CI01000001_06363645_06370085 (ADNP)


Basic Information

Item Value
gene id CI01000001_06363645_06370085
gene name ADNP
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6363645 ~ 6370101 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06363645_06370085.mRNA
GAGGCGCCATTCCAGGGCTGTAATGCAGAAGCCTGCATAAAGAAAGGGAGTGGAAAAAGGGCAGGCAGAACAGGGAGAGGCTTATATAACATGGAGGAAGAGCTGTTCTCTAGCGCCATCTACAAAGGATGGGAGAAAGACTTTAAGGACTTTGTTCCCAATGAGTTCTACATTAAAAACACCGCATGGGACGATGTGTGTATGTGGGATCCCTCAATGACCAAATCACAAGAGTATCGCTCAAAGCCGTTCTGTTGTTCAGGATGTACATTCTCCTCCAAGTTTTTCTCTGCCTACAAGAGTCACTTTCGTAATGTGCACAGTGAGGACTTTGAAAACCGCATTCTCCTGAACTGCCCCTATTGCACTTACAATGGGAACAAAAAGACTTTGGAGACACACATCAGACTGTTTCATATGCCCAACAATATGGTGCGCCAGAATGTTGGAGGACCTCAGGGAGCAGGGGTTGGTTTGAAAGATGGTGCTCGACTGGACAAGACACGTGATAATATAGAGCAAGCAGTGTACTACTGCAAGAAATGCACTTACAGGGACCCACTATATAATGTGGTGCGAAAGCATATCTACCGAGAACATTTTCAACACGTAGCGGCACCGTACTTGGTGAGGCCTGGTGAGAAGATAACACCACCCAATGGGACAACAGCAGGCTCTGGTGCAGGAAGCAATGCTGATTCTGGTGGTGCTAACAGTACGAGCACAGCCATCCACTGCAAACGGTGCCTATTTGTACCCCGTACCTATGAAGCCCTTGTGCAGCATGTCATTGAGGACCATGAGCGCATTGGTTATCAAGTTACTGCCATGATTGGACACACCAATGTAGTGGTACCTCGGGCGAAGCCTGTGATTATGGTGTCCCCTAAAGCTCAGGGTGATAAGGGCCTCATTGGTGTAATGCCAAAGGGTACAGTAGTGACTGGGGTACGGCCTTTATCCACTCAGCAGCTGAGCCGAATTGTCATTCCTAAAGGGAGTTTGAACTCAAGTGGTCTCCTGTCAGGTGTTCACCTGAAACAGGGAGCATTTGGTCTGAAGCCAGGGACTACACAATCCTTGACCATCGGAGGACAACAGGTTCAGCTGTCAATCCCACAGCAGTCTCAAACAAGCAAACCACAGCTTTCTGCTAGTCTCCGCAGTTCGGTTTCTGCATCTGCATCCACTTCCATACTAAAGATCCCTCAGCTGAACTCTCGAGTTCAGGCAGCAGCTACTACAGTGTCATCTGTTACCTCCAAGAAGGGCAACTCTGTCATCGGCACATCTTACACTCAAAAATGGAAGATCTGCACCATCTGCAATGAGCTGTTTCCAGAAAATGTGTATAGTTCGCATTTTGAAAAGGAGCACAAAGCGGAAAAGGTACCGGCGGTGGCCAACTACATCATGAAAATTCACAACTTCACCAGTAAATGCTTATACTGCAACCGTTACCTACCTAGCGACACACTTCTTAACCACATGTTGATACATGGCTTATCTTGCCCGCACTGCAGGGCCACATTCAATGATGTGGAAAAAATGGTGACGCACATGCGAGGGGTACATCCCAATGAATCCGTTGGGCCACGGACAGACTCCCCACTTACTTTTGACCTCACACTTCAGCAGGGAAATCCCAAGAATGTCCAGCTGATCGTCACCACATATAACATGCGGGATGCCCCAGAAGAATCTGTGGCATTCCATGCCCAAAACAACGCATTACCACCATCATTGCAGGGGAATAAACAGGTTACCCCACAAGTCCCAAAGATACCCTCAGATGCCTCAGACGTCATACCGGCTAAGGCTACACCACAAGCAGCTGTACCTTATAAGAAGGATGTAGGCAAAACACTTTGTCCTCTCTGCTTCTCAATTCTTAAGGGACCTATCTCAGATTCTCTAGCTCATCACTTGCGTGACCGCCATCAAGTTATACAAACGGTTCATCCTGTGGAGAAGAAGTTGACTTACAAGTGCATCCATTGCCTTGGCGTCTACACTAGTAACATGACAGCTTCCACTATCACTTTGCATCTTGTGCACTGCCGGGGTGTCAGCAAAACTCAAAACGGCCGGCCTGCTCCCTCTGCGAGAGTTGCGCAGGCACAGGGTGCTGGTCTCAAACGGGCAGGTTTAGCAAATTTCGACCAAACTGAGCCAAAGAGAAGAAAATCCGGAACCGATGACCAGACTGGGCATAGCCCACCAGTTTCAACTGACAAACAAGACGACCCTGTAGTCTTTGCCCTGGACCCGAAGGGTTACGAGAATGAGTCCTACGAGACACGAAAAGCTTTCCTCACTCAGTACTTCAACAGGCAGCCTTACCCCACTCGCCGAGAGGTGGAGAAGCTTGCGTCCAGTCTCTGGCTTTGGAAATCTGACATTGCGAGCCACTTCTCAAATCGAAGGAGGAGATGTATGCTGAATTGTGAAACGTTAAACACTCGGGTCCTGCTGGGATTCAAAATGCAAGACATTGTAGATTTGCATCATCCCATTAAGTTTGACTCAAAGTGCTATTTCGAGAACCATAAAAATGACCATAAAAATGACCATAAAAGACGAACTTCTAAGTATCGCATAGGCAGATCTGCAAATGCCATTCGCTTTCGGCAAAGAGCTACAACCAATGGTGACCTGCAGCAGAAGCATGGGACGCTAACAAGGGGTTCCGCCAAAGCCTTGCTTTACTCGAATGGTCAAAAGACCATCCTAGGGAGCAACTGCAATGATTCAACGAAGAGCACCTTAAAACCTGAAGCACTTGTCAATTCTGAACCAATTGCTGTGGACTCGGACAGCGATAATGAGGTGAATGTGCAAAATGCTAGTCTAAATGCACAGTCCCTTAGTAGTGAGGAACCAGAGACAAATGATAAAGTGGAAGGAAGTGACTCTGACATCAGGGAGGACACCCACAGCGAAAACGGCTATGGGGAGAAAGACTTGTTAAATGAAACAAGGCAACGAAAGGGCGAATGTCAGTCAGGTATCACAAACAAGCTTGAACAATCAGAGACTCAGTTAACCAAGCAACAGGTCTGATTTCTGGACAGGGTGA

