CI01000001_06297032_06300530 (TNNC2, TNNC2.L)


Basic Information

Item Value
gene id CI01000001_06297032_06300530
gene name TNNC2, TNNC2.L
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6297032 ~ 6300660 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06297032_06300530.mRNA
CCCACTGATGCACAGGCAGACGCCCGCTCTTTCCTGAGTGAGGAAATGATTGCTGAGTTCAAGGCTGCCTTCGACATGTTCGACACCGATGGTGGCGGTGATATCAGCACCAAGGAGTTGGGTACCGTCATGAGGATGTTGGGTCAGAACCCAACCAGAGAGGAGCTGGATGCTATCATTGAAGAAGTAGATGAAGATGGCAGTGGCACTATTGACTTTGAGGAGTTCTTGGTCATGATGGTGCAGCAACTAAAAGAAGACCAAGCTGGCAAGTCCGAAGAGGAGCTATCTGAATGCTTCCGTGTCTTTGACAAAAACCAAGATGGTTGGATCGATCGTGAGGAGTTTGGGGAAATTTTGCGTGCCACTGGCGAGCCGTTGGCAGAGGAAGACATAGATGAACTCATGGCAGATGCAGACACAAACAAAGATGGAAAGATTGATTTTGATGAGTTTCTTAAAATGATGGAGAACGTCCAGTAAGAAAAAAATTACATTCCATCCCCTCCAATCATTAATGAAAGCAAGTCAAGATGTTGAAGAAAAACTCACGCTGAGATCTTTAAAGGAAAAGAGTACAGAGGACACAACACCCTGGTTTAAATCACCAGAA

Function

symbol description
tnnc2 Predicted to enable actin filament binding activity; calcium ion binding activity; and calcium-dependent protein binding activity. Acts upstream of or within response to activity. Predicted to be part of troponin complex. Is expressed in fast muscle cell; head muscle; heart tube; skeletal muscle; and skeletal muscle cell. Orthologous to human TNNC2 (troponin C2, fast skeletal type).

NR:

description
troponin C

GO:

id name namespace
GO:0005861 troponin complex cellular_component

KEGG:

id description
K12042 TNNC2; troponin C, skeletal muscle

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06297032_06300530.mRNA True 613 mRNA 0.46 5 6297032 6300660

Neighbor

gene id symbol gene type direction distance location
CI01000001_06121398_06124748 TNNC1.L, TNNC1B, TNNC1, TNNC1A coding upstream 172080 6121398 ~ 6124952 (+)
CI01000001_06040916_06041645 NA coding upstream 254422 6040916 ~ 6042610 (+)
CI01000001_05960289_05963221 NA coding upstream 333689 5958349 ~ 5963343 (+)
CI01000001_05942155_05943721 NA coding upstream 353013 5942155 ~ 5944019 (+)
CI01000001_05933655_05938581 FLNA coding upstream 357791 5933655 ~ 5939241 (+)
CI01000001_06303405_06305351 TNNC2 coding downstream 2745 6303405 ~ 6305351 (+)
CI01000001_06309664_06321614 SLC35C2 coding downstream 8701 6309361 ~ 6322088 (+)
CI01000001_06325915_06358454 SLC35C2, COL20A1 coding downstream 24414 6325074 ~ 6358674 (+)
CI01000001_06363645_06370085 ADNP coding downstream 62985 6363645 ~ 6370101 (+)
CI01000001_06420606_06430104 CAMKVL coding downstream 119946 6420606 ~ 6430133 (+)
G16212 NA non-coding upstream 14480 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 69887 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 88252 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 88678 6207632 ~ 6208354 (+)
G16172 NA non-coding upstream 119900 6176623 ~ 6177132 (+)
G16247 NA non-coding downstream 132424 6433084 ~ 6433328 (+)
G16257 NA non-coding downstream 214461 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 371522 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 423149 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 499508 6800168 ~ 6800381 (+)
G15995 NA other upstream 582081 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1007076 5279837 ~ 5287698 (+)
G15794 NA other upstream 1232328 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2675581 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4626028 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1231912 7531541 ~ 7540586 (+)
G17234 NA other downstream 1731464 8032124 ~ 8032483 (+)
G17353 NA other downstream 2915362 9216022 ~ 9228859 (+)
G17354 NA other downstream 2933803 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3117668 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021629 TNNC2 coding NC_007134.7 CM002907.2 20408227 ~ 20420243 (+)
bowfin (Amia calva) G27974 NA unknown CM030123.1 CM030123.1 40056632 ~ 40059386 (+)