTTACATCTCATATAATGCCTTAATTTATGGTGAAGGGAATATCATTTATATTTATTTAGATTATTTATATAGTACACGGAGATAACCACACATGTCAATTAAATACAATGCAATAACAATGTGCATTTTTAAATTTATAAGCCTCAGTACAGAGAATTATTTTATCCTACAGAGA

Function

GO:

id name namespace
GO:0005215 transporter activity molecular_function

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19514 lncRNA upstream 23379 9383899 ~ 9384640 (+) True CI01000001_09383903_09384322
TU19694 lncRNA upstream 26359 9381135 ~ 9381660 (+) True G17566
TU19474 lncRNA upstream 96425 9264516 ~ 9291390 (+) True G17349
TU19451 lncRNA upstream 134060 9213456 ~ 9273959 (+) True G17326
TU19443 lncRNA upstream 262464 9144411 ~ 9145555 (+) True CI01000001_09132867_09145278
TU19709 lncRNA downstream 61180 9473611 ~ 9473929 (+) True G17581
TU19711 lncRNA downstream 62149 9474580 ~ 9474783 (+) True G17583
TU19715 lncRNA downstream 145162 9557593 ~ 9557897 (+) True G17587
TU19716 lncRNA downstream 145720 9558151 ~ 9558420 (+) True G17588
TU19722 lncRNA downstream 155472 9567903 ~ 9568225 (+) True G17594
CI01000001_09400828_09406357.mRNA mRNA upstream 796 9399031 ~ 9407223 (+) True CI01000001_09400828_09406357
CI01000001_09383903_09384322.mRNA mRNA upstream 23341 9383903 ~ 9384678 (+) False CI01000001_09383903_09384322
CI01000001_09334528_09350703.mRNA mRNA upstream 56656 9334528 ~ 9351363 (+) True CI01000001_09334528_09350703
CI01000001_09308544_09311741.mRNA mRNA upstream 96008 9306701 ~ 9312011 (+) False CI01000001_09308544_09311741
CI01000001_09285920_09289361.mRNA mRNA upstream 118578 9285788 ~ 9289441 (+) True CI01000001_09285920_09289361
CI01000001_09435836_09436037.mRNA mRNA downstream 23405 9435836 ~ 9436373 (+) False CI01000001_09435836_09436037
CI01000001_09477768_09481888.mRNA mRNA downstream 65258 9477689 ~ 9481974 (+) True CI01000001_09477768_09481888
CI01000001_09483845_09484834.mRNA mRNA downstream 71414 9483845 ~ 9485747 (+) True CI01000001_09483845_09484834
CI01000001_09491225_09507444.mRNA mRNA downstream 77796 9490227 ~ 9508011 (+) True CI01000001_09491225_09507444
CI01000001_09509892_09522047.mRNA mRNA downstream 97461 9509892 ~ 9523081 (+) True CI01000001_09509892_09522047
TU19479 other upstream 167342 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 179160 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 1375536 8032124 ~ 8032483 (+) True G17234
TU19037 other upstream 1867433 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19459 other downstream 5897 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 827469 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 844681 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 858715 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 981126 10393557 ~ 10395953 (+) True G18875

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00043092 False 2972 mRNA 0.38 5 NC_007134.7 25868637 ~ 25874877 (+)