CI01000001_06484769_06502296 (CCDC30)


Basic Information

Item Value
gene id CI01000001_06484769_06502296
gene name CCDC30
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6484769 ~ 6504149 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06484769_06502296.mRNA
GAAAAGGAGCTGGACGAGATCACCCTGCGCTTGCACAGGGACGGTGTGTCCCCTGAGGCTTCAGCAGAGGAGCGAGAGCGGCACCTGTGGTGTTTGCTCCAGCGCAGTGAGGGCAGCCTGACTGCAGCCACTGAAGACCTGCAGACTTTGCGCACACAGCAGGCCAGCGAGATGAGAGAGGTGGAAAATTACGTGGAGCATATTCGAAACATGCTGGAGGAGCGGGAATCTCTCACAGCGGAGTACGAACGTGACAACGAACAGCTCCGTGCTGAACTCGCTCTAATGAAACACCAACAGGACTCCCAATGTAAGGAGGTGGTAGAGATGCTGGAGCAGGAGGGTCTAGCAGAGATCAGCCAAAGCAGTGCCAGTGAGCAAGTGGCCTATTTGCTGGTGGAGAGAGTCACTTTGCTGGAGAGACTGGAGGCTGCTGAAAGAAAGCTGGACACCCAGACCCTCACCGGCAACCTCAGAGAGGTGCATCTACAGGAAGAGCTGGATCATATCCGTCACGCACTGGAAGAGGAACTCAGACAGCAAAAGGATAGCTTGAATAAGGAGTCATCAGTTCAAAGTCCTTGGAGGAAGTTCTTTGGTGTGCGCAAGGCGTCACTTAGAGCACAGAACCTTCCTGCCCACGGTGAAGAACTCGGTAGAGAGCGCACAGAACGGCAGAAGCTAGAAAGGGATCTGGAAGAGGCGTCAAGTCGTCTTGCTATGGCACATAAAGAGATTCGCCACCTGACAGATGAACTAGATGTCGCTCGTAAGGTCCAAAACTTGTCTGTACCTGACCTGCAGAAAACTGGGGAGGAAGTGGAGCAGTTAAAACAGGAAGTGGACAAGCTTAAACAGTGTGATATGGTGGAGCTGCAGAAGGCCAAGGAACGCAATGAGCGACTGGATGGGGAGATCCGTGTGTTGAGGGATAGAGATGTTGGGAATAATGTGGATTTATCTCTGGCTCCTGATGACGAGATACTCCACAAAAGGTGTCGAAGAGAGTCTGAAGATAAGGACAGCCGTCTTCGAGAGCTGGAGAGGAGGTTGCAGAAGCAGCAGCGGGAGCACGAGGAGCTGGTGGAGCGGAATGAGGAGCTGGAGGCGCTGTTGGGGGAGGCGCAGAACGCAGCCAAAGACGAGCGAGAGCATCATGAGTGTGAGATAGAGGGGTTACAGAGAAAGATTAAAAGTATAGAGGAAGAACTGAGTAAGAGGGAAACCAAGAAAACTGAGAAGAAAGATGAAGATCAGGTTCGAGGGACTGACTCTGAGCTTAGTGAGAGCATTCAAGAAAGACTGAAGTTCCTCGAGGGTCGTCTTGCTGAAGAAAAAGGTTGGAGGAAACAGCTGGAGGTGGATCTATCTGTAGCCAAGGCTGCTCTCAAAAAGGAAAAAGAGGTCATGCAAAGAGACCATGAGGAGCTGAAGAGGTTACGTGTGGAGGTCCAGAGACTAGAGGTAGAATGTCGACAAGGGAAGACACTTAACAAGAACCTTACGCAGATTAAAGGAGAAAAGGGAATTTTGGAAGAAAAGGTGGCCCAGTTGGAGCGTGCTCAGACACGGCTCCAGGACAACCTGACACTTCAGACAGAGAACAGCCGGGCCGAAGAGGACCTAAGAGACAGCAGGGGACAGGTGGCAGAGCTTAAGTCCATGGTGGACAAGCTGAGAACAGAACTGACTCGACTAGAGAAGGAGCACAACACTCTAAGGGATGAGCTGATGGAGAAGCGCGGGCAAGTGATGCAGCTACAGAGGGAGCTCAGCGAGAAATCCCATGAGAGGCTTCAGACTGACGGGGAGAAAGAGAGACTTAGTCTGGAGCTCCTGCATGTGAAACAGCAGCTCCAGTATACCAGAGAGCAGATACCCAGAGCATCACAGGAGCACACGGCCAACCACAAGCCTGCTGCACAGGAGGGGCTTTGTCAGCTGGCCTGTGTGAAGTCAGAGATGAGTAAGCTACAATCCACCCTGGAGGAGGAGAGACAGCTGGCCGGCCAACACCAGCTGGCCCTGCAGGCCCAGATCAGTGAAGCTCAGGCCCGGGCTAAGGCTCAGGACTCACTCATACAACAGAAAGGAGAAGAGAGCAAACAGCTGAGACAGGACCTGCAGAGAACCCAGCACCTCTTCACCTCTGCTGAGCGAGAGCTACGCTATGAGAGAGAGAAAAATCTAGACCTTAAGAGACACAATGCACTCCTAGACCAGGAGAAGATCAAGCTGTGTGCAGAGCTGAAGCAGGCCCAGGCCAAAATAGCCCAGCAGGAGGGAAGTGCAGCAGGACAGGTGGCAGAGCTGGAGAGACTCCAGCAGAGAGCCAGAGATCTGGAGCTGGAGGTGGCCAGAAGCGCTCAAAACCGGCAGACTAACAGCAGCTTGGTGGAGGAGCTAAATTCAGAGAGGGCACGTGTGATTGCTGCTGACAAGAAGGTCGTAGAACTGCAGCAGCAACTGAAGAACGCTCTGCACCAGCTGCGCCTGGAGGAGGCCCGAGCGGGAGAGACCAGCAAACTAGAGAGAGACACCAGAGACATGTCTGATAACCTGTCTGCCCTCAGAGTCCGACTGCAAGAGGATCAACTACAGAGGAAATTACTTGAGCAGAAAGACGAGGAACTCCAGCAGCAAGTGCGTTTATTGCGGGCAAAGGAGGCGACTCTGACACGCACCAACATGGAGATGTCACACCGCACACAGGAGCTGGAGACACGGCTGCAGGTGCTAGAGAGTGAACTTAACACGGCTAGAGAAGAGCAGAGAAGCAGTCAGAAGAGCTGCCACAGGCTGGAAGAACAGCTTCTGTCTTCCCAACATGAGTCTGAGAGACTGCAGGAGGAACTGAAGCTGGTTGTTCAGCAGCTCGACACTCACATCAGGAGACACAACGAGAAACATTCTCAGCACAAAACCAAGTTGCGCAAAGCTAAACAGATCTTCATGAAGACAGTCTCCCAACATGAGCACAGAATCCAGCAGCTGGAGAACGATTTGGCTCTTGTGACAAGTCTCTCAGAGAAAGAGAAGGACTGGATTAGGACTGTGACAGAAGAAAACGATCAGCTCCTCTTGGAGAGACGAGAACTTCTGCAGCGAATAAGTGAAGCTGAGGAGATGGGAAACAATGGACTGAGAACTGCCACTAGCATCCAGCAGAGAGTTAAATTCCTGGAGATGGAGAATAAACAGCTGCAAGAAAAAACTCTAACACTGGCCAATCAGATAGGAATTTTAGATCGTGCATTGAGAAACCTTCAGTCGATGTGTACTGTTGAGGAGGTCAAGAAAATGTTTCCTTCTGGAGCTCATCATGATAGCCTGTTGCGGACATCAACTCCGAGTCCACAGCCTGGGCTCTGTGACTCATGGGGAATATTGGATGCCATTCGCAAAGTCAAAGTGGGTGAAAGTGGAGTGAAGAGCCTGGAGATCTCCTCGTCTGTGCCCGTTTCACAGTCCACTGAGATAGGCTACCTGAATGTGACCTCACCTGTGGCTCCCAACAGCAGGTTAGAGCAGGAAGAGAGTCTCAGTGCCACAAGCGATGAGGCCTGAGGGAGTTACAAAGACTGTGAAATGCCATTACAGAGTTTGCCAATCTGAAAAGTCACTGGATCAGTCAAAGCTTAAAAATAAGCAACTGTGGAAGGGTCAAATGTTTAGATGGGTAAAACAGACAACTTGCTCAAGAGGCACCATGACTGTGTGTCATGTTTTAGGTCTTCAGTTCATTTCCTTATACTTTATTTGTTTTTTAAAGCGAGTGTGAAGAGATGTATTCTTGCTCAGGCTCATATCACCTGTGTTGAATTCAGTTACATTGCCTTTGTGGCTCACATAGAGACAGGCTAGAATGCATGAGATTTTATATCATTCACAAACATGACACTTCATTGGATGCTTTGGTCAATAGCCTTGTCACATCTATAAGATGCCATATGTATTTTTTTTATACATTTACCCTATAATGGTACAACTGTGGAAAAGCACTTAAAGCACTATTAATTTGTGTTCAGATGGTACCATCTGCAGGTGTTTACAACTGAAATGCACTATTGCCTTTGGATAAGCAGCAAGTATTTGAGATCAAGTTGAAATCAAGTGTTTGTTTTGTGAGATTTGGTGTAAATGTCTCCCGATACATTTTGAAACCCTTTTATGTGTCAGCAGACCTTTTCTCATTTCAGTGCTGATTTTAGGTGAAAAAATGGTAAAATGTTACATGGAGCTGAGAGTACTACACTCCTTTGTAGCTGAAAGCATGTACACTACCATTTAAAGTTTTGGGGTCAGTAAGATAGATTGAAAGAAATTTATACTTTTATTCAGCAAGGATACATTACATTTATCAAAAGAGGAAGTAGACTTTTACATTGTTACAAAAAATTTCTATTTCAAATAAATGCAGTTCTTTTGAACTTTCTGTTCTTCAAAGAACCGTGACGAAAACATATCACAGTTTCCACAAAAGAAAATTATTTTTTTTATCAGCGTTGAAAATAGTTATGCTGCTTAATGTTTCCACCAAATCATGCTGATTTCTGAAGGATCATGTGACACTGAATACTGGAGTAATGATGCTGAAAATTCAGCTTTGCAATCACTGTAACAAATTCAAATTTATAATATATTTACAATAGAAAACATTTTTTGTTGTTCACAATATTACTGTTTTTAGATCAAATAAATGCAGACTTGGTGAGCATAGGAGACTTATTTCAGAAACATTAAAAAATCTTACCAACCCCAGTCTATTGAATGGTAGTGCATCTGTGTTTAGTTCACGGTGTAAAGACTTTTTCTATATTATCGTTTCAGTGGATAGTTGATCTATGTATTGCAACTTTTACATGTCCACTATTTTCTTTCAGTGAGAGGGCAAAAACTACAGCCATGTAATGACAGCATATTTATTTAGACCTCTGCTTATGTGTAGTATATGCTTAATTACTAATACAAGCAGTGTGGTTGTGATGAATAATTTTTTGCTGGAGAAAGGTTGGTCTGCTGGTATTATGTTTGGCTACTGACAAGAATGCAGGCCTGGTAGCATTAGCAACCTTACGGTATTGTTGTTTACTTATGGGGTGAAATGGGATTTTTTTTTTTAAATACTTTATTTTATACTCCCTTTGTGTTTTGTATATAGTCCTCTGAGACTGAAATGACCTGTGATCTGGGAGCAAAATCATCTGACAGATGAGAAATTGTATCACTTTGAGCTGTGGCAAAAGGATGAAGATCCTGCAGTTGTGCCTGTACATTATGAAAGCATTGTGCATTGTGTCCTGCTGCTATATGATATTAGGATGCAACTTTCACAAAATATTCCTATAGGGCTCATGTCATTTAAATTGCGACAGACATCAGTGTACATGGTACACACTGACAAAGCTTGTATTTTCTTA