Function

symbol description
adnp Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific. Predicted to be involved in regulation of gene expression. Predicted to act upstream of or within negative regulation of neuron apoptotic process. Part of RNA polymerase II transcription regulator complex. Implicated in Helsmoortel-Van Der Aa Syndrome.

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06363645_06370085.mRNA True 3079 mRNA 0.48 3 6363645 6370101

Neighbor

gene id symbol gene type direction distance location
CI01000001_06325915_06358454 SLC35C2, COL20A1 coding upstream 4971 6325074 ~ 6358674 (+)
CI01000001_06309664_06321614 SLC35C2 coding upstream 41557 6309361 ~ 6322088 (+)
CI01000001_06303405_06305351 TNNC2 coding upstream 58294 6303405 ~ 6305351 (+)
CI01000001_06297032_06300530 TNNC2, TNNC2.L coding upstream 62985 6297032 ~ 6300660 (+)
CI01000001_06121398_06124748 TNNC1.L, TNNC1B, TNNC1, TNNC1A coding upstream 238693 6121398 ~ 6124952 (+)
CI01000001_06420606_06430104 CAMKVL coding downstream 50505 6420606 ~ 6430133 (+)
CI01000001_06442969_06455699 UBA1 coding downstream 72868 6442969 ~ 6455859 (+)
CI01000001_06458769_06470107 ARHGEF3L coding downstream 88668 6458769 ~ 6470495 (+)
CI01000001_06474891_06479887 USP21 coding downstream 104790 6474891 ~ 6480025 (+)
CI01000001_06484769_06502296 CCDC30 coding downstream 114668 6484769 ~ 6504149 (+)
G16212 NA non-coding upstream 81093 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 136500 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 154865 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 155291 6207632 ~ 6208354 (+)
G16172 NA non-coding upstream 186513 6176623 ~ 6177132 (+)
G16247 NA non-coding downstream 62983 6433084 ~ 6433328 (+)
G16257 NA non-coding downstream 145020 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 302081 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 353708 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 430067 6800168 ~ 6800381 (+)
G15995 NA other upstream 648694 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1073689 5279837 ~ 5287698 (+)
G15794 NA other upstream 1298941 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2742194 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4692641 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1162471 7531541 ~ 7540586 (+)
G17234 NA other downstream 1662023 8032124 ~ 8032483 (+)
G17353 NA other downstream 2845921 9216022 ~ 9228859 (+)
G17354 NA other downstream 2864362 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3048227 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021634 adnpb coding NC_007134.7 CM002907.2 20518504 ~ 20530056 (+)