CI01000001_06531852_06539325 (TTC34)


Basic Information

Item Value
gene id CI01000001_06531852_06539325
gene name TTC34
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6531852 ~ 6539493 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06531852_06539325.mRNA
ATGAATGGCATACATAAAGGTGCAGCTGAACTGTGCAGAGAGGGGGACAAAATATTGCTCTCTGGGGACCCTGGCAGAGCTGCGGCTCTGTACACCCATGCTTTTGGAAATCATGCAGGATCCACTGTAGGACACATGCGTGGCCTCGACACAGGTTGTTTGGAGGAGGTGATCTCAACTCTGGAGGCCTGGCTTGATGATGTTTCGCACAACTCAATTGAGGGTCTGAGCAAAGGTCTTATTGCTGTATTTCTGTCTACATTATGCCCCAATAATATTTCTGCTTCTCTTTATAAAATGGAGTCTGTCCTGCAGGGGACAGGTCATGCCTCAGATGAGATTTTCGCACGATGTTCTGCTCTTCTAGAGAGAAAACAAATGCCCCAACCTGTGGGCCACACACGGTTAGTTCTGGAGTTAACTAGAGCTCTGGCCAGCTTGCTCTCAGACCCTCAAAATCCCAAAGGTCCTCAGCTTTATCTGCAAGCCTTTCATGGAAATAAATCAGAAACTATTAGACTTGTTAAAGAAAGGCAAACTCAACATGTGGAGCTATTAATTAAAGCCTTTTATCAGCAAATGTCTCTGAGATATTCTATTCTTCAGATGAAGAAAGAATCGAGTCCTACACAAGCAAGTGACGACATCGATCCTACTAAAACTGTTGAGTTTTTACTTGCCATTTCACCTAATGACATCCAGGTGAGAGAGCTTCAAGCTGCAGTCTTGTTTTCATCAGGAAAGTTCACAGAAAGTGCAGAAGCTTTGTCGCTGGCTCTTAAACTAGGTGAATCACAGACCGAACATGTAATGGCACCAGAAAAAAGAGCTTGTTTACTGGTGGGCAGAGCAGCTGCTCATTTTTCAGCAGGAGGACGAGCAAAAGAAGTCTGCAAAGACCTGGGTGACGGCTTTGCACTTCATCCGGCAACAGCAAGACAGCAATTCCAGAGCCTTTTCTCAGACAACGGTATAGGGTTGGCTGCTCGCATCCAGCTGCGCCAACAGGCCGAGAAGGGTGTCTTGGAGTTCAGGGAGGCAGTTCTTATGAGGCCTGACCTTCGGTCTTCGAAAGGAGTGGAGTTGTTGGATCCCGTTATTGCTCAGCTGCGAGCTCTCTGCCACTTGGAGTCAGACGGTGGAGGTAGGGAACTGCGGGTGCGTCTGGCAGACTGCCTCCTCTTGCGTGGGGAACATAAAGAAGCCCTTTCCATAAGTAGCCAGCTAGCCGCTGCAGCTCCAGCCCAGCAGAGCTACCAGAACACCGTGCAAGTGCTCAGAGGGTTTTCTCGACTCTTCACTGAGGACCACAAAGGCGCTCTGGAAGATTTCCAAGCGGTTATTGAGCATAGTACTCCTCACCCGCCCAGCTGTGTCCGTGCGCTCTGTGGTAGGGGTGTCCTGCGTATGATGGCTGGCTCACACTACCTTACTGCTCTAGATTATGTTACGGCGAGCCGATTACAGCTGCAGGACACCGCTGTAAGTGTTAGGTGCCTGGTGCCATGGAACTACCGTGGGTTGCTGTGCACTGTGCTGCTGGAACAGGGAAGAGTTATGCTTGAGGGGACTGAAGAACAAAAAGCTGACTCAAATCCTACAGCACAACAAGAGCATGAGGAAGGTCATGCCAACAACAAACAGAGGTCTCCCGCAGGTGTGCACGCTCTTGCTCTTCTACTAATGGAGTTACAGCCCGGTGCCGATGGACCCCAGATTCTCACAGCAGATGCTCTATACCAGTTGGGTCGTGTTGAGGAGGCTTACCGTCTTCTTCTCAACATTGAGCACACAGCCCCACGACCACCGATTCTCGCACGCCTTGCAATACTGCAGCTGCATCGTGGCTTCCTCTATGATGCCTATCAGCTACTGAAGAAGCTGATTAATTCAGGAGACACCAGCTGTCTACGTCCCCTTCTCTCTGTAACGTCTTTACAAGACCGAGCACTTCTAGAAAAACATTGTCTCTCTGCTTCCAAACGTATACTGTGTGGCCAACAAGCAGAAAGTGCAATAAGGGAAGCTGTGGCCTATTTGTCCATTGCCATCATGGCTTCAGGTGGTGGAGCAATAGATTCCCTGCTGGAGAGAGCAAGATGTTATGCTCTATTGGGCCAATGGAAGACGGCTATCTATGACTTCACTGCGATCCTTAAAGAGCACCCAGACCACGTGCAGGCTTTGTGTGGAAGAGGATTTACTTATCTTATGCTGAACCAGCAGAAGGAATGCACACTAGACATACTAGTTGCCCTTCAGTGTGGTGCTGAGGAGGTCACTCAGAGCATGCTGTCGCTTAAAGACAAAGCGAAGAGACTTGTCAGTGAATGGTTGGGTCAGCACTGTCGCAGCAGCCTGTCAGACACTCTGTTGGCCAACCCTGTACCCTGCCGGGAGGAGCACCTGCGAGAGGCCTTTTTAATTGGTGGAGCACTAATGAACACTGACTGCAGGGAACCCAGGTGGCACCTCCTGTACATAGATACACTACTTGCCAAAGGGGAGGTGAATGCTGCAGGAGCACACCTGAAGCAGGTGTTTGGTCAAGAGCCTCGAGATGTCGCAGCTAAGGCCAGATGGGGTGTCGTGAAGGCCTGGCAGCAGAACTACAAAGTGGCTGTCAACTATCTGAGTGTGGTGGCTGAGAAAGATCCAGAAACTCTAGACTTTCTAATCAATCTCATGCAGTCAGCTCAAAGAAAACGCTTGGCACAGGCAGCATCTCAGCAGGCCAGCATTGTTTCTGAAAGTGGTCAGTGGGAGCACGCTTTAGCCCTCCTTACACTAGCAGTGCGAGCGGTCAATGAGATGAAGCTTCAGTACCTCAGGCAGCGTGCAGCCTGCCTGGCCCACCTGGGCCTCCACGACAGGGCCGTGTCTGATTTGAGTAAGGTCATCCAGGGCCACAGTGCAGATGCGAGTGGGGAGCCAAGGGTTTGGGCAGAGGACCTTTGCCGCCGAGGCCGTAGTCTGCTGTTGTGTTCCCATGAAGAGTCTGGCTTACAGGACATTTCTCAAGCCCTGGATCTGCACGAGGGACAGGCTCTGCTGTGTGTGGAGGCTGGTCTGGGAACACAACGCCTTGCTGAAAAGTTCCTGCGCTTTGCCCTGCAGAACTATGGAGAGCAGAAACTTGACAAAGCTTGGCTTCTGACAGAGACTGGGCTTAAAGTGGACAGTGGCCATGTAGAACTGCGCAGACTGAGGGCTAGAATAAAACGAGAAGTCTCTGGTCCATGTACTGTCCACTAGAGATGAAACATACATAAGATGTTTAAATGTGAACCGATAGCGACAGAATGGTTTATGTCTTTGTATTACCATAATTTATGGTTAATCAGGCAAACATAAGAGCAAGAATTTCTAATCATAAGAATGCAGTATTGTAACTTACAGTCTCTTACAATTTACCTTTGTGTA

