CI01000001_06442969_06455699 (UBA1)


Basic Information

Item Value
gene id CI01000001_06442969_06455699
gene name UBA1
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000001
NCBI id null
chromosome length 13537560
location 6442969 ~ 6455859 (+)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000001_06442969_06455699.mRNA
ATGTCCAGCTCGCCGCTGTCCAAGAAGCGTCGCGTGTCAGGATCAGAGACGAAGACGGGATCCCACTGCTCCTCCTCTAACTCTGTCAGAACCGAACTGTCCCACACACCAGCTAACGGCATGGCTAAGAATGGAAATGATGCTGAGATCGACGAGGGTCTGTACTCCAGACAGCTGTACGTACTGGGCCATGATGCTATGAAGCGCATGCAGAGCTCCAATGTTCTGATCTCAGGGATGCGAGGTTTGGGTGTAGAAATAGCCAAGAATGTAATTCTGGGCGGAGTCAAGAGCGTCACCCTGCATGACCAGGGCGTGGCCGAGTGGAGGGACCTTTCATCACAGTTTTACCTCCGTGAAGAGGATCTTGGGAAGAACCGTGCAGATGTCAGTCAGACTCGACTGGCAGAACTGAACAGCTATGTGCCTGTAACCTCCTACACTGGCACCCTCACCAACGAATACCTGACCCAGTTTCAGGTTGTTGTGCTCACCAACTCTAGCCTCGATGAGCAGACACGCATCGGGGAATTCTGCCACAGTGATGGCATCAAGTTGATCGTAGCAGACACACGTGGGCTGTTTGGGCAACTATTCTGTGATTTTGGGGAGGAAATGTTAGTGTTTGACACCAATGGTGAGCAGCCGTTGAGCGCCATGATCTCAATGATCACAAAGGACAGCGCTGGTGTGGTTACGTGTCTGGATGAAGCACGACATGGATTTGAGAGTGGAGACTACGTCACTTTCACAGAAGTGCAGGGCATGACAGAGCTCAATGGTTGTGAACCAGTAGAGATCAAGACACTGGGTCCTTACACCTTCAGCATCTGTGACACAAGCTCATTCTCGGACTATGTGAGAGGTGGTATTGTCACGCAAGTGAAGATGCCTAAGAAAATTGCCTTTAAATCCCTGCCCTCCTCCATGGCCGAACCAGAGTTCATGCTGACTGATTTTGCCAAATTTGATCGTCCAGGCCAACTGCACGTGGGCTTTCAGGCGCTACATGCATTTGAGAAGAAGCACAGTCGTCTACCGAAGCCCTGGAGTCAGTCGGATGCGGACGAGTTTGTGACTCTGGCTGAAGAGGTGAACGCTGCACAGACCGGATCTGCCAAGCAGGAGCAGCTGGACCAGGCAATCATCAAAAAACTGTCCTGCATGGCTGCTGGAGACCTGGCACCCGTCAATGCCTTTATTGGTGGGCTTGCTGCCCAGGAGGTTATGAAGGCCTGCACAGGGAAGTTTATGCCCATCATGCAGTGGCTGTATTTTGATGCTGTGGAGTGCTTACCTGAGGCTGAGGATGTCGTTCTTACAGAGGAAGAGTGTGCACCTAGGAATTGCCGGTATGATGGCCAGATTGCTGTCTTTGGATCCAAGCTGCAAGAGCTGTTAGCCAAACAGCGATATTTTCTGGTTGGTGCTGGAGCCATCGGCTGTGAGCTGCTGAAAAACTTTGCCATGATGGGCTTGGCGAGCGGTGATGGGGAGGTCATAGTCACTGACATGGACACCATAGAGAAGTCCAATCTCAATCGACAGTTCCTCTTCAGGCCCTGGGATGTCACGAAGATGAAGAGCGAGACCGCCGCTGCAGCCGTGAAGCAGATGAACCCGACAGTCCGAATCACAGGCCATCAGAACCGTGTAGGGCCGGACACAGAGAAGGTTTATGATGATGACTTCTTTGAAAGCCTTGATGGAGTGGCAAATGCTCTTGACAATGTAGATGCCCGTATGTATATGGACCGGAGATGTGTGTACTACCGTAAGCCATTGCTGGAGTCTGGTACTCTAGGCACCAAAGGGAATGTGCAGGTGGTCATTCCCTTCCTGACAGAGTCATACAGCTCCAGCCAGGATCCTCCAGAAAAGTCCATTCCTATCTGCACACTCAAAAACTTCCCTAATGCAATCGAACACACCCTCCAGTGGGCTCGTGATGAGTTTGAGGGACTTTTCAAGCAGCCTGCTGAAAATGCCTTGCAGTATCTGACAGACCCAAAGTTTATGGAGCGCACGCTGAAGCTCCCTGGAGCTCAGCCGTTGGAGGTGCTGGAGGCAGTATACAAGAGCCTGGTGACAGACAAACCACGCAACTGGGAGGACTGTGTAGCTTGGGCTCGCAACCACTGGCAGTGTCAATATAACAACAACATCCGTCAGCTACTGCACAATTTCCCCCCAGACCAGCTTACCAGCTCTGGGGCGCCATTCTGGTCCGGCCCAAAAAGATGTCCTCATCCATTAGAATTCAGCACTAACAATGATCTTCACATGGACTACATTATGGCAGCAGCTAACTTATATGCCCAGTCATATGGCCTGCCGACCTCAACTGACCGCCCGGCTCTGACCAAGCTGCTGCAAGAAATTAAAGTGCCTGAGTTCACACCCAAGTCAGGAGTCAAGATCCACGTGTCTGATCAGGAGCTGCAGAGTGCCAATGCATCAGTCGATGACTCTAGGCTTGAAGAACTGAAGACACTGTTGCCTTCTGTAGAAGCGACTTCTCAGTTCAAGCTCTGTCCCATTGACTTTGAAAAGGACGATGACACAAACTTCCATATGGACTTCATTGTAGCGGCTTCTAATCTGAGAGCAGAGAACTATGACATTCCTCCTGCAGATAGACATAAGAGCAAGCTCATTGCTGGAAAAATCATTCCAGCCATCGCCACGACGACAGCTGCTGTGGTGGGTCTTGTGTGTCTGGAGCTGCTGAAGATTGTTCAGAAACACAAGAAGCTCGAGTCCTACAAGAACGGCTTCATGAACCTTGCTCTACCTTTCTTTGCCTTCTCTGAGCCCATAGCTGCCCCCAAGCACAAGTACTACGAAATTGATTGGACGCTTTGGGACCGTTTCGAGGTGAAGGGCATTCAGCCCAATGGAGAGGAAATGACACTCCGACAGTTCTTGGACTATTTCAAGAATGAACACAAACTGGAGATCACTATGCTCTCTCAGGGAGTTTCCATGCTCTACTCTTTCTTCATGCCTGCGGCCAAGCTTAAAGAAAGGCTGGAACTGCCGATGACTGAGATTGTGACCAAGGTGTCCAAGAAGAAACTGGGGAAGCATGTTAAAGCACTAGTTTTTGAGCTCTGCTGCAATGATGACACAGAAGAGGATGTCGAGGTCCCCTACGTCAGATACACCATCCGCTGAGAGGGCTGTTGGGGTAGGGAAGGGGACATGTCGGAGGAGGGAGAGGGCGGCCCACTGGGAATGGGGAGTATCAGTATGCTTGGAGAGCCCAAAGAGAAATCAATCTTTTTTTATTTTAATTTTTTTTATTTTTTTATTTAGTTACTGAATAATATAAGAA

