RNA id: CI01000001_09308544_09311741.mRNA


Basic Information

Item Value
RNA id CI01000001_09308544_09311741.mRNA
length 2554
RNA type mRNA
GC content 0.36
exon number 4
gene id CI01000001_09308544_09311741
representative False

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9306701 ~ 9312011 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATATAAAAACCCCAAAGCTAACTAATAACACTAGACTGTGCTGAGAAATTTAACAGCCTTAAAAGCTTTTAAATGATACCAGTTTGCTCATTAACTTTGGTAGCCCTAAAATAAAGTTGTTATTCTCAACTAAAACTATTACAAATGGTATTTGTCAATTGAAATAAAGCTAAAATTAAAGCTGCAGTCTGTAAGTTTTGCCTCTTTGTCACCATCTCTGTTTGAAACCTGCAATTGCAGTTACTTGCGGAATTATCATCTTTACGTGGGTTGTGCAACAGCACGGCTCCTCAGCACAGATTAATCTAATGCTTTAAGGAGAATGTTTGCTGTCAGTCACCGCACCGGCGGATACTGTACTTCAAAATCACAGACTGTAGTCTTGAAAGTATGACTAAAATAAGAATTTTCACCGGAAAATGTCATCTGAACAAATAAGTAACAAATCTGCCACTTTTGTTCTGACCAACTGAGGAAAAAAGCATTACAATAAATCGCGCTAAATCTAACGATCGCTTAGCTTATATCACATAAAACCGTGCAAATTATTATTATTGCTATACTTTGTTCTCAAATTGTTAATGTTAACAACATTAGCATTGCATGACTACGTGTATTTAGTGTGTATTAACGTTACCTGTAGATTTCAATTTCTGTTTAGTCTAATCTCTATTTGTCTATTTGTCATAAGAGGATTGTAGAAACCTCCGGAGTATCTGAACCACAAAGACAGGTGTGTACTTAAGATAATGCACTAATCTCTAATTGTCTATTTGTCATACCATACAATCCGCCATAAAAATGATAGGTTTAATTATTCCAGCTGGGACTCGTCCTTTATGTAAACAGACTTGATGTAATGACGCGAAGATGAACGGCAGCAAGCTCGAATTTCCCGTGGAAACCTACCAGTACCACTCGAATTACAAAACATTTTTACAAGCTTACCGTTGTGAATCTGGCTAAGGTAAGGAGATAGTTTTGAACACTGGCTGGTTATGCACTTGTTCAAAAATTGATTTTGGATCTTTTTTAACCAAAAAAAATAAAGTTACAGACTGCATCTTTAAATAAAAATATTAGATGAACAACTTAAATGTAAAAAAATTTTGTCTTGGCAACTAACTGAAATAAAATAATTATAATTTAAAGTACTAAAATTACTAAAACTAAATATGAAATAAAAACAAATGAAAGCTAAATAGAAATATATATATATATAAAAAACACTAATAAAATGATAAACCCACATACAATTACTTAAACTTCTACTAAAATTAAAGTGAAAACTGAAAATAAAAGCTAATTCAAAATATTATAAATCCTAAAAATTACTAAAAATAAAATAGAAACTTAAAATTAAATTAGAAACTAAAATTAATAACTATGAATGGAAAATTTGTGAATACTAATAAAAACAAAATTGAAAAGTTTAAAAAAACTCAATTAAAAAAAATCATATTTACATTCCTGTATTTACAGGCATGTTCTAAAGCAGAAAAACTGGTCTACTCCGACACTGAAAAAGCATCAGTTCTCCTGTTCCAACAGTGATCCACGCAAAGCCATGAGTTTCTGCTGTAGTCATTGACAGTAGACTGATTCCAGCTCGGGCCCACTCACCACCTACGCCTGAACCACTGCAAGGGTCACTCTGCATTTCATGAAGCCAAATGCTAACATGTACATTAAATCAGTGCTTAGCATCACATGCCAAAATGTGATCTAATACTGAGGCAATGCCTCTGCAGATACATACTCCCAATCCTGCAAGCCAAGCCCGGTTGCTAATGGCCTGCTTTCCTATTCCTCCCCTGAAGTTACTTATATGATGTCTAGAATAATGGCTTTCCTCTATCCAGATGTTCCAGAGAGGATGGAGGTGGAGCAAGTTAATACAACACAAGAACCTCAACCCTGCCTCTGTCCGCCAGACCATTTCCTTCTCGTTTTCCACAGAGCAGACAAACTCCAGCTAAACCTATTATCAGAGCTCAGCAGAGGCGACTCATCTGCGACAAGTCAAAATCATCTGACAGGCCGTCTGAGACTGTCTCCCAAATGCATGCATGGACAAAATAACACGTTTAATCGTGGTTACTCACCTTCAATGGCTCTGGTGGGATCTGGAACCTCTATTGCAAAAACTAATCCCAGTGAGGGGGAAAAAGTGGAGCCTCTACTGGACTGCTGCATGACGTCACCCACTCGACAGGAGTCCAAAAAACTGAAAGCCCTACGCGGCACTGGGCTGCTGCGCATGCGCGGCTCAGCTTACGGCTGACCATTTGTTTTCCCCCTCATTGGGTGGAAACTGATGCCGCCACGCAGCCATCTTGGCTCTTTCTTTATGGCTCATAGTAATTAATTTGTATTAACTGACTAGCCTGTTTTTGGCTGGATAATTTTTGCAATTAAATGATGAAGTTTTAAAATTCACACGTGTATTACTTTAATTTGTATTGTATGTTTTTCTTCAGCATCAATGATAAACATGATATGATGGATGAAGAAACAGAGTAAAACCTACTACTTATATGTAGCGTAAATAGTA