Function

symbol description
ttc34 Orthologous to human TTC34 (tetratricopeptide repeat domain 34).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06531852_06539325.mRNA True 3423 mRNA 0.50 7 6531852 6539493

Neighbor

gene id symbol gene type direction distance location
CI01000001_06519105_06525958 NA coding upstream 5732 6518633 ~ 6526120 (+)
CI01000001_06484769_06502296 CCDC30 coding upstream 27703 6484769 ~ 6504149 (+)
CI01000001_06474891_06479887 USP21 coding upstream 51827 6474891 ~ 6480025 (+)
CI01000001_06458769_06470107 ARHGEF3L coding upstream 61357 6458769 ~ 6470495 (+)
CI01000001_06442969_06455699 UBA1 coding upstream 75993 6442969 ~ 6455859 (+)
CI01000001_06541966_06547403 NA coding downstream 2473 6541966 ~ 6547745 (+)
CI01000001_06564886_06568295 NA coding downstream 25393 6564886 ~ 6568295 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding downstream 43993 6583486 ~ 6641365 (+)
CI01000001_06700913_06706131 NA coding downstream 161318 6700811 ~ 6706423 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 coding downstream 177666 6717159 ~ 6747744 (+)
G16257 NA non-coding upstream 16454 6515121 ~ 6515398 (+)
G16247 NA non-coding upstream 98524 6433084 ~ 6433328 (+)
G16212 NA non-coding upstream 249300 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 304707 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 323072 6208552 ~ 6208780 (+)
G16284 NA non-coding downstream 132689 6672182 ~ 6673511 (+)
G16317 NA non-coding downstream 260675 6800168 ~ 6800381 (+)
CI01000001_06893068_06917387 IFFO2A non-coding downstream 376294 6893068 ~ 6917660 (+)
G16937 NA non-coding downstream 396649 6936142 ~ 6946151 (+)
G15995 NA other upstream 816901 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1241896 5279837 ~ 5287698 (+)
G15794 NA other upstream 1467148 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2910401 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4860848 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 993079 7531541 ~ 7540586 (+)
G17234 NA other downstream 1492631 8032124 ~ 8032483 (+)
G17353 NA other downstream 2676529 9216022 ~ 9228859 (+)
G17354 NA other downstream 2694970 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2878835 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021641 ttc34 coding NC_007134.7 CM002907.2 20795781 ~ 20800958 (+)