RNA id: TU18253


Basic Information

Item Value
RNA id TU18253
length 214
lncRNA type inter_gene
GC content 0.35
exon number 1
gene id G16317
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6800168 ~ 6800381 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

CGCCCCATGACGCTTTGCGCGAATTAAGGGTGTAACTTCCGTTAAGCTGTAAACAGTCAGTGAAAGGCTCGCTCTATGAACGCAATAATAAGTTTTTTTTTAATTTTTTTTTTAAACTGGGTACAATGAGATGACATTACTCTACTCACCCTTCAACCAACGAACATTAAAAGGACATTTAAAAGTGTAAAAACATCAACAAGGTACTTTCAAC

Function

GO: NA

KEGG: NA

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18214 lncRNA upstream 67243 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18220 lncRNA upstream 126657 6672182 ~ 6673511 (+) True G16284
TU18175 lncRNA upstream 284770 6515121 ~ 6515398 (+) True G16257
TU18164 lncRNA upstream 366840 6433084 ~ 6433328 (+) True G16247
TU18127 lncRNA upstream 517616 6282339 ~ 6282552 (+) True G16212
TU18962 lncRNA downstream 115406 6917686 ~ 6918262 (+) True G16922
TU18977 lncRNA downstream 135761 6936142 ~ 6946151 (+) True G16937
TU19054 lncRNA downstream 291372 7091753 ~ 7123993 (+) True G16977
TU19101 lncRNA downstream 351713 7152094 ~ 7152425 (+) True G17019
TU19046 lncRNA downstream 478862 7279243 ~ 7284904 (+) True G16970
CI01000001_06718133_06747744.mRNA mRNA upstream 52424 6717159 ~ 6747744 (+) False CI01000001_06718133_06747744
CI01000001_06700913_06706131.mRNA mRNA upstream 93745 6700811 ~ 6706423 (+) True CI01000001_06700913_06706131
CI01000001_06583486_06641365.mRNA mRNA upstream 158803 6583486 ~ 6641365 (+) True CI01000001_06583486_06641365
CI01000001_06564886_06568295.mRNA mRNA upstream 231873 6564886 ~ 6568295 (+) True CI01000001_06564886_06568295
CI01000001_06541966_06547403.mRNA mRNA upstream 252423 6541966 ~ 6547745 (+) True CI01000001_06541966_06547403
CI01000001_06825263_06835397.mRNA mRNA downstream 24882 6825263 ~ 6836463 (+) True CI01000001_06825263_06835397
CI01000001_06884020_06889266.mRNA mRNA downstream 83639 6884020 ~ 6889992 (+) True CI01000001_06884020_06889266
CI01000001_06893068_06917387.mRNA mRNA downstream 92687 6893068 ~ 6917408 (+) False CI01000001_06893068_06917387
CI01000001_06921000_06929478.mRNA mRNA downstream 120619 6921000 ~ 6930359 (+) True CI01000001_06921000_06929478
CI01000001_06939316_06939879.mRNA mRNA downstream 138852 6939233 ~ 6940705 (+) True CI01000001_06939316_06939879
TU17891 other upstream 1085217 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1510212 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1735464 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1736239 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 3178717 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 732191 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 732259 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 732383 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1231743 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2415641 9216022 ~ 9228859 (+) True G17353

Expression Profile