CI01000001_06325915_06358454 (SLC35C2, COL20A1)


Basic Information

Item Value
gene id CI01000001_06325915_06358454
gene name SLC35C2, COL20A1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6325074 ~ 6358674 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06325915_06358454.mRNA
CTATATAAGTCATGTAATGTTTGACTTAATGAGTAAAGACAGTAAAGTCTTACCACCTAGTAATGCGCAGTTCATGCGCATTGCTTTAGTTCTAGGTTTCATAATGCTCTTGTGTAGCGGTAATAGCTTTCGACAGCTCACTTTAGGTGTGGTATCACAACAGATTCAACGAGCTTTAAAGGTCCCAATATCATCGGTTTCTGTTGTATTCAGCACAACAAGCCAATGCATGTAAATGCCGTCTTATTATGGCCCAAAGCAAGGGCAGGGAGGGGGTCCAATTAAAATAGGTGCCAAATTATTGCACTTCTCACACATAATATTTGTGTGAATCAGACCAGCACTACTGAGAAGATTTGCTGTTCTCTCCATTGATTTTTTTTTTTTTTTTTTTTTTTTTTTTTTGATGCAGACAGGTGGGATTTTAATGAGTCAGTTCACTTGCTGGATACAAGCTAAACTCAGGTTTGCAGACATGTCTGGTTATAAATATATAACAGGTGTTCAGTTTTCCCTCCCTCGTCTTGTAATTGTCTTCAATGAGCCTGTAATGACCACTTCTGGTGCAGCCTTTTCTGCAAGTGTCCCATCTCTTTTTGTCCTTATCACTTCCTCTTATTTAAAGCTGTTACATTAAAGGGTTTGGGATACTCTCTGTATGCGGCCGGCTTCAGCGGAGAACAGCAGCTTTACGGTGCCAATGTTCATAACTACTGTTTATGTTATTATGATAATCTCGCTTTGATGTATATTTGGAGTGAATGAAAGTTACACTCATTTTTCGCCTTGCTCACAGTGACTGTTTTCCCACAGGTCTTTAATTGATACCATCTCAATCATGATGGCCCACATCTTTCCTCTCGTCCTCCCAGAGCGAACGACACTCATCCTGGTGACGGTTCTCCTTATGCTGGTTTTTGAAGTTCATTCCCAAGGCCGGCTGAAGCTGACTGTTTTGTCTGAAGATCGGTTGCAGATGAAATGGAAGGAGGCGGAAGGACCAGTGCAGGGTTACAAGGTCCGTGTGCGGCCCATCACAGAGGTTCAACAGCCAGAGCTGATGCTGACGACCACACGCGGCCGGGCCACGGTGGCAGGTCTGGACTCCAGACAGGAATACCTCCTCCAAGTCCTGGTGCTCAATGGGACGCAGGAGAAACTCATTGCAAAAAGACGTTTTACCATCGATGGGTTGCGTGAAGAAGAGTCGATCCGCAGCGGGAACAGGGAGCAGAAGAAGAAAACTCCCTCCATTGGCTTGGGATCTGGAGAGGTGGATGACGTGACGGAGGCTCTCGCAGCCCTTCCCACTGTTCTCTACCGAGAACCGACAACTACAGGTGTTTCCACACGAAAGCCGTTTGAATGCAGTGCTGGAGTTCAGGCAGATCTGGTCCTTCTTGTGGATGGATCCTGGAGCATTGGCCGCACAAACTTCAGAAAAGTGCGCGACTTCCTGGAGGGCCTGGCTGTCCCCTTTCACATCGGCCCGCAGGGCATGCAGATAGCATTATCTCAGTACAGTGGAGATCCTCGCACAGAGTGGCATCTTAATAACTTCACCTCTAGAGAGCCGCTTTTGGAGGCCATCAGGAACTTCAGATACAAGGGAGGCAACACTTTCACTGGTCAGGCTCTCATCCACGCTCTTGAGAACAATCTCAAGGAGGAGGTGGGGGCACGGCCCAACACCCCACAATTCCTGCTGCTTTTAACTGATGGGAAATCTCAGGATGATGCCATTGCCGCAGCCAACAGGCTGAAGAATGCTGGCGTGGAGATCATTGCTATAGGTGTGAAAAATGCAGATGAGGCAGAGTTGAGGCAGGTGGCGTCTGAACCACTGGAGCTGAATGTGTATAACGTGAATGATTTTCCTCTGCTCAGTAAACTGGTGGGAAGACTAGCACGCATCCTCTGTGGCAAGATTGAAGACCGTATTAAAGCAAAGAGAATGGAGCGACCCACTCAGGACCCAGTCCTGTCCTATCCCAGTCCAACTGATCTGCAGTACGTAGGACTAGGCTCACGAGAGGTGCGCCTGCGTTGGACAGCCCCCAGCAAAGGTCCCCAACAGTACAGAGTAGTGTACCACACTGCTGAAGGACAGAGTCTGAAAGAGGTGGTGGTGAATGGAACAAGCTCCACAGCACTGCTGACAGGACTGTCCTCACAGACACAGTACCACCTGTCCATCTTCCCCGTCTATGACAACAATGTGGGCTCTGCTCTCAGAGGCACCTTCACTACCAGCCTGCGAGTACGCTGGCAACCGGCTGCAGGAGCCACACAGTACATGGCTTTATACTCCGCACTCAATGATGGAGAGCCTGATGATGCCAAAGAGGTGAAGTTTGGACCTGCTCAGACAGATGTGGAGTTGGTAGATCTGATGCCATCCACAGATTATTCAGTCACACTTTATGCTTTGTATGATGAGGACCCTAGTGACCCAATCACAGCCATCGGCACCACATTCCCGTTGCCGTCTCCTCTCAGTTTGCAATTTCCCATGGTCAGTCATAGCACTCTGAAGGTCACATGGGTCCCTGGAGCTGTCGATGTTCCTGCACACCGCATCATCTACAGCACCAATCACGGCAGTGATGTTAAGCAGGTGGAGGTCAAAGGTGTGAACACAGTGTTGCTGCAGAATCTGTCTTCCCTCTCCAGGTATCTGGTGTCAGTCCAGTCACTCTATGAAAAGGGCCTGTCTACTCCTATCACAGCCAATGTCACTACCTTGAGGGTCCCGGCTCCCTCAGATCTAAGAGTCACTAACTTCTCCGGCAGTGACATAACAGTGCGATGGGAAGCCGCGGCAGATGACGTGGTCTCTTATCTCATCAAATGGATCTCCCTCAGTGGAGGAGACCTCAGGCAGCTGACAGTAGATGGGGAGAGTGAGGGGGCAATCTTGGAAGAGGTTGAGGAAGATAAGGAATATCAGATTTCACTCTCTGCATCATATGCCGATGGGGCTCAGAGTGAGGCTGTGGCCATTCGATACAGCACCTTGTCTGGAGGTGGTCCGAGCAGTTTATCCATCTCAGAGGAGACAGCAGTCAGTATGCTGGTCACCTGGGTTCACCCCAATGCCCATGTGCTGCAGTACCGTGTGTCTTACACTCCCCTCAATGGGGATGCGAGGGAGAACTCAGTGTCATTGCCAGGCAGAGAGAGGCGCGTCCTGCTGCAGAATCTGCAGCCAGACACTCGTTACAGTGTGCTGGTGACTGCTGAGTACCGCAGCAGAGAGGGCGGCAGTGCCTCAGCCCAGGGGAAAACCACCAGCCTGCGAGTGAGCAGCGTGAGTGTGGTACGGTCTGACCACTCCAGTATATGTGTGTCCTGGAGGCCCGTACCAGCAGTCAGTGGTTATCGCATAGTCATCCAGGCCCTCAGAGATAAACAGACTAAGGAGGAAGTAGTAGATGCTGGCAGCAGCAGTCACTGTTTCTCTGAGCTGCAGTCTGAAACTGTGTACCGCATCAGTGTGCACTCCCGTCTGGGAACAGTAGAGGGCACTGCTGTTACCATCCTTCACCCCACAGGATTCAACATGATGGAAGCATTCGGTCTGACTCAGAGAGCTCACTCTACTATTGAGGGTGTGGCAGCTGAACCTTTCATCTTCAGCTCCTTGCCCAGTTACACCCTCTATAGAGACGTACAGCTGACCCAGAGCACAGGCTTTATCCACCCGGCTGGATTTTCTCCAGAACACACCATCAGCATGGCCTTTAGGCTCTTGCAGGATTCACCCAGGGAACCCTTCGCCCTCTGGCAGCTCACGGACAATGACTTCCAGCCCAAGATGGGGGTAGTGCTGGACCCTGAGAAGAAGCTTCTGCTGTATTTCAGTCTGGACTACAGAGGAGAGATACAGGAACTGACCTTTGACCAGCCACAAGTCCACTCGGTTTTCTACGGCAGTTTTCATAAGATCCATTTGTCAGTCAGTCAGGTGAGCGTATCACTGTCTGTAGACTGCCAGAGGGTTGGTGAGCGGCCCGCACGTCCCTTGGGAACTTTGCCTACTGATGGCTTTGAGATGCTGGGAAAACTAGTGAGGACACGTGGACCTCACAGCGGATCTGCAGCTCTGCAGTCCTTTGAGATTGTGTGCAACACTACTTGGGCATCAGAAGACAGCTGCTGTGATCTGCCCTCACAGAGAGACGAGGAGAGCTGTCCAGCTCCTGCATATGCTTGCACCTGCACCACCGATGTCCCTGGAGCACCTGGAGACATCGGGCCACCTGGGAGACCTGGCCCTCGTGGGGAGAAGGGAGAAAAAGGAGAGTTGGGCCAAAAGGGTGAGGTGGGCCCACCTGGTAAACCGGGCCCTGAAGGTGGCTTTGGCACTCTTGGACCTGCTGGTCCACGGGGAATAACTGTAATGGGCAAAGTGGTACGTCTACACTTGTTCTACAGAGAAGATCTAGTGCATATGAGCATTTGGAACAGATTAAAAACATCTCTCTTTGTCTATATAAGGGTCCACCAGGAGCAAGAGGGGAAAAAGGAGATATCGGAAGACCTGGGAGTCAGGGTTTACCAGGACCTCCTGGTCCAAAAGGTGAAGAGGGCATCCCTGGTCCTAAGGCAAGTCTCTGTGTGGCTCAAGGCTGTTATTGTCCAATGTGCATTTGAAATGTTCAGTCTGTCATTCATCTTTCTGTCTATAAATTTCCCACAGGGCACCAGAGGAGTGGAGGGTAACATTGGCAGCCCAGGAATCACAGGGCCAAGAGGCGAGCCACAATCTCTTGCTGTGATCTTCCAGCTTGTTACACAGGCCTGTGAAAAGCTTGTGCACAATGAAGTGCTGAAGTTGGATGTTTTTCTGAATGAGATGAATCGAAAGCCAGTGCCCATCCAGGAACCAGTAGCGCCACCAGGAGAGCCTGGTATACCAGGGGGAAGAGGGGCACCTGGATCCAGAGGCCCTCAGGGGCGACAAGGAAGCAGAGGGGAGTCTGGGAGACCTGGGTACCCTGGTGAGCAGGGACGCAGAGGTATGCCGGGTGAGAAGGGGTCTCCAGGAGCAAATATGCTGGGACCACAGGGAATAAAGGGTTTTGCAGGACCTCCAGGTGAAAGTAAAACAGGGGAACCAGGTCCCAAAGGCGAGGATGGTAAAGCAGGACCTCCAGGTATTCCAGGAGCTTCAGGTCAGCGAGGAGAAGTCGGACCCCCTGGTGTATGTGACAACAGTGGATGTTATCAAGGACCCCTGGCTGCAGACGCCAACATGGCGAGCCGTAGAGGCAAACCGAAGACTCGGGAGCAGTCTGACAAATATTCTGTTTTGTTACCAACCTACAACGAGCGAGAAAACCTCCCACTGATTGTGTGGTTGCTGGTGAAGTACTTCGGCGAGAGTGGCTACAACTACGAGATCATAGTCATTGATGATGGTAGTCCAGACGGAACACTGCAGATCGCCGAGCAGCTGCAGAAGATATACGGCGCGGATAAAATTCTCCTGAGACCGCGAGCAGAAAAACTGGGATTAGGAACGGCTTACATCCACGGCATTAAACATGCGTCAGGAAACTTCGTTATCATTATGGATGCAGATCTCTCACATCATCCAAAGTTTATCCCACAGTTCATTGAAAAACAGAAGGAGGGTGGATTTGACCTGGTGTCTGGCACAAGGTACAGAGGAGACGGTGGTGTGTATGGATGGGATCTGCGCCGGAAACTCATCAGTCGTGGGGCAAACTTTGTCACACAAGTGCTGCTCAGACCAGGAGCATCTGATCTCACAGGGAGTTTTAGACTTTATAAGAAAGAGGTTCTTGAAAAACTAGTAGAGCAGTGTGTGTCAAAAGGCTACGTGTTCCAGATGGAGATGATTGTCCGTGCGAGACAGCTGGGATATACAGTGGGGGAGGTTCCTATTTCATTTGTGGATCGTGTTTATGGGGAGTCCAAATTAGGTGGAAATGAAATCGTCTCCTTCCTGAAAGGATTGCTCACTCTTTTTGCCACTACATGACCTTTGACCTCATTTGGTTGTGTTTAGTGTTGTGATGCATGATCAGCACTTACTGGATAACTGTAGTGGATAAGCTCATTATGTTATATGTTATATGTTGCATATCAGGCTACAGTAGCTTTTGGATTTCTTGGATTTGCCACCTTCCATCTTTCACTTAGTCTGGTTAATTTTTAGACTATATTTTGAAATGTACATTAAAATGTAAAAACACATTTTA