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19451 lncRNA upstream 32742 9213456 ~ 9273959 (+) True G17326
TU19443 lncRNA upstream 161146 9144411 ~ 9145555 (+) True CI01000001_09132867_09145278
TU19635 lncRNA upstream 162867 9143361 ~ 9143834 (+) True G17507
TU19513 lncRNA upstream 215316 9088542 ~ 9091385 (+) True G17388
TU19510 lncRNA upstream 277750 9028681 ~ 9028951 (+) True G17385
TU19694 lncRNA downstream 69124 9381135 ~ 9381660 (+) True G17566
TU19514 lncRNA downstream 71888 9383899 ~ 9384640 (+) True CI01000001_09383903_09384322
TU19709 lncRNA downstream 161600 9473611 ~ 9473929 (+) True G17581
TU19711 lncRNA downstream 162569 9474580 ~ 9474783 (+) True G17583
TU19715 lncRNA downstream 245582 9557593 ~ 9557897 (+) True G17587
CI01000001_09285920_09289361.mRNA mRNA upstream 17260 9285788 ~ 9289441 (+) True CI01000001_09285920_09289361
CI01000001_09267532_09267951.mRNA mRNA upstream 38569 9267462 ~ 9268132 (+) True CI01000001_09267532_09267951
CI01000001_09226223_09227218.mRNA mRNA upstream 79455 9226089 ~ 9227246 (+) True CI01000001_09226223_09227218
CI01000001_09186450_09203866.mRNA mRNA upstream 102835 9186333 ~ 9203866 (+) True CI01000001_09186450_09203866
CI01000001_09164619_09166621.mRNA mRNA upstream 139976 9164541 ~ 9166725 (+) True CI01000001_09164619_09166621
CI01000001_09334528_09350703.mRNA mRNA downstream 22517 9334528 ~ 9351363 (+) True CI01000001_09334528_09350703
CI01000001_09383903_09384322.mRNA mRNA downstream 71892 9383903 ~ 9384678 (+) False CI01000001_09383903_09384322
CI01000001_09400828_09406357.mRNA mRNA downstream 87020 9399031 ~ 9407223 (+) True CI01000001_09400828_09406357
CI01000001_09409294_09411908.mRNA mRNA downstream 96008 9408019 ~ 9412431 (+) True CI01000001_09409294_09411908
CI01000001_09435836_09436037.mRNA mRNA downstream 123825 9435836 ~ 9436373 (+) False CI01000001_09435836_09436037
TU19479 other upstream 66024 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 77842 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 1274218 8032124 ~ 8032483 (+) True G17234
TU19037 other upstream 1766115 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19459 other downstream 106317 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 927889 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 945101 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 959135 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 1081546 10393557 ~ 10395953 (+) True G18875

Expression Profile