RNA id: TU19514


Basic Information

Item Value
RNA id TU19514
length 595
lncRNA type sense_over
GC content 0.35
exon number 2
gene id CI01000001_09383903_09384322
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9383899 ~ 9384678 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

TCAGATGGTGTGGGCCACCAGCAATAAGATCGGATGTGCTGTCAGAAGATGTTCAAACATATATGTGTTTGGGAGTACATGGAAACAGGCCACCTTACTGGTTTGCAACTATTCTATCAAGGGGAACTGGGTAGGAGAGGCTCCATATAAGACAGGAAAACCGTGCTCTGCATGTCCCTCAAGCTATGGAGGATCATGCAGTAAAAACCAGTGTGACTCCAGATCAAAATCCAGAAGAAATGCAAGTGGTTTCAGAGGATTAAAAAAATACCTTTAAAAATCTCTAAAAAATAATTTTATTTTATTAAAAATGTTATATAATAGAAACCACTAAAATGTAAATTTCACAATGCAAATTATTCCGTGGTCATTTTATAAAACTTAAGTGCTGTAAAATGTCCAATTAATCAAATGTGTAAATTCTTCTTGTGTTTATCATCACCCCATAGTTGTCAATTTTTTTTATTACTTTATTAAGTTGTTTAATGTTCTCCATTTGTTGTTCAAGGCTATGGACTATTTTGCACTGTTTTACTTATAATTTGTTTTTACTAAGTGGCATCGCAGTGACAATTCGCATCGGGAGTTAAGCACT

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU19694 lncRNA upstream 2239 9381135 ~ 9381660 (+) True G17566
TU19474 lncRNA upstream 72305 9264516 ~ 9291390 (+) True G17349
TU19451 lncRNA upstream 109940 9213456 ~ 9273959 (+) True G17326
TU19443 lncRNA upstream 238344 9144411 ~ 9145555 (+) True CI01000001_09132867_09145278
TU19635 lncRNA upstream 240065 9143361 ~ 9143834 (+) True G17507
TU19709 lncRNA downstream 88971 9473611 ~ 9473929 (+) True G17581
TU19711 lncRNA downstream 89940 9474580 ~ 9474783 (+) True G17583
TU19715 lncRNA downstream 172953 9557593 ~ 9557897 (+) True G17587
TU19716 lncRNA downstream 173511 9558151 ~ 9558420 (+) True G17588
TU19722 lncRNA downstream 183263 9567903 ~ 9568225 (+) True G17594
CI01000001_09334528_09350703.mRNA mRNA upstream 32536 9334528 ~ 9351363 (+) True CI01000001_09334528_09350703
CI01000001_09308544_09311741.mRNA mRNA upstream 71888 9306701 ~ 9312011 (+) False CI01000001_09308544_09311741
CI01000001_09285920_09289361.mRNA mRNA upstream 94458 9285788 ~ 9289441 (+) True CI01000001_09285920_09289361
CI01000001_09267532_09267951.mRNA mRNA upstream 115767 9267462 ~ 9268132 (+) True CI01000001_09267532_09267951
CI01000001_09226223_09227218.mRNA mRNA upstream 156653 9226089 ~ 9227246 (+) True CI01000001_09226223_09227218
CI01000001_09400828_09406357.mRNA mRNA downstream 14391 9399031 ~ 9407223 (+) True CI01000001_09400828_09406357
CI01000001_09409294_09411908.mRNA mRNA downstream 23379 9408019 ~ 9412431 (+) True CI01000001_09409294_09411908
CI01000001_09435836_09436037.mRNA mRNA downstream 51196 9435836 ~ 9436373 (+) False CI01000001_09435836_09436037
CI01000001_09477768_09481888.mRNA mRNA downstream 93049 9477689 ~ 9481974 (+) True CI01000001_09477768_09481888
CI01000001_09483845_09484834.mRNA mRNA downstream 99205 9483845 ~ 9485747 (+) True CI01000001_09483845_09484834
TU19479 other upstream 143222 9234463 ~ 9240677 (+) True G17354
TU19478 other upstream 155040 9216022 ~ 9228859 (+) True G17353
TU19348 other upstream 1351416 8032124 ~ 8032483 (+) True G17234
TU19037 other upstream 1843313 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19459 other downstream 33688 9418328 ~ 9438063 (+) True G17334
TU21219 other downstream 855260 10239900 ~ 10241492 (+) True G18896
TU21190 other downstream 872472 10257112 ~ 10260714 (+) True G18873
TU21188 other downstream 886506 10271146 ~ 10281369 (+) True G18872
TU21193 other downstream 1008917 10393557 ~ 10395953 (+) True G18875

Expression Profile