RNA id: TU18164


Basic Information

Item Value
RNA id TU18164
length 245
lncRNA type inter_gene
GC content 0.41
exon number 1
gene id G16247
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6433084 ~ 6433328 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

AGAAGATTCATAAAGCTTCATGAAGCAGTGTTTTGAAATCGCTCATCACTAGATATTGTTGAATAAACTGCCAAAGTCACGTGATTTCAGTAAACGAGGCTTCGTTATGTCATAAATGTTTCGAAATTTCAGTGGTTCATGTGACTTTGGCAGTTTGATACGCGCTCCGAACCACTGATTTGAAACAAAAGATTCGTAAAGCTTCGAAGCTTCATGAAGCATCGTTTTGAAATCGCCCATCACTA

Function

GO:

id name namespace
GO:0016071 mRNA metabolic process biological_process
GO:0000375 RNA splicing, via transesterification reactions biological_process
GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile biological_process
GO:0006397 mRNA processing biological_process
GO:0000398 mRNA splicing, via spliceosome biological_process
GO:0016607 nuclear speck cellular_component
GO:0005681 spliceosomal complex cellular_component
GO:0005685 U1 snRNP cellular_component

KEGG:

id description
ko03040 Spliceosome

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18127 lncRNA upstream 150532 6282339 ~ 6282552 (+) True G16212
TU18107 lncRNA upstream 205939 6226859 ~ 6227145 (+) True G16193
TU18103 lncRNA upstream 224304 6208552 ~ 6208780 (+) True G16189
TU18102 lncRNA upstream 224730 6207632 ~ 6208354 (+) True G16188
TU18086 lncRNA upstream 255952 6176623 ~ 6177132 (+) True G16172
TU18175 lncRNA downstream 81793 6515121 ~ 6515398 (+) True G16257
TU18220 lncRNA downstream 238854 6672182 ~ 6673511 (+) True G16284
TU18214 lncRNA downstream 290481 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18253 lncRNA downstream 366840 6800168 ~ 6800381 (+) True G16317
TU18962 lncRNA downstream 482459 6917686 ~ 6918262 (+) True G16922
CI01000001_06420606_06430104.mRNA mRNA upstream 2951 6420606 ~ 6430133 (+) True CI01000001_06420606_06430104
CI01000001_06363645_06370085.mRNA mRNA upstream 62983 6363645 ~ 6370101 (+) True CI01000001_06363645_06370085
CI01000001_06325915_06358454.mRNA mRNA upstream 74410 6325074 ~ 6358674 (+) True CI01000001_06325915_06358454
CI01000001_06309664_06321614.mRNA mRNA upstream 110996 6309361 ~ 6322088 (+) True CI01000001_06309664_06321614
CI01000001_06303405_06305351.mRNA mRNA upstream 127733 6303405 ~ 6305351 (+) True CI01000001_06303405_06305351
CI01000001_06442969_06455699.mRNA mRNA downstream 9641 6442969 ~ 6455859 (+) True CI01000001_06442969_06455699
CI01000001_06458769_06470107.mRNA mRNA downstream 25441 6458769 ~ 6470495 (+) True CI01000001_06458769_06470107
CI01000001_06474891_06479887.mRNA mRNA downstream 41563 6474891 ~ 6480025 (+) True CI01000001_06474891_06479887
CI01000001_06484769_06502296.mRNA mRNA downstream 51441 6484769 ~ 6504149 (+) True CI01000001_06484769_06502296
CI01000001_06519105_06525958.mRNA mRNA downstream 85305 6518633 ~ 6526120 (+) True CI01000001_06519105_06525958
TU17891 other upstream 718133 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1143128 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1368380 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1369155 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2811633 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1099244 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1099312 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1099436 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1598796 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2782694 9216022 ~ 9228859 (+) True G17353

Expression Profile