Function

symbol description
ccdc30 Orthologous to human CCDC30 (coiled-coil domain containing 30).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06484769_06502296.mRNA True 5420 mRNA 0.46 26 6484769 6504149

Neighbor

gene id symbol gene type direction distance location
CI01000001_06474891_06479887 USP21 coding upstream 4744 6474891 ~ 6480025 (+)
CI01000001_06458769_06470107 ARHGEF3L coding upstream 14274 6458769 ~ 6470495 (+)
CI01000001_06442969_06455699 UBA1 coding upstream 28910 6442969 ~ 6455859 (+)
CI01000001_06420606_06430104 CAMKVL coding upstream 54636 6420606 ~ 6430133 (+)
CI01000001_06363645_06370085 ADNP coding upstream 114668 6363645 ~ 6370101 (+)
CI01000001_06519105_06525958 NA coding downstream 14484 6518633 ~ 6526120 (+)
CI01000001_06531852_06539325 TTC34 coding downstream 27703 6531852 ~ 6539493 (+)
CI01000001_06541966_06547403 NA coding downstream 37817 6541966 ~ 6547745 (+)
CI01000001_06564886_06568295 NA coding downstream 60737 6564886 ~ 6568295 (+)
CI01000001_06583486_06641365 PAX7, PAX7B, PAX7A coding downstream 79337 6583486 ~ 6641365 (+)
G16247 NA non-coding upstream 51441 6433084 ~ 6433328 (+)
G16212 NA non-coding upstream 202217 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 257624 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 275989 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 276415 6207632 ~ 6208354 (+)
G16257 NA non-coding downstream 10972 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 168033 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 219660 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 296019 6800168 ~ 6800381 (+)
CI01000001_06893068_06917387 IFFO2A non-coding downstream 411638 6893068 ~ 6917660 (+)
G15995 NA other upstream 769818 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1194813 5279837 ~ 5287698 (+)
G15794 NA other upstream 1420065 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2863318 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4813765 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1028423 7531541 ~ 7540586 (+)
G17234 NA other downstream 1527975 8032124 ~ 8032483 (+)
G17353 NA other downstream 2711873 9216022 ~ 9228859 (+)
G17354 NA other downstream 2730314 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2914179 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
zebrafish (Danio rerio) XLOC_021639 ccdc30 coding NC_007134.7 CM002907.2 20705849 ~ 20730155 (+)