Function

symbol description
slc35c2 Predicted to be located in extracellular region and membrane. Predicted to be integral component of membrane. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space. Is expressed in neuromast. Orthologous to human SLC35C2 (solute carrier family 35 member C2).
col20a1 Predicted to be located in endoplasmic reticulum lumen and extracellular region. Predicted to be part of collagen trimer. Predicted to be active in collagen-containing extracellular matrix and extracellular space.

GO:

id name namespace
GO:0016021 integral component of membrane cellular_component

KEGG:

id description
K15280 SLC35C2; solute carrier family 35, member C2

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06325915_06358454.mRNA True 6230 mRNA 0.50 42 6325074 6358674

Neighbor

gene id symbol gene type direction distance location
CI01000001_06309664_06321614 SLC35C2 coding upstream 2986 6309361 ~ 6322088 (+)
CI01000001_06303405_06305351 TNNC2 coding upstream 19723 6303405 ~ 6305351 (+)
CI01000001_06297032_06300530 TNNC2, TNNC2.L coding upstream 24414 6297032 ~ 6300660 (+)
CI01000001_06121398_06124748 TNNC1.L, TNNC1B, TNNC1, TNNC1A coding upstream 200122 6121398 ~ 6124952 (+)
CI01000001_06040916_06041645 NA coding upstream 282464 6040916 ~ 6042610 (+)
CI01000001_06363645_06370085 ADNP coding downstream 4971 6363645 ~ 6370101 (+)
CI01000001_06420606_06430104 CAMKVL coding downstream 61932 6420606 ~ 6430133 (+)
CI01000001_06442969_06455699 UBA1 coding downstream 84295 6442969 ~ 6455859 (+)
CI01000001_06458769_06470107 ARHGEF3L coding downstream 100095 6458769 ~ 6470495 (+)
CI01000001_06474891_06479887 USP21 coding downstream 116217 6474891 ~ 6480025 (+)
G16212 NA non-coding upstream 42522 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 97929 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 116294 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 116720 6207632 ~ 6208354 (+)
G16172 NA non-coding upstream 147942 6176623 ~ 6177132 (+)
G16247 NA non-coding downstream 74410 6433084 ~ 6433328 (+)
G16257 NA non-coding downstream 156447 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 313508 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 365135 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 441494 6800168 ~ 6800381 (+)
G15995 NA other upstream 610123 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1035118 5279837 ~ 5287698 (+)
G15794 NA other upstream 1260370 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2703623 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4654070 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1173898 7531541 ~ 7540586 (+)
G17234 NA other downstream 1673450 8032124 ~ 8032483 (+)
G17353 NA other downstream 2857348 9216022 ~ 9228859 (+)
G17354 NA other downstream 2875789 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 3059654 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location