AMCG00002154 (dhrs3,LOC106582983)


Basic Information

Item Value
gene id AMCG00002154
gene name dhrs3,LOC106582983
gene type coding
species bowfin (Amia calva)
category of species ecological fish

Chromosome Information

Item Value
chromosome id CM030136.1
NCBI id CM030136.1
chromosome length 27394605
location 5201418 ~ 5214408 (-)
genome version AmiCal1_2021_bowfin_Genome

Sequence

>AMCG00002154
GGGGGTGGGGAAACGCAGAGAGGAAAACAGCCACTCACGGACAACACAGTAGTGCAATATTCCCAAACACTTAAACTGCCAATCAGGATTAATGGTCTATAAAAACTCCCCATCAGATCCAAGTCTCCCAGACACTGAGAGGATGGAAAAAGACTACCGAGGAGGAGCAGCCCAGTGATCATGTCTCCAGGATAGACAGCCTGCTCCCGGCAGCGCTCAGAGCCAGCGACTCCAATACGCGGCGCACGGAGAGAAGGCTCGCTTGTTATTTCCAAACTGCACACCGTGGTGACGGGGTGCTGAAACGGGGGCTGTTTCACTTTAAAGAGAAGAGGAGGGCAGAGCTGGTTTAGTCTGCATTGCCGCAGCAGTGTGGCGGACTTGCCTTCCTTTGACACAGGGCAAAGTTTATGTGCCACTGATCCTGCGCGCAACTTGCGAGGGCAGGCATGGATCTGTCGCTGCGGTTTATTCTGGTGCGCTTGTAACTCTGAACTGCGCTTGTAAAGCCACAGCTTTCTGGTGACATCCCCTGTGTGGCCATCACGCTGGTAAGAGAAGAAAGCCCGAGCGGAGGGCAGATCTACACGGGTGCCGGACTCGGCGGCTCTGGTGCGCTGCTTTGGTGCAACTCCACGTCTCATCCAGACCGGCTCAGTCAGCCCTTGCTCCCCCGCAGCCGCAGACGACATGGAGTGGAAGTGTCTGGGATCCGCGGTGCTTTTCCCCATCCAGATGATCTACTACATAGTCAAAGCTGGCGTGTGCATGTTGCTGCCGACCCGAATGAGAGACCTGAGCCGAGAGGTGGTGCTGATCACCGGCGGGGGAAGAGGCATCGGCCGCCACCTGGCCACGGAGTTTGCGAAGCAGGGGGCTAAGAAGGTGATCCTGTGGGGCCGCACTGAGAAGTGCCTGAAGGAGACCAGCGAGGAGATCAATCTCATGGGGACGGAGTGCCATTACTTCCTGTGCGATGTGGGGAACAGGGAGGAAGTGTACAAGCAAGCCAAGGTGGTGCGGGAGAGGGTGGGAGATGTCACCATACTCGTGAACAATGCTGCAGTGGTTCATGGGAAAAGTCTAATAGACAGCGATGACGATGCCCTCCTAAAATCACAGCACATCAACACACTGGGACAGTTCTGGACGACCAAGGCCTTTCTGCCGAGGATGCTGGAGCTGCAGAATGGCCACGTGGTTTGCATTAACTCCGTCTTATCGCTTTCTTCCATCCCTGGGGCCATCGACTACTGCACCTCCAAAGCCTCCTCGTTCGCCTTCATGGAGAGCCTCACGCTGGGGTTGCTGGACTGCCCAGGCGTGGCCACGACCACTGTACTGCCTTTCCACACCAACACGGAGATGTTCCAGGGCATGAGAGTCAGATTCCCCAATCTCTTCCCTCCCCTGAAGCCAGAGACAGTGGCCAGGCGGACCGTAGAGGCGGTACGGACCAACACAGCCTTTCTCTACCTGCCCTGGACGATGCATGCACTAGTCATACTCAAAAGCTTCATTCCACAGCAAGCACTTGAAGAAATCCACAGGTTCACGGGAACCTACACCTGCATGAACACCTTCAAAGGACGGACATGAGAGGCACATGGAGAAATTAAAGACTAACTGAGCAGCGAGAAAGCGTTAACATTAACACACGGAAAGCCACTCTTAAGGGACAAGAAAATGATGGGCAGCTTGGATTAACATTTACAGTGGGCAGAGAAGGCTGATGGACCTTTTGGAGACTCTTCCTGAGAATATTTATGAGCCCATAACCTTGCGTTTGATTGACTGACATGTTTTTAGTTGCTGCTACAGGCATATTTCTTCCATAGATACTCACCTTTTTGGTTCATACTCTggatgtgcattttatttctgtttcaattCAAGTATTAAGATTCTGGACCGGTGTCCCCACTGGAGCTCAaaatggaggaaagaaaaagagcaTCTGTGTATCTCTGAGAATCTCCCTGGTAGCAAGAGACAATACTTTAAAACTATCAGTGGATCTGATATAAAGACATGTTTTCCAGGGTTAGTTTTAGGTAgttctccattttttttctttttttcttttaaatctgtctttgatttgtttgcaGGGCTAACCTGCAACATATATGGTCTTTAACATCATTGTTTTGAATGAGTTCAGTTGAACACGTGATGTatgtctaaattaattaaaaaataaatgcataaataaaaat