Function

symbol description
uba1 Predicted to enable ubiquitin activating enzyme activity. Acts upstream of or within axonogenesis. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in VEXAS syndrome and X-linked spinal muscular atrophy 2. Orthologous to human UBA1 (ubiquitin like modifier activating enzyme 1).

GO:

id name namespace
GO:0016874 ligase activity molecular_function

KEGG:

id description
K03178 UBE1, UBA1; ubiquitin-activating enzyme E1

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000001_06442969_06455699.mRNA True 3337 mRNA 0.50 25 6442969 6455859

Neighbor

gene id symbol gene type direction distance location
CI01000001_06420606_06430104 CAMKVL coding upstream 12836 6420606 ~ 6430133 (+)
CI01000001_06363645_06370085 ADNP coding upstream 72868 6363645 ~ 6370101 (+)
CI01000001_06325915_06358454 SLC35C2, COL20A1 coding upstream 84295 6325074 ~ 6358674 (+)
CI01000001_06309664_06321614 SLC35C2 coding upstream 120881 6309361 ~ 6322088 (+)
CI01000001_06303405_06305351 TNNC2 coding upstream 137618 6303405 ~ 6305351 (+)
CI01000001_06458769_06470107 ARHGEF3L coding downstream 2910 6458769 ~ 6470495 (+)
CI01000001_06474891_06479887 USP21 coding downstream 19032 6474891 ~ 6480025 (+)
CI01000001_06484769_06502296 CCDC30 coding downstream 28910 6484769 ~ 6504149 (+)
CI01000001_06519105_06525958 NA coding downstream 62774 6518633 ~ 6526120 (+)
CI01000001_06531852_06539325 TTC34 coding downstream 75993 6531852 ~ 6539493 (+)
G16247 NA non-coding upstream 9641 6433084 ~ 6433328 (+)
G16212 NA non-coding upstream 160417 6282339 ~ 6282552 (+)
G16193 NA non-coding upstream 215824 6226859 ~ 6227145 (+)
G16189 NA non-coding upstream 234189 6208552 ~ 6208780 (+)
G16188 NA non-coding upstream 234615 6207632 ~ 6208354 (+)
G16257 NA non-coding downstream 59262 6515121 ~ 6515398 (+)
G16284 NA non-coding downstream 216323 6672182 ~ 6673511 (+)
CI01000001_06718133_06747744 KCNAB2.L, KCNAB2A, KCNAB2B, KCNAB2 non-coding downstream 267950 6717159 ~ 6747744 (+)
G16317 NA non-coding downstream 344309 6800168 ~ 6800381 (+)
CI01000001_06893068_06917387 IFFO2A non-coding downstream 459928 6893068 ~ 6917660 (+)
G15995 NA other upstream 728018 5711885 ~ 5714951 (+)
CI01000001_05279884_05287123 NA other upstream 1153013 5279837 ~ 5287698 (+)
G15794 NA other upstream 1378265 5061218 ~ 5064704 (+)
CI01000001_03618075_03620436 NA other upstream 2821518 3618075 ~ 3621451 (+)
CI01000001_01668334_01670035 CAMK2N1B other upstream 4771965 1667762 ~ 1671167 (+)
CI01000001_07531945_07539781 NA other downstream 1076713 7531541 ~ 7540586 (+)
G17234 NA other downstream 1576265 8032124 ~ 8032483 (+)
G17353 NA other downstream 2760163 9216022 ~ 9228859 (+)
G17354 NA other downstream 2778604 9234463 ~ 9240677 (+)
CI01000001_09435836_09436037 NA other downstream 2962469 9435836 ~ 9436373 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
bowfin (Amia calva) AMCG00009659 uba1 coding CM030126.1 CM030126.1 43859081 ~ 43873704 (+)