RNA id: AMCG00002138


Basic Information

Item Value
RNA id AMCG00002138
length 7244
RNA type mRNA
GC content 0.54
exon number 33
gene id AMCG00002138
representative True

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 4602406 ~ 4636492 (-)
genome version AmiCal1_2021_bowfin_Genome
species bowfin
(Amia calva)

Sequence

aaaaaaatctttttcCATAAGAGAAGCTCAGAGTCCCTTTCACCCAGAACAGCTGTTCCCTTTAACTGTGGCTGAGCAGCGCTGGGTGAACAGGCCGTGCTGAAACAGCATTGTGGATTCTCTCTCCTCGGCAGACACAGCACTGTTTGTCAGGACTATAATTCCGTTTGTGGGGTTTCAGACCAGCGCTGGTAGTTTTTTTTGGGGATTCTTGGCCCAATGCCAGGGAGAGTCTAACGCTCCGGTCTGTGGAGGGGGAGTTGGGAgagaataaaaactgaaataacaggAGGAGAAAAGAGGGAGACCTTCCCATTTCCTTGAAATCATGTGACTTCTCTCCGGCAGCACACTGATTACAGAAACATGCACTTCATGGCTAAGGTTAATGAAGTTCAGCaacccttttttctttttttggtctaGTTTTTAAagtagtaaaatgttttaaaggtgtctggttgtgtttttccattgtgTCATCCATTCtataaatactttacatttcGAAAGAGGATAATTTGTCTTGTCCTGTAACTTCTTACTCATTACTCACGCCTGACAACTCCGGCCTTAacaattcagatttttaaatgGACAAATCAAGATGTTGGTCATAAAGTAATTTTTGAAGAATCgtatatttaattgcataacATTTGTCTAAAGATGCAGAAACAAGATTAATGTTTTAGCAATATTTAAATCGACAGCATAACGTTTCTGTTATCGTGCAATTaatgctgttatttttaaacgTTGCTTCACTTTCTACGTTGTTCTTTTGTAGTCTACTGCAATTTATAAAAGTATTCTTTAAAATTAACAGTttctataaatacatgcattgtatatttaattgcataacATTTATATGCCTAAAGATACAGAAACGTACATGGCATTTGTTATAAATGTGATGAAAGGAGATTTATTTATGAgttttaagaaataatttgAACCGACTTCTAAATCACACTctaaacatttttagaaaatgctTCTTGGATCCATTTAGTCTTTAGGCTGTAGGCCTGACCAACAGACAGAAGAGCTGAGTGAAATTTCCTCTTgtctgttattaatattatttctttgTAGAAAGACTTTTCAGaagatatgtttaaaaaagaaaaatctcacAGGAAAAGATACTAATAAATGAAATGGCAGGTACGTGTAGGTGGTATACATTACATTCTTATACCCTTAATAGAGTTCGAGGGACTCAGGGTTTTGGCTGCATCGTGATGGCTGTAGGCTGCGAATATTCTCAGCTGAATTCAGTGGCTGTGCCAAACGTATTACTGACATATTTTAGTGTTTGCAGCTGTTAATTCTCAAAGATGACTCTTTAGTATGACCCAACTGAATAATTGCAATTATGGcacaattaaatacagtatattaaaggCTTTGACATGCTAAGTCACAGTTCGGGGCTTCATAACACCTAGACTAGGACTTTCTGTTGTCGTCAAACCGGAAAAACTCCCATGTGATGAAACGTTAGCGGACACCAGACCTTTGCGTTCACAATCCTCCGCGCCTCAGATGGGTTCGCTTCCTGCttatatatgcatttgaatGCTTCTCTTGCTGTTTAAATTGCTGTCTTGGCTGCCTTCCCTCTTGTTCCAATGTTTCGCCTTAAGTTGACGCTGTGCCAGAGTTTTCCTTAATGTGTCGCGTCTCAGGATCTCCAGAGTGCAGGCCCCACTCGAGGACCGGATCTTCCCGACGCAGCCTGGAGTCGCCGCCGTCTACAGTGTACCTAGGCCACCTGGCCCTACCTACACAACACACGAAATCACCAAGGGACACCCTAACCTTGCGGCCACGCCGCCCGGGCACGCCTCTTCCCCAGGACTCTCTCAGTCTCCGTACACCTCTGGGCAGAATGCTGGCACCACCCCATTGGTGTATTCTCCCCCGACGCAGCCAATGAACGCACAGCCGCAGAGCCGCCCGtTTGCAACGGGTCCTCGTCCTGCCCACCATCAGttTTTCCAGAGGACCCAGATGCAAACGGCGCGCCCCACCATTCCAAGCAACAGCCCTTCCATTCGGCCGGGATCACAGACCCCCACTGCCGCCGTCTACCCCCCCAACCAGCCCATCATGATGACTATGACCCCCATGCCCTTCCCCTCGCCACAGGCAGCCCAGTACTACATACCCCAGCCGCCCTATCGACACAGCACGCCCTACGTGGGGCCCCCGCAGCAGTATTCGGTTCAGCCACCGGGCCCCAGCACCTTCTACCCTGGTCCGAGCCCTGGAGAGTTCCCCACACCGTATGGGCACCCCTACTACCAAGGGCAGACTGTGTACACCCCTTCTCCACAAATCATAGTGCCTACACCACAGCAACCTCCACCTGccaagagagagaagaaaacaATCCGGATCCGAGACCCCAACCAGGGCGGGAAGGATATCACAGAGGAGATCATGTCCGGAGGGGGGGGGAGCCGGAATCCAACCCCCCCTGTGGGGAGgccctcctccacccccacccccccccagCAGCTGAGCAGCCAGGTCCCCGATCACGGACATGTGATGTACAGTGTGGAGAACACCCAGCTCATCCCTGCGCCAGTGGACTTAAAGCCAGAGGACAAGCCAAAACTGGAGTCAGCGATTCTGAAGTCTTCATCTCCAGGGCTGCGGCTGCCAGACCCCCCTGCTGACAAAAGGGAGGCGGCCAGCCCAGTGCAGGTCCCCCCACCTCCCGAGAAACCAGAGCTTCCCGCCGCCAGCCCAGCCGTGGTCCCGAACCCAACTATGGCCCCTCCGGCACCCGTCGCCAGCCCCAACAAGCCTACGTTGGTGGTGGTGGCAAAGCCGGCCGAGCAGCCTGTCTTGAAGGAAGAGCCCAAGGAGGCTCCCTCGGTTTCCCCTCAGCCCGAGAGCTTGGACCTGGACAGGGCCCTTCCAGAACTGACCAGGAGTCTGTCTGCTTCCCCAGCGCCGGTCATCAAGGAGGTGAACGGGCTCAGCGACAAAGAGGCCACTTCCCCATGCAGCGAATCGGACTTGCCCTCCCAGGAGCCGGTGCCGCTGTCCTCTCCGCCTCAAGCTCCGCCACAGCCTCCACCTCAGCCCCTGGTCTCGAACGCCATCATGGAAGGAAAGGAACCCCCTTCCAGAGAGGTGCGGGCGGACAGCCCCCTGGTCACCCCGGCGGCGGTGCCCCTAGTTGCTGACGTGGCTGTACCTCCTGTGGCCGTGTCCCCCTCGTTTACCACCACTGCTGCTAtcactactactgctgctgctccggctccgcccccccccccaggcctCCTGGCGACCAGTCAGGCGGCAGCGGTGGTGGCCGAGGCCAGGAGACTCTCTCTGGAGTCCACAGATGCCGCCCCCAAACCCAGGCCCGAGGCAGGGGACGCTGTGTTGGAGAAACCAGACCCCCAGCTGCAAGCGAACTCCAGAAGGAGCCCCAATACAGTCGGTCTGAACTggcctgggggtgggggggcactcGAATTGCGAGGGTTATGCCGTAGGGAACGGCCCGAGCCCTGGGAGGAGCTGCTGGCGGAGAAGGCcccggagccggagccggagcccGAGCCCCGCAGCAGCCCCGCGTTGCCAGAGGCGGAGAAGAAGGCGCCCGTCCCGGAGGAGAATGGGGAGCGGGAGCCGGAGCCTGTGAGGAACGGCGCCGAACACGCCTCCGAGACCGAGAGCAGCGACAGCGGGGTCACCGCCGCGGACAAGGAGGGCTCAGCTGGGCCGGCCCCGTTCCTCTTGCGAGAAGCGGAACCCATGGACACGGAGAGCAAGAAGCAGTACGACCGCGAGTTCCTGCTGGGCTTCCAGTTCATGCCCGCCTGCGTGCAGAAACCTGAGGGTTTGCCCCCAATCAGCGATGTGGTGCTCGACAAGTGCATTGACACTACATTCTTGCAGATTAACCAAAACAAGCTGCCCATGAGGCCCCTGGACACAAGGGCCATCTCCCGAGGGCCGGACTTCACCCCCGCCTTCGCTGACTTCGGGCGGCAGGTCTCCGGAGGCCGAGGGGCAGCCCTGCTGAATGTGGGCTCCCGGCGGCCCCAGCCTCGTAAGATCATCACCAACGTGTCTGTGAACGATGAGGTGCAGCTGAAGAAGGCCGAGCACGCCTGGAAGCCCACTCTGAAGAGAGAGGTGCCGGCGGAGGTCCAGGGCGGGGGGAAAACACAGGACCTGTTTCGCAAGGTGCGCAGCATCCTGAACAAACTGACGCCGCAGATGTTCAACCAGCTGATGAAGCAGGTGACGGAGCTGACCATCGACACCGAGGAGCGCCTCAAGGGGGTCATCGACCTGGTGTTTGAGAAGGCCATTGACGAGCCCAGCTTCTCCGTGGCCTACGCCAACATGTGCCGCTGTCTGGCCACGCTCAAGGTGCCCATGGCCGATAAGCCGACCGGTACAGTGAACTTCCGCAAGCTGCTGCTCAACCGCTGCCAGAAGGAGTTCGAGAGGGACAAGGTGGATGACGTCGTGTTCGAGAGGAAGCAGAAGGAGCTGGAGTCGGCCTCCTCTTCCACCGAGCGAGACCGTCTACAGGAGGAACTGGAGGAGGCCAAGGACAAGGCGCGGCGGCGCTCCATTGGGAACATCAAGTTCATCGGGGAGCTGTTCAAGCTGAAGATGCTGACGGAGGCCATCATGCACGACTGCGTGGTCAAGCTGCTGAAGAACCACGACGAGGAGTCTCTGGAGTGCCTGTGTCGGCTGCTCACCACCATCGGCAAGGACCTGGACTTCGAGAAGGCCAAGCCTCGCATGGATCAGTATTTCACCCAGATGGAGAAGATTGTGAAGGAGCGCAAGACCTCGTCCCGGATCCGCTTCATGTTACAGGACGTGATCGATCTCAGGCTGAACAACTGGGTGTCTCGGAGGGCAGACCAGGGCCCCAAGACCATCGAGCAGATCCACAAGGAGGCCAAGATCgaggagcaggaggagcagAGGAAGGTCCACCAGCAGCTGCTGTCCAAGGACAAGCGGAGACCAGTGGTGCAAAGAGAAGAGACCTGGAACACTGTGCCCATGACGAAGAACAGCCGCACCATCGATCCCAGCAAGATCCCCAAGATCTCCAAGCCAACCATAGATGACAAGATCCAGTTGGGGCCCAGAGCACAGCTGAGCTGGGGCAAGGGCAGCAGCGGAGGGGCAAAAGCCAGTGAGTCAGATTTGTCCCGCTCCAGTACGACCAGCTTGAACCGGTTCTCCGCCCTCCAGAATACGCAGCCCCAGGCCGCCACTCCCCCGGCACCCGCTTCGGACTTCGACGCGCGGAGAAATCTGAGCGGACGGAGCAGCACGGGGCGCGAGAGGAATGACAAGCCCGCGACGCCCTCCCCCAACCGGCCTGGCCCCTTCGCGCGGGGGAGCAGCAGCAAGGAGCTGTTGGAGGCCCAGGCCCAGGAGGAGCAGCAGAGGCGTGAGGTGCTTGAGGCGGTCAAGCTGCTGGCCCTGGCCAAGGAGAAGGCCGAGGCAGAGCGCAGCCGTGCGCGGGAGAGCGGGAAGCCCGAGGCGCCAGGATCAGTCACCGCAGAGAAGCCCACCTTAtcggaggaggagatggagaagaaATCTAAATCCATCATCGACGAGTTCCTGCACATCAATGATTATAAGGCGAGTTTCTGCGCAGAGTCTGACTCCTCTGaactctgtgtgcgtgtgcaggaGGCGGTGCAGTGCGTGGAGGAGCTCGACCAGCCCGCTCTGCTGCACGTGTTCGTCCGGGTGGGGGTGGAGTCCACGCTGGAGAGGAGTCAGATCACACGAGACCACATGGGGCAGCTGCTGTTCCAGCTGGTGCAGGCGGGAACCCTGTCCAAGTCCGAGTTCTTCAAAGGGTTCGCGGACACGCTGGAGTTTGCGGACGATATGGCCATCGACATTCCCCATATATGGCTGTACCTCTCGGAGCTGGTGAACCCCATGTTCCGGGAAGGAGGAATCTCTATGAGAGAATTATTTAcTGAATTTAGCAAACCTTTACTTCCTGTAGGAAGAGCTGGGAAATTATTTTCTGACATACTGCACCTACTATGCAAACAAATGAGCCATAGGAAAGTGGGGGCCTTGTGGAGGGATTCGGGCCTGAACTGGGCAGACTTCCTTCCAGAGGGAGAAGATGTATACAACTTTATCTCTGATGAGAAACTACAGTTCACTATATCGGACTGCTCGAGTCCCACGGAAGCCCTTTCGAAGAGAGAGCTTTCCCCCGAGGACCTCAACAAGCAATTCGAGAAACTCCTCCTGGAGGACATCGCTAGCGACGAACAAATCTTCGACTGGGTAGAGgcaAATTTAGATGAATCTCAGATGAGTTCCCCAGCATTCCTTAGAGCTTTAATGACCGCTGTGTGCAAGGCTGCAGTGAAAGGTGAGAGCACCGCGTGCCGCGTGGACACCGCCACCATCCAGAGGAGATTGCCGGTCCTACTCAAGTACCTTAACTCAGATACTGAGAGACAATTGCAAGCACTTTATGCACTTCAAGCATTGATAGTTAAACTTGATCAGCCTCCCAATTTGCTGCGGATGTTTTTCGACTGTTTGTACGATGAAGACGTGATCTCGGAAGACGCTTTCTACAAGTGGGAGACGAGCAAAGACCCTGCCGAGCAGCTGGGCAAGGGCGTGGCTTTGAAATCGGTCACGGCCTTCTTCACCTGGCTGCGAGAAGCAGAGGAGGAGTCGGAGGATAATTGACGAGAGGGGGAGGCCGTCTTCGCCAATTAGTGCAGAAACGCCAATTGTTGCAGAGAATGAACTAAAACGTAAAAccggaaaaacaaacaaatgcacagataGGAGGAGGTGGAAGACGGAACAACAACTGCGGTTGAAATATTATGGTACGGTTGTGAGAAGTACGGCGATTTTTGAGTTTGAATTCATGGGCGGGAGCACtaaacacatgtattatttatagaaaatatttttgttttaaattttaaaactttttctttttgttactttttaagAGACATTAAAACCAATTTCtgtgcaacaaaaacaaataataggtTCTGAactctttaatttattatttttttaaggactGCAAATACGGAAGTTTATTTAACGTTTGCAGATGCTCGAAACTCGGAGAAGAGCGACCACGAcggtaaaaaaataatagtgaaaCAGAAATAGCCCCCCTGGATTCCAAGTTTGGTTGAAAACAGGGTAATTAA

