CI01000001_09147684_09162673 (ESYT1A)


Basic Information

Item Value
gene id CI01000001_09147684_09162673
gene name ESYT1A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 9147684 ~ 9163215 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_09147684_09162673.mRNA
ATGTCATCTGATGATGCAGAGCCGAGAGCGGGTGTCTCTCCGGAGGCTGCGGACTCGGCCCTACCCCACGATTCCGCTGGAAAGCACGCCGTGTCAGTTCTCTGGTCCTTTGGAAAGTGCGTCGGTGCCTTACTGCCAGTATACCTGGCTGGATATTTCGGATTCAGTATCAGTTTAGTTTTGCTCGGTCTTCTGGTGTATACGGGATGGAAACACAGTCGCGATGGAAAACAAACGCGACTGCAAAGCGCGATGTATGTTTTGGAGAATGAGCAGGATGTAATACCAACACGGGTGTTTAAAAGTAAACGGGAATTGCCGGCATGGGTGAACTTCCCTGATGTGGAAAAGGTTGAATGGATGAACAAGATATTGCAACAGGCCTGGCCGTTTATTGGACAATATCTGGAAAAGCTGCTGGTGGAGACTATTGCCCCTTCGATCCGAGCCGCCAGCACTCATCTGCAAACTCTCACCTTCACCAAAGTTGACTTGGGCGACAGGGCTATGAAGGTAGTTGGGGTGAAGGCCTACACTGAGTATGATAAACGTCAGGTGATATTGGATCTTTACATCAGTTATGCTGGAGATGTGGAGATTAACGTTGAGGTGAAGAAGTACTTCTGTAAAGCTGGAGTCAAAGGCATTCAGCTCCATGGAAAATTGAGGGTGATCTTGGAACCTCTAATTGGAGATGTTCCTCTTGTTGGAGCCATCACCATGTTCTTCATTCGCAGACCGAAACTTGACATCAACTGGACTGGCCTCACCAATTTATTAGACATACCTGGTTTGAATGCCATGTCGGACACTATGATAATGGATGCAATCGCCTCTTTCCTGGTTCTCCCCAATCGTCTCACTGTTCCTTTGGTGGCCAACCTGCACGTAGCACAGCTGCGTTCCCCTCTGCCACGGGGTATTGTGCGTATCCACTTGCTGGAGGCAGAAAACCTTGCTGCCAAGGATAACTACATGAAAGGCATAATATCTGGAAAGTCTGACCCGTATGCAGTGCTACGGGTGGGAACGCAGACCTTCACCTCCCACCACGTGGACAACAACCTTAATCCTCAGTGGAGGGAGATGTACGAGTGGTACACTTTAAAGGATGCAACATCAGGTCAGGTTCATCTCAAGCTAGAATGGCTCTCTCTGCTGCCCTCTGCAGAGCGCCTTAATGAAGTGCTGGAGAGGAATCAAAACATTATGATATCTGGCAAGACAGCAGATCCTCCTTCTGCTGCCATTTTAACTGTTTATCTGGACCGGGCACAAGATCTACCGTTTAAAAAAGGTAATAAGGACCCCAGTCCCATGGTGCAGGTTTCTGTGCAGGATACCACCAAAGAGAGCAGGACGGTGTATGGGACTAATAATCCGGTATGGGAGGATGCCTTTACGTTTTTTATTCAGGACCCACGCAAACAAGAAATTGACATCCAGGTGAAGGATGATGACAGGGCTTTGACTCTGGGTGCTCTGTCTATCCCCATGTCCCGTCTGCTCTCCAGCACTGAGCTCACCATGGATCAGTGGTTTCAACTAGAAAAGTCTGGACCGGCCAGCCGTATCTACATCACATTTATGCTGAGGGTGTTGTGGCTAAATGAAGAAGCCATCCTTACCTCACCCGTGTCTCCATTACCCGGAGGGGGAGATGAATCAGAAGTGTCTTCAGGGGCAACAGTGGTGACCCCCACTTCAAAACTTCCTGAGCACACTAGTCCAGACAGCAATTTTGCTTCTGAGGGTGTTCTGCGGATCCACCTAGTAGAAGCCCAGAGTCTCATCGCTAAGGACAATTTGATGGGTGGCATGGTGAAGGGAAAGAGTGATCCATATGTGAAGATCCGAGTGGGAGGAATGGCCTTTAAGAGTCAGGTCATCAAAGAGAACCTCAACCCCACCTGGAACGAACTTTATGAGGTGATCTTGACCCAGCTCCCAGGTCAGGAGGTGGAGTTTGAACTTTATGATAAAGACATCGACAAGGACGACTTCCTTGGCAGGGTTAAAGTAAGTCTCAGAGATCTCATCAGTGCTCAGTTTACTGATCAATGGTATACTCTGAATGATGTGAAGTCTGGACGAATTCATCTGGTGTTGGAATGGGTGCCTAAAGTTTCAGATCCCACTAGACTTGAACAGATTCTACATTACAACTATCGTCAGTCTTACCTGAATAAAACGGTTCCCTCTGTTGCACTGCTTTTTGTGTATATCGAGAGAGCACATGGTCTGCCTTTAAAAAAGAGCGGGAAAGAGCCAATGGTGGGAGCAGAAGTGTCACTCAAAAACGTATCCTACCGGACCAAATGGGATGAAGCTTTTTATTTCCTGATTCATAATCCAACAGAAGACACGCTTATAGTCAAACTCTCTCACAGCTGGGGTCTGGCTCTGGGTTCACTTGTGCTTCCACTGAGGGAGCTGCTGAATGAGAAGGATCTGGTGCTGGACCGCTGGTTCAGTCTGGATGGAGCCATGCCTGAGAGTCAGATTCTGTTGAGAGCTGAACTCAAGCTCCTAGACAGCAAGTTGGCACAATGTAGTGATGCGGAGGATGCTAGCCATGTCATCCCCAGTGGAGAGGCAGCTGCTGCAGCCAGTCATGAGCTCAGACACAGAAGTGTGCCCGCTCAAGGAGGTGAGGATGCCAGTTCATCCGGGAAAGCCCAGATGAAGCTCTCCATTGCCTATTCATCTGGGGAGAACCGATTGGTTATAACTGTCCATGCCTGCAGGAACTTGCCGTCCTACTCTAAGGATCCTCCAGACACTTACATCTCATTCATTCTGCTTCCGGACAAGAACCGGAACACCAAAAGGAAGACCACTGTTAAGAAGAAAAGCCTTAAACCTGAGTTCAATGAGAGATTCGATTTTGACATGTCACTTGAAGAAGCTAAGCAGAAACATCTTGAAATGTCTGTCAAGAACAGTACTTCTTTCATGAGTCGTGAAAAGGAGGTTTTTGGCAAGGTTCAGATAGACTTGAGTCAGCTGGATCTCAAGACAGGAGTATCACAGTGGTAGGTGCTATACTGTTGTTCACTGTAGATTACTCTGAGATCACAGAGTGTTTGCTTACATCTTTTCTTATTTGTATAATTTCAGGTATGACTTGTCACATGAAACCAACTGAACGGCCTTCCCATGTTGACTTTATTCACAGTCGTTTGAAGTGAAGGTCAATTTCACGGATGTTTACTTGTCCCGACACAAGCAGGGGGTCGGATTGTTCCTAAAACAGGGTGTCCTGAGTTTGATGGTGTCAGGACTAAGATTGTATCTTGCTGTGCAACTAGCTTTGACCCAAAATATAGCCTGCTTGATTCCCACCATAAATGAATAATGTTTGCACAAGAAGGCTATGAAGATGCCACCTTGAGTCAACATGACAGCATGTTGGAGAATGTTACATTACATTTTTAAGTATTTAATTTGTAGCTTTTACTTTTTATGAGTTCCTGCACTTTATGGGTCAGTGAGAATGCAGCAATGGGATGTTGGAGCTTCTGTTCAGCTGTGTTTATTACATTTCAGTGTTTATTACATTTCATTCCAACATTTCAACA

