RNA id: CI01000001_06442969_06455699.mRNA


Basic Information

Item Value
RNA id CI01000001_06442969_06455699.mRNA
length 3337
RNA type mRNA
GC content 0.50
exon number 25
gene id CI01000001_06442969_06455699
representative True

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6442969 ~ 6455859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome
species grasscarp
(Ctenopharyngodon idella)

Sequence

ATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCACTGCTCCTCCTCTAACTCTGTCAGAACCGAACTGTCCCACACACCAGCTAACGGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGTCTGTACTCCAGACAGCTGTACGTACTGGGCCATGATGCTATGAAGCGCATGCAGAGCTCCAATGTTCTGATCTCAGGGATGCGAGGTTTGGGTGTAGAAATAGCCAAGAATGTAATTCTGGGCGGAGTCAAGAGCGTCACCCTGCATGACCAGGGCGTGGCCGAGTGGAGGGACCTTTCATCACAGTTTTACCTCCGTGAAGAGGATCTTGGGAAGAACCGTGCAGATGTCAGTCAGACTCGACTGGCAGAACTGAACAGCTATGTGCCTGTAACCTCCTACACTGGCACCCTCACCAACGAATACCTGACCCAGTTTCAGGTTGTTGTGCTCACCAACTCTAGCCTCGATGAGCAGACACGCATCGGGGAATTCTGCCACAGTGATGGCATCAAGTTGATCGTAGCAGACACACGTGGGCTGTTTGGGCAACTATTCTGTGATTTTGGGGAGGAAATGTTAGTGTTTGACACCAATGGTGAGCAGCCGTTGAGCGCCATGATCTCAATGATCACAAAGGACAGCGCTGGTGTGGTTACGTGTCTGGATGAAGCACGACATGGATTTGAGAGTGGAGACTACGTCACTTTCACAGAAGTGCAGGGCATGACAGAGCTCAATGGTTGTGAACCAGTAGAGATCAAGACACTGGGTCCTTACACCTTCAGCATCTGTGACACAAGCTCATTCTCGGACTATGTGAGAGGTGGTATTGTCACGCAAGTGAAGATGCCTAAGAAAATTGCCTTTAAATCCCTGCCCTCCTCCATGGCCGAACCAGAGTTCATGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTGCACGTGGGCTTTCAGGCGCTACATGCATTTGAGAAGAAGCACAGTCGTCTACCGAAGCCCTGGAGTCAGTCGGATGCGGACGAGTTTGTGACTCTGGCTGAAGAGGTGAACGCTGCACAGACCGGATCTGCCAAGCAGGAGCAGCTGGACCAGGCAATCATCAAAAAACTGTCCTGCATGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAGGCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTGTGGAGTGCTTACCTGAGGCTGAGGATGTCGTTCTTACAGAGGAAGAGTGTGCACCTAGGAATTGCCGGTATGATGGCCAGATTGCTGTCTTTGGATCCAAGCTGCAAGAGCTGTTAGCCAAACAGCGATATTTTCTGGTTGGTGCTGGAGCCATCGGCTGTGAGCTGCTGAAAAACTTTGCCATGATGGGCTTGGCGAGCGGTGATGGGGAGGTCATAGTCACTGACATGGACACCATAGAGAAGTCCAATCTCAATCGACAGTTCCTCTTCAGGCCCTGGGATGTCACGAAGATGAAGAGCGAGACCGCCGCTGCAGCCGTGAAGCAGATGAACCCGACAGTCCGAATCACAGGCCATCAGAACCGTGTAGGGCCGGACACAGAGAAGGTTTATGATGATGACTTCTTTGAAAGCCTTGATGGAGTGGCAAATGCTCTTGACAATGTAGATGCCCGTATGTATATGGACCGGAGATGTGTGTACTACCGTAAGCCATTGCTGGAGTCTGGTACTCTAGGCACCAAAGGGAATGTGCAGGTGGTCATTCCCTTCCTGACAGAGTCATACAGCTCCAGCCAGGATCCTCCAGAAAAGTCCATTCCTATCTGCACACTCAAAAACTTCCCTAATGCAATCGAACACACCCTCCAGTGGGCTCGTGATGAGTTTGAGGGACTTTTCAAGCAGCCTGCTGAAAATGCCTTGCAGTATCTGACAGACCCAAAGTTTATGGAGCGCACGCTGAAGCTCCCTGGAGCTCAGCCGTTGGAGGTGCTGGAGGCAGTATACAAGAGCCTGGTGACAGACAAACCACGCAACTGGGAGGACTGTGTAGCTTGGGCTCGCAACCACTGGCAGTGTCAATATAACAACAACATCCGTCAGCTACTGCACAATTTCCCCCCAGACCAGCTTACCAGCTCTGGGGCGCCATTCTGGTCCGGCCCAAAAAGATGTCCTCATCCATTAGAATTCAGCACTAACAATGATCTTCACATGGACTACATTATGGCAGCAGCTAACTTATATGCCCAGTCATATGGCCTGCCGACCTCAACTGACCGCCCGGCTCTGACCAAGCTGCTGCAAGAAATTAAAGTGCCTGAGTTCACACCCAAGTCAGGAGTCAAGATCCACGTGTCTGATCAGGAGCTGCAGAGTGCCAATGCATCAGTCGATGACTCTAGGCTTGAAGAACTGAAGACACTGTTGCCTTCTGTAGAAGCGACTTCTCAGTTCAAGCTCTGTCCCATTGACTTTGAAAAGGACGATGACACAAACTTCCATATGGACTTCATTGTAGCGGCTTCTAATCTGAGAGCAGAGAACTATGACATTCCTCCTGCAGATAGACATAAGAGCAAGCTCATTGCTGGAAAAATCATTCCAGCCATCGCCACGACGACAGCTGCTGTGGTGGGTCTTGTGTGTCTGGAGCTGCTGAAGATTGTTCAGAAACACAAGAAGCTCGAGTCCTACAAGAACGGCTTCATGAACCTTGCTCTACCTTTCTTTGCCTTCTCTGAGCCCATAGCTGCCCCCAAGCACAAGTACTACGAAATTGATTGGACGCTTTGGGACCGTTTCGAGGTGAAGGGCATTCAGCCCAATGGAGAGGAAATGACACTCCGACAGTTCTTGGACTATTTCAAGAATGAACACAAACTGGAGATCACTATGCTCTCTCAGGGAGTTTCCATGCTCTACTCTTTCTTCATGCCTGCGGCCAAGCTTAAAGAAAGGCTGGAACTGCCGATGACTGAGATTGTGACCAAGGTGTCCAAGAAGAAACTGGGGAAGCATGTTAAAGCACTAGTTTTTGAGCTCTGCTGCAATGATGACACAGAAGAGGATGTCGAGGTCCCCTACGTCAGATACACCATCCGCTGAGAGGGCTGTTGGGGTAGGGAAGGGGACATGTCGGAGGAGGGAGAGGGCGGCCCACTGGGAATGGGGAGTATCAGTATGCTTGGAGAGCCCAAAGAGAAATCAATCTTTTTTTATTTTAATTTTTTTTATTTTTTTATTTAGTTACTGAATAATATAAGAA