Function

GO: NA

KEGG:

id description
K03260 EIF4G; translation initiation factor 4G

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU151682 lncRNA downstream 33112 4567439 ~ 4569294 (-) True G121039
TU151590 lncRNA downstream 514988 4087108 ~ 4087418 (-) True G120975
TU151516 lncRNA downstream 898042 3700492 ~ 3704364 (-) True G120914
TU151434 lncRNA downstream 1061580 3538762 ~ 3540826 (-) True G120853
TU151429 lncRNA downstream 1065881 3535822 ~ 3536525 (-) True G120849
TU151778 lncRNA upstream 80100 4716592 ~ 4722181 (-) True G121111
TU151835 lncRNA upstream 474110 5110602 ~ 5116017 (-) True G121151
TU151836 lncRNA upstream 491546 5128038 ~ 5137006 (-) True G121152
TU151881 lncRNA upstream 591182 5227674 ~ 5228131 (-) True G121188
TU151991 lncRNA upstream 1221509 5858001 ~ 5861642 (-) True G121271
AMCG00002139 mRNA downstream 2292 4594152 ~ 4600114 (-) True AMCG00002139
AMCG00002136 mRNA downstream 23234 4570976 ~ 4579172 (-) True AMCG00002136
AMCG00002132 mRNA downstream 179130 4414282 ~ 4423276 (-) True AMCG00002132
AMCG00002131 mRNA downstream 349009 4220002 ~ 4253397 (-) True AMCG00002131
AMCG00002120 mRNA downstream 655851 3945137 ~ 3946555 (-) True AMCG00002120
AMCG00002137 mRNA upstream 14803 4651295 ~ 4673352 (-) True AMCG00002137
AMCG00002141 mRNA upstream 104997 4741489 ~ 4747439 (-) True AMCG00002141
AMCG00002142 mRNA upstream 112676 4749168 ~ 4752332 (-) True AMCG00002142
AMCG00002144 mRNA upstream 160897 4797389 ~ 4811362 (-) True AMCG00002144
AMCG00002154 mRNA upstream 564926 5201418 ~ 5214408 (-) True AMCG00002154
TU151612 other downstream 382529 4214715 ~ 4219877 (-) True G120993
TU151529 other downstream 815862 3784236 ~ 3786544 (-) True G120927
TU151499 other downstream 886154 3713867 ~ 3716252 (-) True G120907
TU151364 other downstream 1474462 3113442 ~ 3127944 (-) True AMCG00002094
TU151301 other downstream 1597489 2995508 ~ 3004917 (-) True G120748
TU152605 other upstream 3200003 7836495 ~ 7839411 (-) True AMCG00002223
TU153137 other upstream 5195419 9831911 ~ 9833224 (-) True AMCG00002276
TU153139 other upstream 5205603 9842095 ~ 9853075 (-) False AMCG00002279
TU153575 other upstream 6888401 11524893 ~ 11527355 (-) False AMCG00002317
TU153660 other upstream 7031263 11667755 ~ 11685089 (-) False AMCG00002327

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042994 False 5031 mRNA 0.52 35 NC_007134.7 21978816 ~ 22060520 (+)
grasscarp (Ctenopharyngodon idella) CI01000001_07231558_07266828.mRNA True 5297 mRNA 0.52 30 CI01000001 7231558 ~ 7266902 (+)