Function

symbol description
esyt1a Predicted to enable calcium ion binding activity and phospholipid binding activity. Predicted to act upstream of or within endoplasmic reticulum-plasma membrane tethering and lipid transport. Predicted to be located in plasma membrane. Predicted to be integral component of membrane. Predicted to be extrinsic component of cytoplasmic side of plasma membrane and intrinsic component of endoplasmic reticulum membrane. Orthologous to human ESYT1 (extended synaptotagmin 1).

GO:

id name namespace
GO:0016020 membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_09147684_09162673.mRNA True 3581 mRNA 0.47 28 9147684 9163215

Neighbor

gene id symbol gene type direction distance location
CI01000001_09132867_09145278 PA2G4.L, PA2G4-B, PA2G4B, PA2G4, PA2G4A coding upstream 2165 9132867 ~ 9145555 (+)
CI01000001_09113045_09130978 NA coding upstream 16362 9113045 ~ 9131322 (+)
CI01000001_09059083_09101251 NA coding upstream 46332 9058864 ~ 9101352 (+)
CI01000001_09039724_09045754 NA coding upstream 101569 9039724 ~ 9046115 (+)
CI01000001_08971649_08984224 NA coding upstream 163445 8970545 ~ 8984239 (+)
CI01000001_09164619_09166621 NA coding downstream 1326 9164541 ~ 9166725 (+)
CI01000001_09186450_09203866 FMNL3 coding downstream 23118 9186333 ~ 9203866 (+)
CI01000001_09226223_09227218 NA coding downstream 62874 9226089 ~ 9227246 (+)
CI01000001_09267532_09267951 NA coding downstream 104247 9267462 ~ 9268132 (+)
CI01000001_09285920_09289361 NA coding downstream 122573 9285788 ~ 9289441 (+)
G17507 NA non-coding upstream 3850 9143361 ~ 9143834 (+)
G17388 NA non-coding upstream 56299 9088542 ~ 9091385 (+)
G17385 NA non-coding upstream 118733 9028681 ~ 9028951 (+)
G17359 NA non-coding upstream 119165 9028111 ~ 9028519 (+)
G17326 NA non-coding downstream 50241 9213456 ~ 9273959 (+)
CI01000001_09308544_09311741 NA non-coding downstream 101301 9306701 ~ 9312011 (+)
G17566 NA non-coding downstream 217920 9381135 ~ 9381660 (+)
CI01000001_09383903_09384322 NA non-coding downstream 220684 9383899 ~ 9384678 (+)
G17581 NA non-coding downstream 310396 9473611 ~ 9473929 (+)
G17234 NA other upstream 1115201 8032124 ~ 8032483 (+)
CI01000001_07531945_07539781 NA other upstream 1607098 7531541 ~ 7540586 (+)
G15995 NA other upstream 3432733 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 3857728 5279837 ~ 5287698 (+)
G15794 NA other upstream 4082980 5061218 ~ 5064704 (+)
G17353 NA other downstream 52807 9216022 ~ 9228859 (+)
G17354 NA other downstream 71248 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 255113 9435836 ~ 9436373 (+)
G18896 NA other downstream 1076685 10239900 ~ 10241492 (+)
G18873 NA other downstream 1093897 10223879 ~ 10260714 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021706 esyt1a coding NC_007134.7 CM002907.2 25308018 ~ 25340070 (+)