Gene
RNA
| Item | Value |
|---|---|
| gene id | CI01000001_06474891_06479887 |
| gene name | USP21 |
| gene type | coding |
| species | grasscarp (Ctenopharyngodon idella) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | CI01000001 |
| NCBI id | null |
| chromosome length | 13537560 |
| location | 6474891 ~ 6480025 (+) |
| genome version | v1_2015/06_NatureGenetics_grasscarp_Genome |
| symbol | description |
|---|---|
| usp21 | Predicted to enable thiol-dependent deubiquitinase. Acts upstream of or within central nervous system morphogenesis and cranial skeletal system development. Orthologous to human USP21 (ubiquitin specific peptidase 21). |
| id | name | namespace |
|---|---|---|
| GO:0021551 | central nervous system morphogenesis | biological_process |
| id | description |
|---|---|
| K11833 | USP2; ubiquitin carboxyl-terminal hydrolase 2 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| CI01000001_06474891_06479887.mRNA | True | 1330 | mRNA | 0.45 | 11 | 6474891 | 6480025 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| CI01000001_06458769_06470107 | ARHGEF3L | coding | upstream | 4396 | 6458769 ~ 6470495 (+) |
| CI01000001_06442969_06455699 | UBA1 | coding | upstream | 19032 | 6442969 ~ 6455859 (+) |
| CI01000001_06420606_06430104 | CAMKVL | coding | upstream | 44758 | 6420606 ~ 6430133 (+) |
| CI01000001_06363645_06370085 | ADNP | coding | upstream | 104790 | 6363645 ~ 6370101 (+) |
| CI01000001_06325915_06358454 | SLC35C2, COL20A1 | coding | upstream | 116217 | 6325074 ~ 6358674 (+) |
| CI01000001_06484769_06502296 | CCDC30 | coding | downstream | 4744 | 6484769 ~ 6504149 (+) |
| CI01000001_06519105_06525958 | NA | coding | downstream | 38608 | 6518633 ~ 6526120 (+) |
| CI01000001_06531852_06539325 | TTC34 | coding | downstream | 51827 | 6531852 ~ 6539493 (+) |
| CI01000001_06541966_06547403 | NA | coding | downstream | 61941 | 6541966 ~ 6547745 (+) |
| CI01000001_06564886_06568295 | NA | coding | downstream | 84861 | 6564886 ~ 6568295 (+) |
| G16247 | NA | non-coding | upstream | 41563 | 6433084 ~ 6433328 (+) |
| G16212 | NA | non-coding | upstream | 192339 | 6282339 ~ 6282552 (+) |
| G16193 | NA | non-coding | upstream | 247746 | 6226859 ~ 6227145 (+) |
| G16189 | NA | non-coding | upstream | 266111 | 6208552 ~ 6208780 (+) |
| G16188 | NA | non-coding | upstream | 266537 | 6207632 ~ 6208354 (+) |
| G16257 | NA | non-coding | downstream | 35096 | 6515121 ~ 6515398 (+) |
| G16284 | NA | non-coding | downstream | 192157 | 6672182 ~ 6673511 (+) |
| CI01000001_06718133_06747744 | KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 | non-coding | downstream | 243784 | 6717159 ~ 6747744 (+) |
| G16317 | NA | non-coding | downstream | 320143 | 6800168 ~ 6800381 (+) |
| CI01000001_06893068_06917387 | IFFO2A | non-coding | downstream | 435762 | 6893068 ~ 6917660 (+) |
| G15995 | NA | other | upstream | 759940 | 5711885 ~ 5714951 (+) |
| CI01000001_05279884_05287123 | NA | other | upstream | 1184935 | 5279837 ~ 5287698 (+) |
| G15794 | NA | other | upstream | 1410187 | 5061218 ~ 5064704 (+) |
| CI01000001_03618075_03620436 | NA | other | upstream | 2853440 | 3618075 ~ 3621451 (+) |
| CI01000001_01668334_01670035 | CAMK2N1B | other | upstream | 4803887 | 1667762 ~ 1671167 (+) |
| CI01000001_07531945_07539781 | NA | other | downstream | 1052547 | 7531541 ~ 7540586 (+) |
| G17234 | NA | other | downstream | 1552099 | 8032124 ~ 8032483 (+) |
| G17353 | NA | other | downstream | 2735997 | 9216022 ~ 9228859 (+) |
| G17354 | NA | other | downstream | 2754438 | 9234463 ~ 9240677 (+) |
| CI01000001_09435836_09436037 | NA | other | downstream | 2938303 | 9435836 ~ 9436373 (+) |
| species | gene id | symbol | gene type | chromosome | NCBI id | location |
|---|