Function

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K03178 UBE1, UBA1; ubiquitin-activating enzyme E1

JBrowse2

Neighbor

RNA id RNA type direction distance location representative gene id
TU18164 lncRNA upstream 9641 6433084 ~ 6433328 (+) True G16247
TU18127 lncRNA upstream 160417 6282339 ~ 6282552 (+) True G16212
TU18107 lncRNA upstream 215824 6226859 ~ 6227145 (+) True G16193
TU18103 lncRNA upstream 234189 6208552 ~ 6208780 (+) True G16189
TU18102 lncRNA upstream 234615 6207632 ~ 6208354 (+) True G16188
TU18175 lncRNA downstream 59262 6515121 ~ 6515398 (+) True G16257
TU18220 lncRNA downstream 216323 6672182 ~ 6673511 (+) True G16284
TU18214 lncRNA downstream 267950 6723809 ~ 6732925 (+) True CI01000001_06718133_06747744
TU18253 lncRNA downstream 344309 6800168 ~ 6800381 (+) True G16317
TU18962 lncRNA downstream 459928 6917686 ~ 6918262 (+) True G16922
CI01000001_06420606_06430104.mRNA mRNA upstream 12836 6420606 ~ 6430133 (+) True CI01000001_06420606_06430104
CI01000001_06363645_06370085.mRNA mRNA upstream 72868 6363645 ~ 6370101 (+) True CI01000001_06363645_06370085
CI01000001_06325915_06358454.mRNA mRNA upstream 84295 6325074 ~ 6358674 (+) True CI01000001_06325915_06358454
CI01000001_06309664_06321614.mRNA mRNA upstream 120881 6309361 ~ 6322088 (+) True CI01000001_06309664_06321614
CI01000001_06303405_06305351.mRNA mRNA upstream 137618 6303405 ~ 6305351 (+) True CI01000001_06303405_06305351
CI01000001_06458769_06470107.mRNA mRNA downstream 2910 6458769 ~ 6470495 (+) True CI01000001_06458769_06470107
CI01000001_06474891_06479887.mRNA mRNA downstream 19032 6474891 ~ 6480025 (+) True CI01000001_06474891_06479887
CI01000001_06484769_06502296.mRNA mRNA downstream 28910 6484769 ~ 6504149 (+) True CI01000001_06484769_06502296
CI01000001_06519105_06525958.mRNA mRNA downstream 62774 6518633 ~ 6526120 (+) True CI01000001_06519105_06525958
CI01000001_06531852_06539325.mRNA mRNA downstream 75993 6531852 ~ 6539493 (+) True CI01000001_06531852_06539325
TU17891 other upstream 728018 5711885 ~ 5714951 (+) True G15995
TU17699 other upstream 1153013 5289881 ~ 5289956 (+) True G15838
TU17650 other upstream 1378265 5061218 ~ 5064704 (+) False G15794
TU17651 other upstream 1379040 5061218 ~ 5063929 (+) True G15794
TU16602 other upstream 2821518 3616248 ~ 3616411 (+) True G14846
TU19033 other downstream 1076713 7532572 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19037 other downstream 1076781 7532640 ~ 7540586 (+) False CI01000001_07531945_07539781
TU19034 other downstream 1076905 7532764 ~ 7540460 (+) True CI01000001_07531945_07539781
TU19348 other downstream 1576265 8032124 ~ 8032483 (+) True G17234
TU19478 other downstream 2760163 9216022 ~ 9228859 (+) True G17353

Expression Profile


Homologous

species RNA id representative length rna type GC content exon number chromosome id location
zebrafish (Danio rerio) TCONS_00042943 False 4223 mRNA 0.48 26 NC_007134.7 20640484 ~ 20664621 (+)
bowfin (Amia calva) AMCG00009659 True 3343 mRNA 0.60 25 CM030126.1 43859081 ~ 43873704 (+)