Function

symbol description
dhrs3 Predicted to enable NAD-retinol dehydrogenase activity. Predicted to be involved in regulation of retinoic acid receptor signaling pathway and retinoid metabolic process. Predicted to act upstream of or within several processes, including animal organ morphogenesis; negative regulation of retinoic acid receptor signaling pathway; and regulation of ossification. Predicted to be located in endoplasmic reticulum membrane and photoreceptor outer segment membrane. Predicted to be active in lipid droplet.

NR:

description
Short-chain dehydrogenase/reductase 3

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016491 oxidoreductase activity molecular_function

KEGG:

id description
K11146 DHRS3; short-chain dehydrogenase/reductase 3

RNA

RNA id representative length rna type GC content exon number start site end site
AMCG00002154 True 2219 mRNA 0.51 6 5201418 5214408

Neighbor

gene id symbol gene type direction distance location
AMCG00002144 lactbl1,LOC106582988,LOC106565891 coding downstream 390056 4797389 ~ 4811362 (-)
AMCG00002142 NA coding downstream 449086 4749168 ~ 4752332 (-)
AMCG00002141 NA coding downstream 453979 4741489 ~ 4747439 (-)
AMCG00002137 NA coding downstream 528066 4651295 ~ 4673352 (-)
AMCG00002138 NA coding downstream 564926 4602406 ~ 4636492 (-)
AMCG00002153 NA coding upstream 37967 5252375 ~ 5254786 (-)
AMCG00002155 igsf21,LOC108438574 coding upstream 49599 5264007 ~ 5286782 (-)
AMCG00002158 NA coding upstream 546426 5760834 ~ 5786032 (-)
AMCG00002157 LOC106565901,LOC108438575,LOC104956748,LOC102783840,LOC107751159 coding upstream 590434 5804842 ~ 5827525 (-)
AMCG00002166 NA coding upstream 660374 5874782 ~ 5883711 (-)
G121152 NA non-coding downstream 64412 5128038 ~ 5137006 (-)
G121151 lrrc38,lrrc38b,LOC107691331,LOC107568719,LOC107555684,LOC108281009,LOC107685631 non-coding downstream 85401 5110602 ~ 5116017 (-)
G121111 NA non-coding downstream 479237 4716592 ~ 4722181 (-)
G121039 NA non-coding downstream 632124 4567439 ~ 4569294 (-)
G120975 NA non-coding downstream 1114000 4087108 ~ 4087418 (-)
G121188 NA non-coding upstream 13266 5227674 ~ 5228131 (-)
G121271 NA non-coding upstream 643593 5858001 ~ 5861642 (-)
G121274 NA non-coding upstream 657260 5871668 ~ 5874136 (-)
G121288 NA non-coding upstream 719250 5933658 ~ 5937833 (-)
G121384 NA non-coding upstream 996177 6210585 ~ 6213660 (-)
G120993 NA other downstream 981541 4214715 ~ 4219877 (-)
G120927 slc45a1,LOC107756616,LOC106565711,LOC107702000 other downstream 1414874 3784236 ~ 3786544 (-)
G120907 NA other downstream 1485166 3713867 ~ 3716252 (-)
AMCG00002097 NA other downstream 1734957 3407485 ~ 3466461 (-)
AMCG00002091 LOC103354943,LOC102299287,LOC101482394,LOC108441428 other downstream 2015065 3173505 ~ 3186353 (-)
AMCG00002167 NA other upstream 761317 5975725 ~ 6015393 (-)
AMCG00002223 NA other upstream 2612233 7826641 ~ 7839411 (-)
AMCG00002265 NA other upstream 4394342 9608750 ~ 9620127 (-)
AMCG00002275 ube4b,LOC107681967,LOC107570768 other upstream 4543017 9757425 ~ 9801108 (-)
AMCG00002276 NA other upstream 4616111 9830519 ~ 9833224 (-)

Expression


Co-expression Network